HEADER CAPPING ENZYME 20-APR-97 1CKM TITLE STRUCTURE OF TWO DIFFERENT CONFORMATIONS OF MRNA CAPPING ENZYME IN TITLE 2 COMPLEX WITH GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MRNA CAPPING ENZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNA GUANYLYLTRANSFERASE; COMPND 5 EC: 2.7.7.50; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARAMECIUM BURSARIA CHLORELLA VIRUS 1; SOURCE 3 ORGANISM_TAXID: 10506; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MRNA, CAPPING ENZYME, NUCLEOTIDYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.HAKANSSON,A.J.DOHERTY,D.B.WIGLEY REVDAT 3 07-FEB-24 1CKM 1 REMARK REVDAT 2 24-FEB-09 1CKM 1 VERSN REVDAT 1 07-JUL-97 1CKM 0 JRNL AUTH K.HAKANSSON,A.J.DOHERTY,S.SHUMAN,D.B.WIGLEY JRNL TITL X-RAY CRYSTALLOGRAPHY REVEALS A LARGE CONFORMATIONAL CHANGE JRNL TITL 2 DURING GUANYL TRANSFER BY MRNA CAPPING ENZYMES. JRNL REF CELL(CAMBRIDGE,MASS.) V. 89 545 1997 JRNL REFN ISSN 0092-8674 JRNL PMID 9160746 JRNL DOI 10.1016/S0092-8674(00)80236-6 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.J.DOHERTY,K.HAKANSSON,C.K.HO,S.SHUMAN,D.B.WIGLEY REMARK 1 TITL CRYSTALLIZATION OF THE RNA GUANYLYLTRANSFERASE OF CHLORELLA REMARK 1 TITL 2 VIRUS PBCV-1 CHANGE DURING GUANYL TRANSFER BY MRNA CAPPING REMARK 1 TITL 3 ENZYMES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 35714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5122 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.714 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.16 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : USER DEFINED REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 2 : USER DEFINED REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX7.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.448 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36196 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MULTIPLE ISOMORPHOUS REMARK 200 REPLACEMENT WITH A MERCURY DERIVATIVE OBTAINED BY SOAKING THE REMARK 200 CRYSTAL FOR TWO HOURS IN 1 MM THIMEROSAL AND A SELENOMETHIONINE REMARK 200 DERIVATIVE REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP VAPOR DIFFUSION. 10-15 REMARK 280 MG/ML PROTEIN IN 50 MM TRIS-HCL, 0.5 M NACL, 10 MM MGCL2, 5MM REMARK 280 GTP, 2 MM EDTA, 4 MM DTT, PH 7.5 WERE MIXED WITH AN EQUAL VOLUME REMARK 280 OF AND EQUILIBRATED AGAINST 100 MM TRIS-HCL, 200 MM NACL, 200 MM REMARK 280 AMMONIUM SULFATE 34% MEOPEG 5000, PH 7.5., VAPOR DIFFUSION - REMARK 280 HANGING DROP, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.87600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.87600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.66600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 107.46550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.66600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 107.46550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.87600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.66600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 107.46550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.87600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.66600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 107.46550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TWO MOLECULES IN THE ASYMMETRIC UNIT ARE IN DIFFERENT REMARK 300 CONFORMATIONS. THE PROTEIN IS MONOMERIC AND THIS ENTRY REMARK 300 MERELY REPRESENTS A CO-CRYSTAL OF THE ENZYME IN TWO REMARK 300 DIFFERENT CONFORMATIONS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 93.33200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.87600 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 93.33200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.87600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 THR A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 328 REMARK 465 TRP A 329 REMARK 465 GLU A 330 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 ILE B 6 REMARK 465 ASN B 7 REMARK 465 THR B 8 REMARK 465 GLY B 9 REMARK 465 LYS B 10 REMARK 465 LYS B 328 REMARK 465 TRP B 329 REMARK 465 GLU B 330 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 29 NE2 HIS A 29 CD2 -0.068 REMARK 500 HIS A 202 NE2 HIS A 202 CD2 -0.067 REMARK 500 HIS A 211 NE2 HIS A 211 CD2 -0.076 REMARK 500 HIS A 241 NE2 HIS A 241 CD2 -0.075 REMARK 500 HIS B 51 NE2 HIS B 51 CD2 -0.068 REMARK 500 HIS B 195 NE2 HIS B 195 CD2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 186 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TRP A 190 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP A 190 CE2 - CD2 - CG ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 262 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TRP A 289 CD1 - CG - CD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 TRP A 289 CG - CD1 - NE1 ANGL. DEV. = -6.6 DEGREES REMARK 500 TRP A 289 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 106 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 120 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 PHE B 146 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 164 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 164 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 TRP B 190 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP B 190 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ILE B 279 CG1 - CB - CG2 ANGL. DEV. = -14.5 DEGREES REMARK 500 TRP B 289 CD1 - CG - CD2 ANGL. DEV. = 7.9 DEGREES REMARK 500 TRP B 289 CG - CD1 - NE1 ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP B 289 CE2 - CD2 - CG ANGL. DEV. = -7.2 DEGREES REMARK 500 ARG B 304 CA - CB - CG ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG B 304 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 33.07 -94.89 REMARK 500 LYS A 52 29.21 -78.14 REMARK 500 MET A 108 32.80 77.49 REMARK 500 PRO A 179 -34.86 -39.84 REMARK 500 HIS A 195 42.82 -103.91 REMARK 500 LEU A 324 0.89 -67.82 REMARK 500 ASN B 117 50.89 -92.84 REMARK 500 SER B 152 42.48 38.88 REMARK 500 HIS B 195 72.33 -116.90 REMARK 500 GLU B 250 -47.44 -24.17 REMARK 500 ARG B 262 47.18 38.90 REMARK 500 VAL B 267 -4.64 -148.79 REMARK 500 ASN B 317 73.29 -105.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 98 0.12 SIDE CHAIN REMARK 500 TYR A 111 0.09 SIDE CHAIN REMARK 500 TYR A 274 0.07 SIDE CHAIN REMARK 500 TYR B 226 0.08 SIDE CHAIN REMARK 500 TYR B 273 0.07 SIDE CHAIN REMARK 500 TYR B 307 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: GPA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ACTIVE SITE LYSINE. REMARK 800 REMARK 800 SITE_IDENTIFIER: GPB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ACTIVE SITE LYSINE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP B 999 DBREF 1CKM A 1 330 UNP Q84424 MCE_CHVP1 1 330 DBREF 1CKM B 1 330 UNP Q84424 MCE_CHVP1 1 330 SEQRES 1 A 330 MET VAL PRO PRO THR ILE ASN THR GLY LYS ASN ILE THR SEQRES 2 A 330 THR GLU ARG ALA VAL LEU THR LEU ASN GLY LEU GLN ILE SEQRES 3 A 330 LYS LEU HIS LYS VAL VAL GLY GLU SER ARG ASP ASP ILE SEQRES 4 A 330 VAL ALA LYS MET LYS ASP LEU ALA MET ASP ASP HIS LYS SEQRES 5 A 330 PHE PRO ARG LEU PRO GLY PRO ASN PRO VAL SER ILE GLU SEQRES 6 A 330 ARG LYS ASP PHE GLU LYS LEU LYS GLN ASN LYS TYR VAL SEQRES 7 A 330 VAL SER GLU LYS THR ASP GLY ILE ARG PHE MET MET PHE SEQRES 8 A 330 PHE THR ARG VAL PHE GLY PHE LYS VAL CYS THR ILE ILE SEQRES 9 A 330 ASP ARG ALA MET THR VAL TYR LEU LEU PRO PHE LYS ASN SEQRES 10 A 330 ILE PRO ARG VAL LEU PHE GLN GLY SER ILE PHE ASP GLY SEQRES 11 A 330 GLU LEU CYS VAL ASP ILE VAL GLU LYS LYS PHE ALA PHE SEQRES 12 A 330 VAL LEU PHE ASP ALA VAL VAL VAL SER GLY VAL THR VAL SEQRES 13 A 330 SER GLN MET ASP LEU ALA SER ARG PHE PHE ALA MET LYS SEQRES 14 A 330 ARG SER LEU LYS GLU PHE LYS ASN VAL PRO GLU ASP PRO SEQRES 15 A 330 ALA ILE LEU ARG TYR LYS GLU TRP ILE PRO LEU GLU HIS SEQRES 16 A 330 PRO THR ILE ILE LYS ASP HIS LEU LYS LYS ALA ASN ALA SEQRES 17 A 330 ILE TYR HIS THR ASP GLY LEU ILE ILE MET SER VAL ASP SEQRES 18 A 330 GLU PRO VAL ILE TYR GLY ARG ASN PHE ASN LEU PHE LYS SEQRES 19 A 330 LEU LYS PRO GLY THR HIS HIS THR ILE ASP PHE ILE ILE SEQRES 20 A 330 MET SER GLU ASP GLY THR ILE GLY ILE PHE ASP PRO ASN SEQRES 21 A 330 LEU ARG LYS ASN VAL PRO VAL GLY LYS LEU ASP GLY TYR SEQRES 22 A 330 TYR ASN LYS GLY SER ILE VAL GLU CYS GLY PHE ALA ASP SEQRES 23 A 330 GLY THR TRP LYS TYR ILE GLN GLY ARG SER ASP LYS ASN SEQRES 24 A 330 GLN ALA ASN ASP ARG LEU THR TYR GLU LYS THR LEU LEU SEQRES 25 A 330 ASN ILE GLU GLU ASN ILE THR ILE ASP GLU LEU LEU ASP SEQRES 26 A 330 LEU PHE LYS TRP GLU SEQRES 1 B 330 MET VAL PRO PRO THR ILE ASN THR GLY LYS ASN ILE THR SEQRES 2 B 330 THR GLU ARG ALA VAL LEU THR LEU ASN GLY LEU GLN ILE SEQRES 3 B 330 LYS LEU HIS LYS VAL VAL GLY GLU SER ARG ASP ASP ILE SEQRES 4 B 330 VAL ALA LYS MET LYS ASP LEU ALA MET ASP ASP HIS LYS SEQRES 5 B 330 PHE PRO ARG LEU PRO GLY PRO ASN PRO VAL SER ILE GLU SEQRES 6 B 330 ARG LYS ASP PHE GLU LYS LEU LYS GLN ASN LYS TYR VAL SEQRES 7 B 330 VAL SER GLU LYS THR ASP GLY ILE ARG PHE MET MET PHE SEQRES 8 B 330 PHE THR ARG VAL PHE GLY PHE LYS VAL CYS THR ILE ILE SEQRES 9 B 330 ASP ARG ALA MET THR VAL TYR LEU LEU PRO PHE LYS ASN SEQRES 10 B 330 ILE PRO ARG VAL LEU PHE GLN GLY SER ILE PHE ASP GLY SEQRES 11 B 330 GLU LEU CYS VAL ASP ILE VAL GLU LYS LYS PHE ALA PHE SEQRES 12 B 330 VAL LEU PHE ASP ALA VAL VAL VAL SER GLY VAL THR VAL SEQRES 13 B 330 SER GLN MET ASP LEU ALA SER ARG PHE PHE ALA MET LYS SEQRES 14 B 330 ARG SER LEU LYS GLU PHE LYS ASN VAL PRO GLU ASP PRO SEQRES 15 B 330 ALA ILE LEU ARG TYR LYS GLU TRP ILE PRO LEU GLU HIS SEQRES 16 B 330 PRO THR ILE ILE LYS ASP HIS LEU LYS LYS ALA ASN ALA SEQRES 17 B 330 ILE TYR HIS THR ASP GLY LEU ILE ILE MET SER VAL ASP SEQRES 18 B 330 GLU PRO VAL ILE TYR GLY ARG ASN PHE ASN LEU PHE LYS SEQRES 19 B 330 LEU LYS PRO GLY THR HIS HIS THR ILE ASP PHE ILE ILE SEQRES 20 B 330 MET SER GLU ASP GLY THR ILE GLY ILE PHE ASP PRO ASN SEQRES 21 B 330 LEU ARG LYS ASN VAL PRO VAL GLY LYS LEU ASP GLY TYR SEQRES 22 B 330 TYR ASN LYS GLY SER ILE VAL GLU CYS GLY PHE ALA ASP SEQRES 23 B 330 GLY THR TRP LYS TYR ILE GLN GLY ARG SER ASP LYS ASN SEQRES 24 B 330 GLN ALA ASN ASP ARG LEU THR TYR GLU LYS THR LEU LEU SEQRES 25 B 330 ASN ILE GLU GLU ASN ILE THR ILE ASP GLU LEU LEU ASP SEQRES 26 B 330 LEU PHE LYS TRP GLU HET GTP A 899 32 HET GTP B 999 32 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 5 HOH *360(H2 O) HELIX 1 1 GLY A 33 LEU A 46 1 14 HELIX 2 2 ARG A 66 GLN A 74 5 9 HELIX 3 3 LEU A 122 GLN A 124 5 3 HELIX 4 4 LEU A 161 GLU A 174 1 14 HELIX 5 5 PRO A 196 ILE A 209 1 14 HELIX 6 6 ARG A 304 GLU A 316 1 13 HELIX 7 7 ILE A 320 ASP A 325 1 6 HELIX 8 8 GLY B 33 ALA B 47 1 15 HELIX 9 9 ARG B 66 GLN B 74 5 9 HELIX 10 10 ARG B 120 GLN B 124 5 5 HELIX 11 11 LEU B 161 LEU B 172 1 12 HELIX 12 12 PRO B 196 ALA B 208 1 13 HELIX 13 13 PRO B 259 LEU B 261 5 3 HELIX 14 14 ARG B 304 GLU B 315 1 12 HELIX 15 15 ILE B 320 ASP B 325 1 6 SHEET 1 A 2 THR A 14 LEU A 21 0 SHEET 2 A 2 LEU A 24 VAL A 31 -1 N LYS A 30 O GLU A 15 SHEET 1 B 3 TYR A 77 GLU A 81 0 SHEET 2 B 3 LEU A 215 SER A 219 -1 N MET A 218 O VAL A 78 SHEET 3 B 3 LEU A 232 LEU A 235 -1 N LEU A 235 O LEU A 215 SHEET 1 C 6 VAL A 110 LEU A 112 0 SHEET 2 C 6 PHE A 98 ILE A 104 -1 N ILE A 103 O TYR A 111 SHEET 3 C 6 ILE A 86 VAL A 95 -1 N VAL A 95 O PHE A 98 SHEET 4 C 6 SER A 126 ASP A 135 -1 N LEU A 132 O ILE A 86 SHEET 5 C 6 LYS A 140 LEU A 145 -1 N VAL A 144 O GLU A 131 SHEET 6 C 6 ILE A 184 TYR A 187 1 N ILE A 184 O PHE A 143 SHEET 1 D 3 ILE A 243 ILE A 246 0 SHEET 2 D 3 ILE A 279 ALA A 285 -1 N CYS A 282 O ILE A 243 SHEET 3 D 3 THR A 288 GLY A 294 -1 N GLN A 293 O GLU A 281 SHEET 1 E 2 GLY A 255 ASP A 258 0 SHEET 2 E 2 LYS A 263 PRO A 266 -1 N VAL A 265 O ILE A 256 SHEET 1 F 2 ILE A 127 ASP A 129 0 SHEET 2 F 2 ASP A 147 VAL A 150 -1 N VAL A 150 O ILE A 127 SHEET 1 G 8 THR B 14 LEU B 21 0 SHEET 2 G 8 LEU B 24 VAL B 31 -1 N LYS B 30 O GLU B 15 SHEET 3 G 8 VAL B 110 LEU B 112 -1 N LEU B 112 O HIS B 29 SHEET 4 G 8 PHE B 98 ILE B 104 -1 N ILE B 103 O TYR B 111 SHEET 5 G 8 ILE B 86 VAL B 95 -1 N VAL B 95 O PHE B 98 SHEET 6 G 8 SER B 126 ASP B 135 -1 N LEU B 132 O ILE B 86 SHEET 7 G 8 LYS B 140 LEU B 145 -1 N VAL B 144 O GLU B 131 SHEET 8 G 8 ILE B 184 TYR B 187 1 N ILE B 184 O PHE B 143 SHEET 1 H 3 TYR B 77 GLU B 81 0 SHEET 2 H 3 LEU B 215 SER B 219 -1 N MET B 218 O VAL B 78 SHEET 3 H 3 PHE B 233 LEU B 235 -1 N LEU B 235 O LEU B 215 SHEET 1 I 5 LYS B 263 LYS B 269 0 SHEET 2 I 5 THR B 253 ASP B 258 -1 N ASP B 258 O LYS B 263 SHEET 3 I 5 THR B 242 SER B 249 -1 N SER B 249 O THR B 253 SHEET 4 I 5 ILE B 279 ALA B 285 -1 N CYS B 282 O ILE B 243 SHEET 5 I 5 THR B 288 GLY B 294 -1 N GLN B 293 O GLU B 281 SHEET 1 J 2 ILE B 127 ASP B 129 0 SHEET 2 J 2 ASP B 147 VAL B 150 -1 N VAL B 150 O ILE B 127 SITE 1 GPA 1 LYS A 82 SITE 1 GPB 1 LYS B 82 SITE 1 AC1 17 PRO A 59 PRO A 61 LYS A 82 THR A 83 SITE 2 AC1 17 ARG A 87 ARG A 106 GLU A 131 PHE A 146 SITE 3 AC1 17 LYS A 188 TRP A 190 ILE A 216 LEU A 232 SITE 4 AC1 17 LYS A 234 HOH A 972 HOH A1043 HOH A1061 SITE 5 AC1 17 HOH A1062 SITE 1 AC2 25 PRO B 59 LYS B 82 THR B 83 ARG B 87 SITE 2 AC2 25 ARG B 106 GLU B 131 PHE B 146 LYS B 188 SITE 3 AC2 25 TRP B 190 ILE B 216 ARG B 228 LYS B 234 SITE 4 AC2 25 LYS B 236 ASP B 244 ARG B 295 LYS B 298 SITE 5 AC2 25 ASN B 302 HOH B1062 HOH B1105 HOH B1148 SITE 6 AC2 25 HOH B1149 HOH B1150 HOH B1155 HOH B1173 SITE 7 AC2 25 HOH B1175 CRYST1 93.332 214.931 105.752 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010714 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009456 0.00000