HEADER RIBOSOME/RNA 26-MAY-99 1CN8 OBSLTE 25-JUL-06 1CN8 1T0K TITLE RIBOSOMAL PROTEIN L30-MRNA COMPLEX FROM YEAST COMPND MOL_ID: 1; COMPND 2 MOLECULE: 60S RIBOSOMAL PROTEIN L30E; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: YL32, RP73; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RIBOSOMAL RNA YL32; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: YEAST L30 PRE-MRNA BINDING SITE; COMPND 10 SYNONYM: RPL32,YGL030W; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANELLE: RIBOSOME,60S SUBUNIT; SOURCE 5 CELLULAR_LOCATION: CYTOPLASM; SOURCE 6 GENE: YSCRPL32; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 10 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMALC-L30; SOURCE 12 EXPRESSION_SYSTEM_GENE: L30; SOURCE 13 OTHER_DETAILS: RECOMBINANT EXPRESSION AS A C-TERMINAL SOURCE 14 MALTOSE-BINDING PROTEIN FUSION IN ESCHERICHIA COLI STRAIN SOURCE 15 JM109 HOSTING PLASMID PMALC-30; SOURCE 16 MOL_ID: 2; SOURCE 17 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 18 ORGANISM_COMMON: YEAST; SOURCE 19 CELLULAR_LOCATION: NUCLEI; SOURCE 20 GENE: YSCRPL32; SOURCE 21 OTHER_DETAILS: SYNTHESIZED USING IN VITRO T7 POLYMERASE KEYWDS RIBOSOMAL PROTEIN, PRE-MRNA, MRNA, AUTOREGULATION, PROTEIN- KEYWDS 2 RNA COMPLEX EXPDTA NMR AUTHOR H.MAO,S.A.WHITE,J.R.WILLAMSON REVDAT 3 25-JUL-06 1CN8 1 OBSLTE REVDAT 2 01-APR-03 1CN8 1 JRNL REVDAT 1 19-NOV-99 1CN8 0 JRNL AUTH H.MAO,S.A.WHITE,J.R.WILLIAMSON JRNL TITL A NOVEL LOOP-LOOP RECOGNITION MOTIF IN THE YEAST JRNL TITL 2 RIBOSOMAL PROTEIN L30 AUTOREGULATORY RNA COMPLEX. JRNL REF NAT.STRUCT.BIOL. V. 6 1139 1999 JRNL REFN ASTM NSBIEW US ISSN 1072-8368 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.LI,S.DALAL,J.KOHLER,J.VILARDELL,S.A.WHITE REMARK 1 TITL CHARACTERIZATION OF THE PRE-MRNA BINDING SITE FOR REMARK 1 TITL 2 YEAST RIBOSOMAL PROTEIN L32: THE IMPORTANCE OF A REMARK 1 TITL 3 PURINE-RICH LOOP REMARK 1 REF J.MOL.BIOL. V. 250 447 1995 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.J.ENG,J.R.WARNER REMARK 1 TITL STRUCTURAL BASIS FOR THE REGULATION OF SPLICING OF REMARK 1 TITL 2 A YEAST MESSENGER RNA REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 65 797 1991 REMARK 1 REFN ASTM CELLB5 US ISSN 0092-8674 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CONSTRAINTS DISTANCE PROTEIN REMARK 3 INTRARESIDUE NOES 898; INTERRESIDUE NOES 1175; SEQUENTIAL (|I- REMARK 3 J|=1) 512; SHORT-RANGE (|I-J|<=4) 328; LONG-RANGE (|I-J|>4) REMARK 3 335; HYDROGEN BONDS 56; TOTAL 2129; RNA INTRARESIDUE NOES 249; REMARK 3 INTERRESIDUE NOES 221; SEQUENTIAL (|I-J|=1) 159; SHORT-RANGE REMARK 3 (|I-J|<=4) 12; LONG-RANGE (|I-J|>1) 50; HYDROGEN BONDS 77; REMARK 3 TOTAL 547; PROTEIN-RNA INTRARMOLECULE NOES 73; TORSION PROTEIN REMARK 3 BACKBONE PHI 76; SIDECHAIN KAI1 59; TOTAL 135; RNA GLYCOSIDIC REMARK 3 KAI, DETLA AND AMINO 107; TOTAL 107 REMARK 4 REMARK 4 1CN8 COMPLIES WITH FORMAT V. 3.0, 1-DEC-2006 REMARK 4 REMARK 4 THIS FILE IS A TEST VERSION. REMARK 4 REMARK 4 THIS IS THE REMEDIATED VERSION OF THIS PDB ENTRY. REMARK 4 REMEDIATED DATA FILE REVISION 3.100 (2007-03-19) REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-1999. REMARK 100 THE RCSB ID CODE IS RCSB001111. REMARK 105 REMARK 105 THE PROTEIN DATA BANK HAS ADOPTED THE SACCHARIDE CHEMISTS REMARK 105 NOMENCLATURE FOR ATOMS OF THE DEOXYRIBOSE/RIBOSE MOIETY REMARK 105 RATHER THAN THAT OF THE NUCLEOSIDE CHEMISTS. THE RING REMARK 105 OXYGEN ATOM IS LABELLED O4' INSTEAD OF O1'. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 10 MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10% WATER/90% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY, COSY, TOCSY, HNCA, REMARK 210 HNCO, HN(CO)CA, HNCACB, REMARK 210 HCCHTOCSY, NOESYHSQC, HNHA, REMARK 210 HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING MOLECULAR REMARK 210 DYNAMIC REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: MEAN STRUCTURE. THIS STRUCTURE WAS DETERMINED USING REMARK 210 TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED L30 REMARK 210 PROTEIN AND 13C, 15N-LABELED RNA IN COMPLEXED WITH THEIR REMARK 210 UNLABELED COUNTERPARTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 39 LYS A 40 146.69 REMARK 500 ALA A 95 GLY A 96 -116.48 REMARK 999 REMARK 999 SEQUENCE REMARK 999 LI ET.AL.(1995). J.MOL.BIOL. 250, 447. REMARK 999 DEBEVA ET AL. (1987). J.BIOL.CHEM. 262, 16055. DBREF 1CN8 A 2 105 UNP P14120 RL30_YEAST 2 105 SEQRES 1 A 104 ALA PRO VAL LYS SER GLN GLU SER ILE ASN GLN LYS LEU SEQRES 2 A 104 ALA LEU VAL ILE LYS SER GLY LYS TYR THR LEU GLY TYR SEQRES 3 A 104 LYS SER THR VAL LYS SER LEU ARG GLN GLY LYS SER LYS SEQRES 4 A 104 LEU ILE ILE ILE ALA ALA ASN THR PRO VAL LEU ARG LYS SEQRES 5 A 104 SER GLU LEU GLU TYR TYR ALA MET LEU SER LYS THR LYS SEQRES 6 A 104 VAL TYR TYR PHE GLN GLY GLY ASN ASN GLU LEU GLY THR SEQRES 7 A 104 ALA VAL GLY LYS LEU PHE ARG VAL GLY VAL VAL SER ILE SEQRES 8 A 104 LEU GLU ALA GLY ASP SER ASP ILE LEU THR THR LEU ALA SEQRES 1 B 33 G G A C C G G A G U G U C SEQRES 2 B 33 G C A A G A C G C A G A G SEQRES 3 B 33 A U G G U C C HELIX 1 1 GLU A 8 ILE A 18 5 11 HELIX 2 2 LYS A 28 GLN A 36 1 9 HELIX 3 3 VAL A 50 SER A 63 1 14 HELIX 4 4 GLY A 73 ALA A 80 1 8 HELIX 5 5 ILE A 100 THR A 103 1 4 SHEET 1 A 4 TYR A 23 LEU A 25 0 SHEET 2 A 4 VAL A 89 ILE A 92 -1 N SER A 91 O THR A 24 SHEET 3 A 4 ILE A 42 ALA A 45 -1 N ILE A 43 O VAL A 90 SHEET 4 A 4 VAL A 67 PHE A 70 1 N TYR A 68 O ILE A 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000