data_1CLY # _entry.id 1CLY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1CLY WWPDB D_1000172384 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CLY _pdbx_database_status.recvd_initial_deposition_date 1995-03-15 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sheriff, S.' 1 'Bajorath, J.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The x-ray structure of an anti-tumour antibody in complex with antigen.' Nat.Struct.Biol. 2 466 471 1995 NSBIEW US 1072-8368 2024 ? 7664109 10.1038/nsb0695-466 1 ;Crystallization and Preliminary X-Ray Analysis of the Monoclonal Anti-Tumor Antibody Br96 and its Complex with the Lewis Y Determinant ; J.Mol.Biol. 235 372 ? 1994 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jeffrey, P.D.' 1 ? primary 'Bajorath, J.' 2 ? primary 'Chang, C.Y.' 3 ? primary 'Yelton, D.' 4 ? primary 'Hellstrom, I.' 5 ? primary 'Hellstrom, K.E.' 6 ? primary 'Sheriff, S.' 7 ? 1 'Chang, C.Y.' 8 ? 1 'Jeffrey, P.D.' 9 ? 1 'Bajorath, J.' 10 ? 1 'Hellstrom, I.' 11 ? 1 'Hellstrom, K.E.' 12 ? 1 'Sheriff, S.' 13 ? # _cell.entry_id 1CLY _cell.length_a 81.700 _cell.length_b 81.700 _cell.length_c 166.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CLY _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'IGG FAB (HUMAN IGG1, KAPPA)' 24077.883 1 ? ? 'CHIMERIC FRAGMENT (BR96)' 'COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER' 2 polymer man 'IGG FAB (HUMAN IGG1, KAPPA)' 23609.449 1 ? ? 'CHIMERIC FRAGMENT (BR96)' 'COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER' 3 branched man 'alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose' 675.630 1 ? ? ? ? 4 non-polymer syn 'METHYL NONANOATE (ESTER)' 172.265 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'CBR96 FAB (IMMUNOGLOBULIN)' 2 'CBR96 FAB (IMMUNOGLOBULIN)' 3 'Lewis Y antigen, beta anomer' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; ;DVLMTQIPVSLPVSLGDQASISCRSSQIIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKI SRVEAEDLGVYYCFQGSHVPFTFGSGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQ SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; L ? 2 'polypeptide(L)' no no ;EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP ; ;EVNLVESGGGLVQPGGSLKVSCVTSGFTFSDYYMYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRFTISRDNAKNSLY LQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEP ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 VAL n 1 3 LEU n 1 4 MET n 1 5 THR n 1 6 GLN n 1 7 ILE n 1 8 PRO n 1 9 VAL n 1 10 SER n 1 11 LEU n 1 12 PRO n 1 13 VAL n 1 14 SER n 1 15 LEU n 1 16 GLY n 1 17 ASP n 1 18 GLN n 1 19 ALA n 1 20 SER n 1 21 ILE n 1 22 SER n 1 23 CYS n 1 24 ARG n 1 25 SER n 1 26 SER n 1 27 GLN n 1 28 ILE n 1 29 ILE n 1 30 VAL n 1 31 HIS n 1 32 ASN n 1 33 ASN n 1 34 GLY n 1 35 ASN n 1 36 THR n 1 37 TYR n 1 38 LEU n 1 39 GLU n 1 40 TRP n 1 41 TYR n 1 42 LEU n 1 43 GLN n 1 44 LYS n 1 45 PRO n 1 46 GLY n 1 47 GLN n 1 48 SER n 1 49 PRO n 1 50 GLN n 1 51 LEU n 1 52 LEU n 1 53 ILE n 1 54 TYR n 1 55 LYS n 1 56 VAL n 1 57 SER n 1 58 ASN n 1 59 ARG n 1 60 PHE n 1 61 SER n 1 62 GLY n 1 63 VAL n 1 64 PRO n 1 65 ASP n 1 66 ARG n 1 67 PHE n 1 68 SER n 1 69 GLY n 1 70 SER n 1 71 GLY n 1 72 SER n 1 73 GLY n 1 74 THR n 1 75 ASP n 1 76 PHE n 1 77 THR n 1 78 LEU n 1 79 LYS n 1 80 ILE n 1 81 SER n 1 82 ARG n 1 83 VAL n 1 84 GLU n 1 85 ALA n 1 86 GLU n 1 87 ASP n 1 88 LEU n 1 89 GLY n 1 90 VAL n 1 91 TYR n 1 92 TYR n 1 93 CYS n 1 94 PHE n 1 95 GLN n 1 96 GLY n 1 97 SER n 1 98 HIS n 1 99 VAL n 1 100 PRO n 1 101 PHE n 1 102 THR n 1 103 PHE n 1 104 GLY n 1 105 SER n 1 106 GLY n 1 107 THR n 1 108 LYS n 1 109 LEU n 1 110 GLU n 1 111 ILE n 1 112 LYS n 1 113 ARG n 1 114 THR n 1 115 VAL n 1 116 ALA n 1 117 ALA n 1 118 PRO n 1 119 SER n 1 120 VAL n 1 121 PHE n 1 122 ILE n 1 123 PHE n 1 124 PRO n 1 125 PRO n 1 126 SER n 1 127 ASP n 1 128 GLU n 1 129 GLN n 1 130 LEU n 1 131 LYS n 1 132 SER n 1 133 GLY n 1 134 THR n 1 135 ALA n 1 136 SER n 1 137 VAL n 1 138 VAL n 1 139 CYS n 1 140 LEU n 1 141 LEU n 1 142 ASN n 1 143 ASN n 1 144 PHE n 1 145 TYR n 1 146 PRO n 1 147 ARG n 1 148 GLU n 1 149 ALA n 1 150 LYS n 1 151 VAL n 1 152 GLN n 1 153 TRP n 1 154 LYS n 1 155 VAL n 1 156 ASP n 1 157 ASN n 1 158 ALA n 1 159 LEU n 1 160 GLN n 1 161 SER n 1 162 GLY n 1 163 ASN n 1 164 SER n 1 165 GLN n 1 166 GLU n 1 167 SER n 1 168 VAL n 1 169 THR n 1 170 GLU n 1 171 GLN n 1 172 ASP n 1 173 SER n 1 174 LYS n 1 175 ASP n 1 176 SER n 1 177 THR n 1 178 TYR n 1 179 SER n 1 180 LEU n 1 181 SER n 1 182 SER n 1 183 THR n 1 184 LEU n 1 185 THR n 1 186 LEU n 1 187 SER n 1 188 LYS n 1 189 ALA n 1 190 ASP n 1 191 TYR n 1 192 GLU n 1 193 LYS n 1 194 HIS n 1 195 LYS n 1 196 VAL n 1 197 TYR n 1 198 ALA n 1 199 CYS n 1 200 GLU n 1 201 VAL n 1 202 THR n 1 203 HIS n 1 204 GLN n 1 205 GLY n 1 206 LEU n 1 207 SER n 1 208 SER n 1 209 PRO n 1 210 VAL n 1 211 THR n 1 212 LYS n 1 213 SER n 1 214 PHE n 1 215 ASN n 1 216 ARG n 1 217 GLY n 1 218 GLU n 1 219 CYS n 2 1 GLU n 2 2 VAL n 2 3 ASN n 2 4 LEU n 2 5 VAL n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 GLY n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 GLN n 2 14 PRO n 2 15 GLY n 2 16 GLY n 2 17 SER n 2 18 LEU n 2 19 LYS n 2 20 VAL n 2 21 SER n 2 22 CYS n 2 23 VAL n 2 24 THR n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 THR n 2 29 PHE n 2 30 SER n 2 31 ASP n 2 32 TYR n 2 33 TYR n 2 34 MET n 2 35 TYR n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 THR n 2 41 PRO n 2 42 GLU n 2 43 LYS n 2 44 ARG n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 VAL n 2 49 ALA n 2 50 TYR n 2 51 ILE n 2 52 SER n 2 53 GLN n 2 54 GLY n 2 55 GLY n 2 56 ASP n 2 57 ILE n 2 58 THR n 2 59 ASP n 2 60 TYR n 2 61 PRO n 2 62 ASP n 2 63 THR n 2 64 VAL n 2 65 LYS n 2 66 GLY n 2 67 ARG n 2 68 PHE n 2 69 THR n 2 70 ILE n 2 71 SER n 2 72 ARG n 2 73 ASP n 2 74 ASN n 2 75 ALA n 2 76 LYS n 2 77 ASN n 2 78 SER n 2 79 LEU n 2 80 TYR n 2 81 LEU n 2 82 GLN n 2 83 MET n 2 84 SER n 2 85 ARG n 2 86 LEU n 2 87 LYS n 2 88 SER n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 MET n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ARG n 2 99 GLY n 2 100 LEU n 2 101 ASP n 2 102 ASP n 2 103 GLY n 2 104 ALA n 2 105 TRP n 2 106 PHE n 2 107 ALA n 2 108 TYR n 2 109 TRP n 2 110 GLY n 2 111 GLN n 2 112 GLY n 2 113 THR n 2 114 LEU n 2 115 VAL n 2 116 THR n 2 117 VAL n 2 118 SER n 2 119 VAL n 2 120 ALA n 2 121 SER n 2 122 THR n 2 123 LYS n 2 124 GLY n 2 125 PRO n 2 126 SER n 2 127 VAL n 2 128 PHE n 2 129 PRO n 2 130 LEU n 2 131 ALA n 2 132 PRO n 2 133 SER n 2 134 SER n 2 135 LYS n 2 136 SER n 2 137 THR n 2 138 SER n 2 139 GLY n 2 140 GLY n 2 141 THR n 2 142 ALA n 2 143 ALA n 2 144 LEU n 2 145 GLY n 2 146 CYS n 2 147 LEU n 2 148 VAL n 2 149 LYS n 2 150 ASP n 2 151 TYR n 2 152 PHE n 2 153 PRO n 2 154 GLN n 2 155 PRO n 2 156 VAL n 2 157 THR n 2 158 VAL n 2 159 SER n 2 160 TRP n 2 161 ASN n 2 162 SER n 2 163 GLY n 2 164 ALA n 2 165 LEU n 2 166 THR n 2 167 SER n 2 168 GLY n 2 169 VAL n 2 170 HIS n 2 171 THR n 2 172 PHE n 2 173 PRO n 2 174 ALA n 2 175 VAL n 2 176 LEU n 2 177 GLN n 2 178 SER n 2 179 SER n 2 180 GLY n 2 181 LEU n 2 182 TYR n 2 183 SER n 2 184 LEU n 2 185 SER n 2 186 SER n 2 187 VAL n 2 188 VAL n 2 189 THR n 2 190 VAL n 2 191 PRO n 2 192 SER n 2 193 SER n 2 194 SER n 2 195 LEU n 2 196 GLY n 2 197 THR n 2 198 GLN n 2 199 THR n 2 200 TYR n 2 201 ILE n 2 202 CYS n 2 203 ASN n 2 204 VAL n 2 205 ASN n 2 206 HIS n 2 207 LYS n 2 208 PRO n 2 209 SER n 2 210 ASN n 2 211 THR n 2 212 LYS n 2 213 VAL n 2 214 ASP n 2 215 LYS n 2 216 ARG n 2 217 VAL n 2 218 GLU n 2 219 PRO n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo ? ? ? ? ? ? 'CH1, IGG1' 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ;HYBRIDOMA PRODUCED BY FUSIONING BALB/C SPLEEN CELLS WITH P2X63-AG 8.653 MOUSE MYELOMA CELLS. HUMAN CONSTANT REGIONS INTRODUCED BY HOMOLOGOUS RECOMBINATION ; 2 1 sample ? ? ? human Homo ? ? ? ? ? ? 'CH1, IGG1' 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ;HYBRIDOMA PRODUCED BY FUSIONING BALB/C SPLEEN CELLS WITH P2X63-AG 8.653 MOUSE MYELOMA CELLS. HUMAN CONSTANT REGIONS INTRODUCED BY HOMOLOGOUS RECOMBINATION ; # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1CLY 1CLY ? ? ? 2 2 PDB 1CLY 1CLY ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1CLY L 1 ? 219 ? 1CLY 1 ? 214 ? 1 214 2 2 1CLY H 1 ? 219 ? 1CLY 1 ? 227 ? 1 227 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 NON non-polymer . 'METHYL NONANOATE (ESTER)' ? 'C10 H20 O2' 172.265 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1CLY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 56. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1993-07 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'GRAPHITE(002)' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH2R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1CLY _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 57.8 _reflns.d_resolution_high 2.51 _reflns.number_obs 20051 _reflns.number_all ? _reflns.percent_possible_obs 91.7 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.9 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3. _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.51 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all 90.8 _reflns_shell.Rmerge_I_obs 0.305 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.0 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1CLY _refine.ls_number_reflns_obs 17177 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8. _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 91. _refine.ls_R_factor_obs 0.238 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.238 _refine.ls_R_factor_R_free 0.298 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10. _refine.ls_number_reflns_R_free 1741 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 47.7 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'EX POST FACTO' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1CLY _refine_analyze.Luzzati_coordinate_error_obs 0.37 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3337 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3395 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 8. # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 27.1 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.3 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.61 _refine_ls_shell.number_reflns_R_work 1558 _refine_ls_shell.R_factor_R_work 0.334 _refine_ls_shell.percent_reflns_obs 71.7 _refine_ls_shell.R_factor_R_free 0.376 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 7.5 _refine_ls_shell.number_reflns_R_free 160 _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 'PARHCSDX.PRO (ENGH & HUBE' 'TOPHCSDX.PRO (ENGH & HUBER)' 'X-RAY DIFFRACTION' 2 PARAME_MOD.CHO TOPH3.CHO 'X-RAY DIFFRACTION' # _struct.entry_id 1CLY _struct.title 'IGG FAB (HUMAN IGG1, KAPPA) CHIMERIC FRAGMENT (CBR96) COMPLEXED WITH LEWIS Y NONOATE METHYL ESTER' _struct.pdbx_descriptor 'IGG FAB (HUMAN IGG1, KAPPA), METHYL NONANOATE (ESTER)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CLY _struct_keywords.pdbx_keywords IMMUNOGLOBULIN _struct_keywords.text 'IMMUNOGLOBULIN, IMMUNOGLOBULIN C REGION, GLYCOPROTEIN, ANTIB' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 85 ? ASP A 87 ? ALA L 80 ASP L 82 5 ? 3 HELX_P HELX_P2 2 ASP A 127 ? LEU A 130 ? ASP L 122 LEU L 125 1 ? 4 HELX_P HELX_P3 3 LYS A 188 ? GLU A 192 ? LYS L 183 GLU L 187 1 ? 5 HELX_P HELX_P4 4 PHE B 29 ? ASP B 31 ? PHE H 29 ASP H 31 5 ? 3 HELX_P HELX_P5 5 ASP B 62 ? VAL B 64 ? ASP H 61 VAL H 63 5 ? 3 HELX_P HELX_P6 6 ASN B 74 ? LYS B 76 ? ASN H 73 LYS H 75 5 ? 3 HELX_P HELX_P7 7 SER B 88 ? ASP B 90 ? SER H 84 ASP H 86 5 ? 3 HELX_P HELX_P8 8 ASN B 161 ? GLY B 163 ? ASN H 162 GLY H 164 5 ? 3 HELX_P HELX_P9 9 SER B 192 ? SER B 194 ? SER H 195 SER H 197 5 ? 3 HELX_P HELX_P10 10 LYS B 207 ? SER B 209 ? LYS H 213 SER H 215 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 23 SG ? ? ? 1_555 A CYS 93 SG ? ? L CYS 23 L CYS 88 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf2 disulf ? ? A CYS 139 SG ? ? ? 1_555 A CYS 199 SG ? ? L CYS 134 L CYS 194 1_555 ? ? ? ? ? ? ? 2.027 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? H CYS 22 H CYS 92 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf4 disulf ? ? B CYS 146 SG ? ? ? 1_555 B CYS 202 SG ? ? H CYS 142 H CYS 208 1_555 ? ? ? ? ? ? ? 2.019 ? ? covale1 covale one ? D NON . C9 ? ? ? 1_555 C NAG . O1 ? ? H NON 232 A NAG 1 1_555 ? ? ? ? ? ? ? 1.442 ? ? covale2 covale both ? C NAG . O4 ? ? ? 1_555 C GAL . C1 ? ? A NAG 1 A GAL 2 1_555 ? ? ? ? ? ? ? 1.399 ? ? covale3 covale both ? C NAG . O3 ? ? ? 1_555 C FUC . C1 ? ? A NAG 1 A FUC 4 1_555 ? ? ? ? ? ? ? 1.414 ? ? covale4 covale both ? C GAL . O2 ? ? ? 1_555 C FUC . C1 ? ? A GAL 2 A FUC 3 1_555 ? ? ? ? ? ? ? 1.390 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 7 A . ? ILE 7 L PRO 8 A ? PRO 8 L 1 -0.28 2 VAL 99 A . ? VAL 94 L PRO 100 A ? PRO 95 L 1 0.06 3 TYR 145 A . ? TYR 140 L PRO 146 A ? PRO 141 L 1 -0.43 4 PHE 152 B . ? PHE 148 H PRO 153 B ? PRO 149 H 1 -0.34 5 GLN 154 B . ? GLN 150 H PRO 155 B ? PRO 151 H 1 0.41 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 4 ? D ? 3 ? E ? 4 ? F ? 5 ? G ? 4 ? H ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel F 1 2 ? anti-parallel F 2 3 ? anti-parallel F 3 4 ? anti-parallel F 4 5 ? anti-parallel G 1 2 ? anti-parallel G 2 3 ? anti-parallel G 3 4 ? anti-parallel H 1 2 ? anti-parallel H 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 4 ? ILE A 7 ? MET L 4 ILE L 7 A 2 ALA A 19 ? SER A 25 ? ALA L 19 SER L 25 A 3 ASP A 75 ? ILE A 80 ? ASP L 70 ILE L 75 A 4 PHE A 67 ? SER A 72 ? PHE L 62 SER L 67 B 1 SER A 10 ? SER A 14 ? SER L 10 SER L 14 B 2 THR A 107 ? LYS A 112 ? THR L 102 LYS L 107 B 3 GLY A 89 ? GLN A 95 ? GLY L 84 GLN L 90 B 4 LEU A 38 ? GLN A 43 ? LEU L 33 GLN L 38 B 5 GLN A 50 ? ILE A 53 ? GLN L 45 ILE L 48 C 1 SER A 119 ? PHE A 123 ? SER L 114 PHE L 118 C 2 ALA A 135 ? ASN A 142 ? ALA L 130 ASN L 137 C 3 LEU A 180 ? LEU A 186 ? LEU L 175 LEU L 181 C 4 SER A 164 ? VAL A 168 ? SER L 159 VAL L 163 D 1 ALA A 149 ? VAL A 155 ? ALA L 144 VAL L 150 D 2 VAL A 196 ? HIS A 203 ? VAL L 191 HIS L 198 D 3 VAL A 210 ? ASN A 215 ? VAL L 205 ASN L 210 E 1 ASN B 3 ? SER B 7 ? ASN H 3 SER H 7 E 2 SER B 17 ? SER B 25 ? SER H 17 SER H 25 E 3 SER B 78 ? SER B 84 A SER H 77 SER H 82 E 4 PHE B 68 ? ASP B 73 ? PHE H 67 ASP H 72 F 1 THR B 113 ? VAL B 115 ? THR H 107 VAL H 109 F 2 ALA B 92 ? ARG B 98 ? ALA H 88 ARG H 94 F 3 MET B 34 ? THR B 40 ? MET H 34 THR H 40 F 4 LEU B 45 ? ILE B 51 ? LEU H 45 ILE H 51 F 5 THR B 58 ? TYR B 60 ? THR H 57 TYR H 59 G 1 SER B 126 ? LEU B 130 ? SER H 120 LEU H 124 G 2 ALA B 142 ? LYS B 149 ? ALA H 138 LYS H 145 G 3 LEU B 184 ? VAL B 190 ? LEU H 187 VAL H 193 G 4 VAL B 169 ? THR B 171 ? VAL H 171 THR H 173 H 1 THR B 157 ? TRP B 160 ? THR H 153 TRP H 157 H 2 TYR B 200 ? HIS B 206 ? TYR H 206 HIS H 212 H 3 THR B 211 ? VAL B 217 ? THR H 217 VAL H 223 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 5 ? O THR L 5 N ARG A 24 ? N ARG L 24 A 2 3 O ALA A 19 ? O ALA L 19 N ILE A 80 ? N ILE L 75 A 3 4 O ASP A 75 ? O ASP L 70 N SER A 72 ? N SER L 67 B 1 2 O LEU A 11 ? O LEU L 11 N LYS A 108 ? N LYS L 103 B 2 3 O THR A 107 ? O THR L 102 N TYR A 91 ? N TYR L 86 B 3 4 O VAL A 90 ? O VAL L 85 N GLN A 43 ? N GLN L 38 B 4 5 O TRP A 40 ? O TRP L 35 N ILE A 53 ? N ILE L 48 C 1 2 O SER A 119 ? O SER L 114 N ASN A 142 ? N ASN L 137 C 2 3 O ALA A 135 ? O ALA L 130 N LEU A 186 ? N LEU L 181 C 3 4 O SER A 181 ? O SER L 176 N SER A 167 ? N SER L 162 D 1 2 O LYS A 150 ? O LYS L 145 N THR A 202 ? N THR L 197 D 2 3 O TYR A 197 ? O TYR L 192 N PHE A 214 ? N PHE L 209 E 1 2 O ASN B 3 ? O ASN H 3 N SER B 25 ? N SER H 25 E 2 3 O LEU B 18 ? O LEU H 18 N MET B 83 ? N MET H 82 E 3 4 O SER B 78 ? O SER H 77 N ASP B 73 ? N ASP H 72 F 1 2 O THR B 113 ? O THR H 107 N TYR B 94 ? N TYR H 90 F 2 3 O MET B 93 ? O MET H 89 N GLN B 39 ? N GLN H 39 F 3 4 O MET B 34 ? O MET H 34 N ILE B 51 ? N ILE H 51 F 4 5 O TYR B 50 ? O TYR H 50 N ASP B 59 ? N ASP H 58 G 1 2 O SER B 126 ? O SER H 120 N LYS B 149 ? N LYS H 145 G 2 3 O ALA B 142 ? O ALA H 138 N VAL B 190 ? N VAL H 193 G 3 4 O VAL B 187 ? O VAL H 190 N HIS B 170 ? N HIS H 172 H 1 2 O THR B 157 ? O THR H 153 N ASN B 205 ? N ASN H 211 H 2 3 O TYR B 200 ? O TYR H 206 N VAL B 217 ? N VAL H 223 # _database_PDB_matrix.entry_id 1CLY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1CLY _atom_sites.fract_transf_matrix[1][1] 0.012240 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012240 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006013 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? L . n A 1 2 VAL 2 2 ? ? ? L . n A 1 3 LEU 3 3 3 LEU LEU L . n A 1 4 MET 4 4 4 MET MET L . n A 1 5 THR 5 5 5 THR THR L . n A 1 6 GLN 6 6 6 GLN GLN L . n A 1 7 ILE 7 7 7 ILE ILE L . n A 1 8 PRO 8 8 8 PRO PRO L . n A 1 9 VAL 9 9 9 VAL VAL L . n A 1 10 SER 10 10 10 SER SER L . n A 1 11 LEU 11 11 11 LEU LEU L . n A 1 12 PRO 12 12 12 PRO PRO L . n A 1 13 VAL 13 13 13 VAL VAL L . n A 1 14 SER 14 14 14 SER SER L . n A 1 15 LEU 15 15 15 LEU LEU L . n A 1 16 GLY 16 16 16 GLY GLY L . n A 1 17 ASP 17 17 17 ASP ASP L . n A 1 18 GLN 18 18 18 GLN GLN L . n A 1 19 ALA 19 19 19 ALA ALA L . n A 1 20 SER 20 20 20 SER SER L . n A 1 21 ILE 21 21 21 ILE ILE L . n A 1 22 SER 22 22 22 SER SER L . n A 1 23 CYS 23 23 23 CYS CYS L . n A 1 24 ARG 24 24 24 ARG ARG L . n A 1 25 SER 25 25 25 SER SER L . n A 1 26 SER 26 26 26 SER SER L . n A 1 27 GLN 27 27 27 GLN GLN L . n A 1 28 ILE 28 27 27 ILE ILE L A n A 1 29 ILE 29 27 27 ILE ILE L B n A 1 30 VAL 30 27 27 VAL VAL L C n A 1 31 HIS 31 27 27 HIS HIS L D n A 1 32 ASN 32 27 27 ASN ASN L E n A 1 33 ASN 33 28 28 ASN ASN L . n A 1 34 GLY 34 29 29 GLY GLY L . n A 1 35 ASN 35 30 30 ASN ASN L . n A 1 36 THR 36 31 31 THR THR L . n A 1 37 TYR 37 32 32 TYR TYR L . n A 1 38 LEU 38 33 33 LEU LEU L . n A 1 39 GLU 39 34 34 GLU GLU L . n A 1 40 TRP 40 35 35 TRP TRP L . n A 1 41 TYR 41 36 36 TYR TYR L . n A 1 42 LEU 42 37 37 LEU LEU L . n A 1 43 GLN 43 38 38 GLN GLN L . n A 1 44 LYS 44 39 39 LYS LYS L . n A 1 45 PRO 45 40 40 PRO PRO L . n A 1 46 GLY 46 41 41 GLY GLY L . n A 1 47 GLN 47 42 42 GLN GLN L . n A 1 48 SER 48 43 43 SER SER L . n A 1 49 PRO 49 44 44 PRO PRO L . n A 1 50 GLN 50 45 45 GLN GLN L . n A 1 51 LEU 51 46 46 LEU LEU L . n A 1 52 LEU 52 47 47 LEU LEU L . n A 1 53 ILE 53 48 48 ILE ILE L . n A 1 54 TYR 54 49 49 TYR TYR L . n A 1 55 LYS 55 50 50 LYS LYS L . n A 1 56 VAL 56 51 51 VAL VAL L . n A 1 57 SER 57 52 52 SER SER L . n A 1 58 ASN 58 53 53 ASN ASN L . n A 1 59 ARG 59 54 54 ARG ARG L . n A 1 60 PHE 60 55 55 PHE PHE L . n A 1 61 SER 61 56 56 SER SER L . n A 1 62 GLY 62 57 57 GLY GLY L . n A 1 63 VAL 63 58 58 VAL VAL L . n A 1 64 PRO 64 59 59 PRO PRO L . n A 1 65 ASP 65 60 60 ASP ASP L . n A 1 66 ARG 66 61 61 ARG ARG L . n A 1 67 PHE 67 62 62 PHE PHE L . n A 1 68 SER 68 63 63 SER SER L . n A 1 69 GLY 69 64 64 GLY GLY L . n A 1 70 SER 70 65 65 SER SER L . n A 1 71 GLY 71 66 66 GLY GLY L . n A 1 72 SER 72 67 67 SER SER L . n A 1 73 GLY 73 68 68 GLY GLY L . n A 1 74 THR 74 69 69 THR THR L . n A 1 75 ASP 75 70 70 ASP ASP L . n A 1 76 PHE 76 71 71 PHE PHE L . n A 1 77 THR 77 72 72 THR THR L . n A 1 78 LEU 78 73 73 LEU LEU L . n A 1 79 LYS 79 74 74 LYS LYS L . n A 1 80 ILE 80 75 75 ILE ILE L . n A 1 81 SER 81 76 76 SER SER L . n A 1 82 ARG 82 77 77 ARG ARG L . n A 1 83 VAL 83 78 78 VAL VAL L . n A 1 84 GLU 84 79 79 GLU GLU L . n A 1 85 ALA 85 80 80 ALA ALA L . n A 1 86 GLU 86 81 81 GLU GLU L . n A 1 87 ASP 87 82 82 ASP ASP L . n A 1 88 LEU 88 83 83 LEU LEU L . n A 1 89 GLY 89 84 84 GLY GLY L . n A 1 90 VAL 90 85 85 VAL VAL L . n A 1 91 TYR 91 86 86 TYR TYR L . n A 1 92 TYR 92 87 87 TYR TYR L . n A 1 93 CYS 93 88 88 CYS CYS L . n A 1 94 PHE 94 89 89 PHE PHE L . n A 1 95 GLN 95 90 90 GLN GLN L . n A 1 96 GLY 96 91 91 GLY GLY L . n A 1 97 SER 97 92 92 SER SER L . n A 1 98 HIS 98 93 93 HIS HIS L . n A 1 99 VAL 99 94 94 VAL VAL L . n A 1 100 PRO 100 95 95 PRO PRO L . n A 1 101 PHE 101 96 96 PHE PHE L . n A 1 102 THR 102 97 97 THR THR L . n A 1 103 PHE 103 98 98 PHE PHE L . n A 1 104 GLY 104 99 99 GLY GLY L . n A 1 105 SER 105 100 100 SER SER L . n A 1 106 GLY 106 101 101 GLY GLY L . n A 1 107 THR 107 102 102 THR THR L . n A 1 108 LYS 108 103 103 LYS LYS L . n A 1 109 LEU 109 104 104 LEU LEU L . n A 1 110 GLU 110 105 105 GLU GLU L . n A 1 111 ILE 111 106 106 ILE ILE L . n A 1 112 LYS 112 107 107 LYS LYS L . n A 1 113 ARG 113 108 108 ARG ARG L . n A 1 114 THR 114 109 109 THR THR L . n A 1 115 VAL 115 110 110 VAL VAL L . n A 1 116 ALA 116 111 111 ALA ALA L . n A 1 117 ALA 117 112 112 ALA ALA L . n A 1 118 PRO 118 113 113 PRO PRO L . n A 1 119 SER 119 114 114 SER SER L . n A 1 120 VAL 120 115 115 VAL VAL L . n A 1 121 PHE 121 116 116 PHE PHE L . n A 1 122 ILE 122 117 117 ILE ILE L . n A 1 123 PHE 123 118 118 PHE PHE L . n A 1 124 PRO 124 119 119 PRO PRO L . n A 1 125 PRO 125 120 120 PRO PRO L . n A 1 126 SER 126 121 121 SER SER L . n A 1 127 ASP 127 122 122 ASP ASP L . n A 1 128 GLU 128 123 123 GLU GLU L . n A 1 129 GLN 129 124 124 GLN GLN L . n A 1 130 LEU 130 125 125 LEU LEU L . n A 1 131 LYS 131 126 126 LYS LYS L . n A 1 132 SER 132 127 127 SER SER L . n A 1 133 GLY 133 128 128 GLY GLY L . n A 1 134 THR 134 129 129 THR THR L . n A 1 135 ALA 135 130 130 ALA ALA L . n A 1 136 SER 136 131 131 SER SER L . n A 1 137 VAL 137 132 132 VAL VAL L . n A 1 138 VAL 138 133 133 VAL VAL L . n A 1 139 CYS 139 134 134 CYS CYS L . n A 1 140 LEU 140 135 135 LEU LEU L . n A 1 141 LEU 141 136 136 LEU LEU L . n A 1 142 ASN 142 137 137 ASN ASN L . n A 1 143 ASN 143 138 138 ASN ASN L . n A 1 144 PHE 144 139 139 PHE PHE L . n A 1 145 TYR 145 140 140 TYR TYR L . n A 1 146 PRO 146 141 141 PRO PRO L . n A 1 147 ARG 147 142 142 ARG ARG L . n A 1 148 GLU 148 143 143 GLU GLU L . n A 1 149 ALA 149 144 144 ALA ALA L . n A 1 150 LYS 150 145 145 LYS LYS L . n A 1 151 VAL 151 146 146 VAL VAL L . n A 1 152 GLN 152 147 147 GLN GLN L . n A 1 153 TRP 153 148 148 TRP TRP L . n A 1 154 LYS 154 149 149 LYS LYS L . n A 1 155 VAL 155 150 150 VAL VAL L . n A 1 156 ASP 156 151 151 ASP ASP L . n A 1 157 ASN 157 152 152 ASN ASN L . n A 1 158 ALA 158 153 153 ALA ALA L . n A 1 159 LEU 159 154 154 LEU LEU L . n A 1 160 GLN 160 155 155 GLN GLN L . n A 1 161 SER 161 156 156 SER SER L . n A 1 162 GLY 162 157 157 GLY GLY L . n A 1 163 ASN 163 158 158 ASN ASN L . n A 1 164 SER 164 159 159 SER SER L . n A 1 165 GLN 165 160 160 GLN GLN L . n A 1 166 GLU 166 161 161 GLU GLU L . n A 1 167 SER 167 162 162 SER SER L . n A 1 168 VAL 168 163 163 VAL VAL L . n A 1 169 THR 169 164 164 THR THR L . n A 1 170 GLU 170 165 165 GLU GLU L . n A 1 171 GLN 171 166 166 GLN GLN L . n A 1 172 ASP 172 167 167 ASP ASP L . n A 1 173 SER 173 168 168 SER SER L . n A 1 174 LYS 174 169 169 LYS LYS L . n A 1 175 ASP 175 170 170 ASP ASP L . n A 1 176 SER 176 171 171 SER SER L . n A 1 177 THR 177 172 172 THR THR L . n A 1 178 TYR 178 173 173 TYR TYR L . n A 1 179 SER 179 174 174 SER SER L . n A 1 180 LEU 180 175 175 LEU LEU L . n A 1 181 SER 181 176 176 SER SER L . n A 1 182 SER 182 177 177 SER SER L . n A 1 183 THR 183 178 178 THR THR L . n A 1 184 LEU 184 179 179 LEU LEU L . n A 1 185 THR 185 180 180 THR THR L . n A 1 186 LEU 186 181 181 LEU LEU L . n A 1 187 SER 187 182 182 SER SER L . n A 1 188 LYS 188 183 183 LYS LYS L . n A 1 189 ALA 189 184 184 ALA ALA L . n A 1 190 ASP 190 185 185 ASP ASP L . n A 1 191 TYR 191 186 186 TYR TYR L . n A 1 192 GLU 192 187 187 GLU GLU L . n A 1 193 LYS 193 188 188 LYS LYS L . n A 1 194 HIS 194 189 189 HIS HIS L . n A 1 195 LYS 195 190 190 LYS LYS L . n A 1 196 VAL 196 191 191 VAL VAL L . n A 1 197 TYR 197 192 192 TYR TYR L . n A 1 198 ALA 198 193 193 ALA ALA L . n A 1 199 CYS 199 194 194 CYS CYS L . n A 1 200 GLU 200 195 195 GLU GLU L . n A 1 201 VAL 201 196 196 VAL VAL L . n A 1 202 THR 202 197 197 THR THR L . n A 1 203 HIS 203 198 198 HIS HIS L . n A 1 204 GLN 204 199 199 GLN GLN L . n A 1 205 GLY 205 200 200 GLY GLY L . n A 1 206 LEU 206 201 201 LEU LEU L . n A 1 207 SER 207 202 202 SER SER L . n A 1 208 SER 208 203 203 SER SER L . n A 1 209 PRO 209 204 204 PRO PRO L . n A 1 210 VAL 210 205 205 VAL VAL L . n A 1 211 THR 211 206 206 THR THR L . n A 1 212 LYS 212 207 207 LYS LYS L . n A 1 213 SER 213 208 208 SER SER L . n A 1 214 PHE 214 209 209 PHE PHE L . n A 1 215 ASN 215 210 210 ASN ASN L . n A 1 216 ARG 216 211 211 ARG ARG L . n A 1 217 GLY 217 212 212 GLY GLY L . n A 1 218 GLU 218 213 213 GLU GLU L . n A 1 219 CYS 219 214 214 CYS CYS L . n B 2 1 GLU 1 1 1 GLU GLU H . n B 2 2 VAL 2 2 2 VAL VAL H . n B 2 3 ASN 3 3 3 ASN ASN H . n B 2 4 LEU 4 4 4 LEU LEU H . n B 2 5 VAL 5 5 5 VAL VAL H . n B 2 6 GLU 6 6 6 GLU GLU H . n B 2 7 SER 7 7 7 SER SER H . n B 2 8 GLY 8 8 8 GLY GLY H . n B 2 9 GLY 9 9 9 GLY GLY H . n B 2 10 GLY 10 10 10 GLY GLY H . n B 2 11 LEU 11 11 11 LEU LEU H . n B 2 12 VAL 12 12 12 VAL VAL H . n B 2 13 GLN 13 13 13 GLN GLN H . n B 2 14 PRO 14 14 14 PRO PRO H . n B 2 15 GLY 15 15 15 GLY GLY H . n B 2 16 GLY 16 16 16 GLY GLY H . n B 2 17 SER 17 17 17 SER SER H . n B 2 18 LEU 18 18 18 LEU LEU H . n B 2 19 LYS 19 19 19 LYS LYS H . n B 2 20 VAL 20 20 20 VAL VAL H . n B 2 21 SER 21 21 21 SER SER H . n B 2 22 CYS 22 22 22 CYS CYS H . n B 2 23 VAL 23 23 23 VAL VAL H . n B 2 24 THR 24 24 24 THR THR H . n B 2 25 SER 25 25 25 SER SER H . n B 2 26 GLY 26 26 26 GLY GLY H . n B 2 27 PHE 27 27 27 PHE PHE H . n B 2 28 THR 28 28 28 THR THR H . n B 2 29 PHE 29 29 29 PHE PHE H . n B 2 30 SER 30 30 30 SER SER H . n B 2 31 ASP 31 31 31 ASP ASP H . n B 2 32 TYR 32 32 32 TYR TYR H . n B 2 33 TYR 33 33 33 TYR TYR H . n B 2 34 MET 34 34 34 MET MET H . n B 2 35 TYR 35 35 35 TYR TYR H . n B 2 36 TRP 36 36 36 TRP TRP H . n B 2 37 VAL 37 37 37 VAL VAL H . n B 2 38 ARG 38 38 38 ARG ARG H . n B 2 39 GLN 39 39 39 GLN GLN H . n B 2 40 THR 40 40 40 THR THR H . n B 2 41 PRO 41 41 41 PRO PRO H . n B 2 42 GLU 42 42 42 GLU GLU H . n B 2 43 LYS 43 43 43 LYS LYS H . n B 2 44 ARG 44 44 44 ARG ARG H . n B 2 45 LEU 45 45 45 LEU LEU H . n B 2 46 GLU 46 46 46 GLU GLU H . n B 2 47 TRP 47 47 47 TRP TRP H . n B 2 48 VAL 48 48 48 VAL VAL H . n B 2 49 ALA 49 49 49 ALA ALA H . n B 2 50 TYR 50 50 50 TYR TYR H . n B 2 51 ILE 51 51 51 ILE ILE H . n B 2 52 SER 52 52 52 SER SER H . n B 2 53 GLN 53 52 52 GLN GLN H A n B 2 54 GLY 54 53 53 GLY GLY H . n B 2 55 GLY 55 54 54 GLY GLY H . n B 2 56 ASP 56 55 55 ASP ASP H . n B 2 57 ILE 57 56 56 ILE ILE H . n B 2 58 THR 58 57 57 THR THR H . n B 2 59 ASP 59 58 58 ASP ASP H . n B 2 60 TYR 60 59 59 TYR TYR H . n B 2 61 PRO 61 60 60 PRO PRO H . n B 2 62 ASP 62 61 61 ASP ASP H . n B 2 63 THR 63 62 62 THR THR H . n B 2 64 VAL 64 63 63 VAL VAL H . n B 2 65 LYS 65 64 64 LYS LYS H . n B 2 66 GLY 66 65 65 GLY GLY H . n B 2 67 ARG 67 66 66 ARG ARG H . n B 2 68 PHE 68 67 67 PHE PHE H . n B 2 69 THR 69 68 68 THR THR H . n B 2 70 ILE 70 69 69 ILE ILE H . n B 2 71 SER 71 70 70 SER SER H . n B 2 72 ARG 72 71 71 ARG ARG H . n B 2 73 ASP 73 72 72 ASP ASP H . n B 2 74 ASN 74 73 73 ASN ASN H . n B 2 75 ALA 75 74 74 ALA ALA H . n B 2 76 LYS 76 75 75 LYS LYS H . n B 2 77 ASN 77 76 76 ASN ASN H . n B 2 78 SER 78 77 77 SER SER H . n B 2 79 LEU 79 78 78 LEU LEU H . n B 2 80 TYR 80 79 79 TYR TYR H . n B 2 81 LEU 81 80 80 LEU LEU H . n B 2 82 GLN 82 81 81 GLN GLN H . n B 2 83 MET 83 82 82 MET MET H . n B 2 84 SER 84 82 82 SER SER H A n B 2 85 ARG 85 82 82 ARG ARG H B n B 2 86 LEU 86 82 82 LEU LEU H C n B 2 87 LYS 87 83 83 LYS LYS H . n B 2 88 SER 88 84 84 SER SER H . n B 2 89 GLU 89 85 85 GLU GLU H . n B 2 90 ASP 90 86 86 ASP ASP H . n B 2 91 THR 91 87 87 THR THR H . n B 2 92 ALA 92 88 88 ALA ALA H . n B 2 93 MET 93 89 89 MET MET H . n B 2 94 TYR 94 90 90 TYR TYR H . n B 2 95 TYR 95 91 91 TYR TYR H . n B 2 96 CYS 96 92 92 CYS CYS H . n B 2 97 ALA 97 93 93 ALA ALA H . n B 2 98 ARG 98 94 94 ARG ARG H . n B 2 99 GLY 99 95 95 GLY GLY H . n B 2 100 LEU 100 96 96 LEU LEU H . n B 2 101 ASP 101 97 97 ASP ASP H . n B 2 102 ASP 102 98 98 ASP ASP H . n B 2 103 GLY 103 99 99 GLY GLY H . n B 2 104 ALA 104 100 100 ALA ALA H . n B 2 105 TRP 105 100 100 TRP TRP H A n B 2 106 PHE 106 100 100 PHE PHE H B n B 2 107 ALA 107 101 101 ALA ALA H . n B 2 108 TYR 108 102 102 TYR TYR H . n B 2 109 TRP 109 103 103 TRP TRP H . n B 2 110 GLY 110 104 104 GLY GLY H . n B 2 111 GLN 111 105 105 GLN GLN H . n B 2 112 GLY 112 106 106 GLY GLY H . n B 2 113 THR 113 107 107 THR THR H . n B 2 114 LEU 114 108 108 LEU LEU H . n B 2 115 VAL 115 109 109 VAL VAL H . n B 2 116 THR 116 110 110 THR THR H . n B 2 117 VAL 117 111 111 VAL VAL H . n B 2 118 SER 118 112 112 SER SER H . n B 2 119 VAL 119 113 113 VAL VAL H . n B 2 120 ALA 120 114 114 ALA ALA H . n B 2 121 SER 121 115 115 SER SER H . n B 2 122 THR 122 116 116 THR THR H . n B 2 123 LYS 123 117 117 LYS LYS H . n B 2 124 GLY 124 118 118 GLY GLY H . n B 2 125 PRO 125 119 119 PRO PRO H . n B 2 126 SER 126 120 120 SER SER H . n B 2 127 VAL 127 121 121 VAL VAL H . n B 2 128 PHE 128 122 122 PHE PHE H . n B 2 129 PRO 129 123 123 PRO PRO H . n B 2 130 LEU 130 124 124 LEU LEU H . n B 2 131 ALA 131 125 125 ALA ALA H . n B 2 132 PRO 132 126 126 PRO PRO H . n B 2 133 SER 133 127 127 SER SER H . n B 2 134 SER 134 128 128 SER SER H . n B 2 135 LYS 135 129 129 LYS LYS H . n B 2 136 SER 136 130 130 SER SER H . n B 2 137 THR 137 133 133 THR THR H . n B 2 138 SER 138 134 134 SER SER H . n B 2 139 GLY 139 135 135 GLY GLY H . n B 2 140 GLY 140 136 136 GLY GLY H . n B 2 141 THR 141 137 137 THR THR H . n B 2 142 ALA 142 138 138 ALA ALA H . n B 2 143 ALA 143 139 139 ALA ALA H . n B 2 144 LEU 144 140 140 LEU LEU H . n B 2 145 GLY 145 141 141 GLY GLY H . n B 2 146 CYS 146 142 142 CYS CYS H . n B 2 147 LEU 147 143 143 LEU LEU H . n B 2 148 VAL 148 144 144 VAL VAL H . n B 2 149 LYS 149 145 145 LYS LYS H . n B 2 150 ASP 150 146 146 ASP ASP H . n B 2 151 TYR 151 147 147 TYR TYR H . n B 2 152 PHE 152 148 148 PHE PHE H . n B 2 153 PRO 153 149 149 PRO PRO H . n B 2 154 GLN 154 150 150 GLN GLN H . n B 2 155 PRO 155 151 151 PRO PRO H . n B 2 156 VAL 156 152 152 VAL VAL H . n B 2 157 THR 157 153 153 THR THR H . n B 2 158 VAL 158 154 154 VAL VAL H . n B 2 159 SER 159 156 156 SER SER H . n B 2 160 TRP 160 157 157 TRP TRP H . n B 2 161 ASN 161 162 162 ASN ASN H . n B 2 162 SER 162 163 163 SER SER H . n B 2 163 GLY 163 164 164 GLY GLY H . n B 2 164 ALA 164 165 165 ALA ALA H . n B 2 165 LEU 165 166 166 LEU LEU H . n B 2 166 THR 166 167 167 THR THR H . n B 2 167 SER 167 168 168 SER SER H . n B 2 168 GLY 168 169 169 GLY GLY H . n B 2 169 VAL 169 171 171 VAL VAL H . n B 2 170 HIS 170 172 172 HIS HIS H . n B 2 171 THR 171 173 173 THR THR H . n B 2 172 PHE 172 174 174 PHE PHE H . n B 2 173 PRO 173 175 175 PRO PRO H . n B 2 174 ALA 174 176 176 ALA ALA H . n B 2 175 VAL 175 177 177 VAL VAL H . n B 2 176 LEU 176 178 178 LEU LEU H . n B 2 177 GLN 177 179 179 GLN GLN H . n B 2 178 SER 178 180 180 SER SER H . n B 2 179 SER 179 182 182 SER SER H . n B 2 180 GLY 180 183 183 GLY GLY H . n B 2 181 LEU 181 184 184 LEU LEU H . n B 2 182 TYR 182 185 185 TYR TYR H . n B 2 183 SER 183 186 186 SER SER H . n B 2 184 LEU 184 187 187 LEU LEU H . n B 2 185 SER 185 188 188 SER SER H . n B 2 186 SER 186 189 189 SER SER H . n B 2 187 VAL 187 190 190 VAL VAL H . n B 2 188 VAL 188 191 191 VAL VAL H . n B 2 189 THR 189 192 192 THR THR H . n B 2 190 VAL 190 193 193 VAL VAL H . n B 2 191 PRO 191 194 194 PRO PRO H . n B 2 192 SER 192 195 195 SER SER H . n B 2 193 SER 193 196 196 SER SER H . n B 2 194 SER 194 197 197 SER SER H . n B 2 195 LEU 195 198 198 LEU LEU H . n B 2 196 GLY 196 199 199 GLY GLY H . n B 2 197 THR 197 200 200 THR THR H . n B 2 198 GLN 198 203 203 GLN GLN H . n B 2 199 THR 199 205 205 THR THR H . n B 2 200 TYR 200 206 206 TYR TYR H . n B 2 201 ILE 201 207 207 ILE ILE H . n B 2 202 CYS 202 208 208 CYS CYS H . n B 2 203 ASN 203 209 209 ASN ASN H . n B 2 204 VAL 204 210 210 VAL VAL H . n B 2 205 ASN 205 211 211 ASN ASN H . n B 2 206 HIS 206 212 212 HIS HIS H . n B 2 207 LYS 207 213 213 LYS LYS H . n B 2 208 PRO 208 214 214 PRO PRO H . n B 2 209 SER 209 215 215 SER SER H . n B 2 210 ASN 210 216 216 ASN ASN H . n B 2 211 THR 211 217 217 THR THR H . n B 2 212 LYS 212 218 218 LYS LYS H . n B 2 213 VAL 213 219 219 VAL VAL H . n B 2 214 ASP 214 220 220 ASP ASP H . n B 2 215 LYS 215 221 221 LYS LYS H . n B 2 216 ARG 216 222 222 ARG ARG H . n B 2 217 VAL 217 223 223 VAL VAL H . n B 2 218 GLU 218 226 226 GLU GLU H . n B 2 219 PRO 219 227 227 PRO PRO H . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NON _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 232 _pdbx_nonpoly_scheme.auth_seq_num 5 _pdbx_nonpoly_scheme.pdb_mon_id NON _pdbx_nonpoly_scheme.auth_mon_id NON _pdbx_nonpoly_scheme.pdb_strand_id H _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_molecule_features.prd_id PRD_900054 _pdbx_molecule_features.name 'Lewis Y antigen, beta anomer' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Antigen _pdbx_molecule_features.details 'oligosaccharide with branches' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900054 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5640 ? 1 MORE -2 ? 1 'SSA (A^2)' 18870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-08-01 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' Other 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' entity_name_com 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_molecule_features 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' pdbx_struct_assembly_gen 16 4 'Structure model' pdbx_unobs_or_zero_occ_residues 17 4 'Structure model' struct_asym 18 4 'Structure model' struct_conn 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_pdbx_database_status.process_site' 17 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal R-AXIS 'data collection' . ? 1 R-AXIS 'data reduction' . ? 2 X-PLOR refinement . ? 3 R-AXIS 'data scaling' . ? 4 # _pdbx_entry_details.entry_id 1CLY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE FAB LIGHT CHAIN (RESIDUES 1 - 214) HAS BEEN ASSIGNED CHAIN INDICATOR L. THE FAB HEAVY CHAIN (RESIDUES 1 - 231) HAS BEEN ASSIGNED CHAIN INDICATOR H. THE FAB FRAGMENT IS NUMBERED BY THE CONVENTION OF E. KABAT (E.A. KABAT, T.T. WU, H.M. PERRY, K.S. GOTTESMAN, C. FOELLER SEQUENCES OF PROTEINS OF IMMUNOLOGICAL INTEREST, 5TH ED., (1991), NATIONAL INSTITUTES OF HEALTH, BETHESDA, MD.). ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS L 27 D ? -86.90 -121.07 2 1 ASN L 27 E ? -86.44 40.63 3 1 ASN L 28 ? ? 58.46 6.76 4 1 ASN L 30 ? ? 73.27 165.54 5 1 VAL L 51 ? ? 67.40 -48.39 6 1 ASP L 60 ? ? -64.96 2.58 7 1 THR L 129 ? ? -47.97 106.82 8 1 ASN L 138 ? ? 19.64 82.60 9 1 PRO L 141 ? ? -65.32 -172.92 10 1 ASP L 151 ? ? 66.78 -71.97 11 1 ASN L 152 ? ? -159.68 9.30 12 1 ASN L 158 ? ? -75.42 43.47 13 1 ASP L 170 ? ? -153.32 8.11 14 1 LYS L 183 ? ? -25.95 -50.95 15 1 ALA H 88 ? ? -175.77 -176.43 16 1 PHE H 100 B ? -112.55 72.79 17 1 SER H 128 ? ? -162.12 -43.28 18 1 SER H 130 ? ? -175.60 -22.94 19 1 THR H 137 ? ? -175.00 138.41 20 1 ASP H 146 ? ? 43.36 98.02 21 1 PHE H 148 ? ? -173.31 139.61 22 1 ALA H 165 ? ? -95.66 41.68 23 1 LEU H 166 ? ? -172.72 82.01 24 1 THR H 167 ? ? -90.95 -72.35 25 1 GLN H 179 ? ? -58.74 -179.22 26 1 HIS H 212 ? ? -117.57 78.38 27 1 PRO H 214 ? ? -57.33 -7.03 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 H GLU 1 ? CG ? B GLU 1 CG 2 1 Y 1 H GLU 1 ? CD ? B GLU 1 CD 3 1 Y 1 H GLU 1 ? OE1 ? B GLU 1 OE1 4 1 Y 1 H GLU 1 ? OE2 ? B GLU 1 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L ASP 1 ? A ASP 1 2 1 Y 1 L VAL 2 ? A VAL 2 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 NAG 1 A NAG 1 Y NAG 3 n C 3 GAL 2 A GAL 2 Y GAL 2 n C 3 FUC 3 A FUC 3 Y FUC 1 n C 3 FUC 4 A FUC 4 Y FUC 4 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 3 'WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-2/a3-b1_a4-c1_c2-d1' WURCS PDB2Glycan 1.1.0 3 3 '[][b-D-GlcpNAc]{[(3+1)][a-L-Fucp]{}[(4+1)][b-D-Galp]{[(2+1)][a-L-Fucp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 GAL C1 O1 1 NAG O4 HO4 sing ? 2 3 3 FUC C1 O1 2 GAL O2 HO2 sing ? 3 3 4 FUC C1 O1 1 NAG O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 GAL 2 n 3 FUC 3 n 3 FUC 4 n # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'METHYL NONANOATE (ESTER)' _pdbx_entity_nonpoly.comp_id NON #