data_1CP8 # _entry.id 1CP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1CP8 RCSB RCSB001176 WWPDB D_1000001176 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CP8 _pdbx_database_status.recvd_initial_deposition_date 1999-06-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Katahira, R.' 1 'Katahira, M.' 2 'Yamashita, Y.' 3 'Ogawa, H.' 4 'Kyogoku, Y.' 5 'Yoshida, M.' 6 # _citation.id primary _citation.title 'Solution structure of the novel antitumor drug UCH9 complexed with d(TTGGCCAA)2 as determined by NMR.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 26 _citation.page_first 744 _citation.page_last 755 _citation.year 1998 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9443966 _citation.pdbx_database_id_DOI 10.1093/nar/26.3.744 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Katahira, R.' 1 ? primary 'Katahira, M.' 2 ? primary 'Yamashita, Y.' 3 ? primary 'Ogawa, H.' 4 ? primary 'Kyogoku, Y.' 5 ? primary 'Yoshida, M.' 6 ? # _cell.entry_id 1CP8 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CP8 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*TP*TP*GP*GP*CP*CP*AP*A)-3') ; 2426.617 2 ? ? ? ;TWO MOLECULES OF THE DRUG UCH9 (DDA-DXA-DDA-DDL-DRI-DDA) BOUND IN THE MINOR GROOVE THE MODEL CONTAINS TWO MOLECULES OF UCH9 AND ONE MG CATION WHICH IS COORDINATED TO TWO UCH9 MOLECULES. IN THIS ENTRY UCH9 IS PRESENTED AS HET GROUP, DDA-DXA-DDA-DDL-DRI-DDA. THESE GROUPS ARE NUMBERED 1-6 FOR ONE UCH9 AND 7-12 FOR THE OTHER UCH9. ; 2 branched syn ;beta-D-Olivopyranose-(1-3)-2,6-dideoxy-4-O-methyl-beta-D-glucopyranose-(1-3)-2,6-dideoxy-beta-D-galactopyranose-(1-3)-beta-D-Olivopyranose ; 552.609 2 ? ? ? ;UCH9 WAS ISOLATED FROM STREPTOMYCES SP. THE DETAILS ARE SHOWN IN THE FOLLOWING PAPER: J. ANTIBIOTICS 51, 261-266, ; 3 non-polymer syn beta-D-Olivopyranose 148.157 2 ? ? ? ;UCH9 WAS ISOLATED FROM STREPTOMYCES SP. THE DETAILS ARE SHOWN IN THE FOLLOWING PAPER: J. ANTIBIOTICS 51, 261-266, ; 4 non-polymer syn '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE' 430.491 2 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DG)(DG)(DC)(DC)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTGGCCAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DA n 1 8 DA n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1CP8 _struct_ref.pdbx_db_accession 1CP8 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1CP8 A 1 ? 8 ? 1CP8 1 ? 8 ? 1 8 2 1 1CP8 B 1 ? 8 ? 1CP8 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDA 'D-saccharide, beta linking' . beta-D-Olivopyranose 2,6-DIDEOXY-BETA-D-MANNOSE 'C6 H12 O4' 148.157 DDL 'D-saccharide, beta linking' . 2,6-dideoxy-beta-D-galactopyranose 2,6-DIDEOXY-BETA-D-TALOSE 'C6 H12 O4' 148.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DRI 'D-saccharide, beta linking' . 2,6-dideoxy-4-O-methyl-beta-D-glucopyranose 4-O-METHYL-2,6-DIDEOXY-BETA-D-MANNOSE 'C7 H14 O4' 162.184 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DXA non-polymer . '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE' ? 'C24 H30 O7' 430.491 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 DQF-COSY 1 3 1 TOCSY 1 4 1 E.COSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.9 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '10% WATER/90% D2O, 100% D2O' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1CP8 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. THE ABSOLUTE CONFIGURATION OF THE HYDROPHILIC SIDECHAIN HAS NOT BEEN DETERMINED. IN THIS MODEL, IT WAS SET TO THE SAME CONFIGURATION AS THAT OF THE OTHER AUREOLIC ACID GROUP COMPOUNDS, SUCH AS CHROMOMYCIN A3. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1CP8 _pdbx_nmr_details.text 'BEST STRUCTURE' # _pdbx_nmr_ensemble.entry_id 1CP8 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1CP8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' X-PLOR ? ? 2 # _exptl.entry_id 1CP8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1CP8 _struct.title ;NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9 ; _struct.pdbx_descriptor ;5'-D(P*TP*TP*GP*GP*CP*CP*AP*A)-3', ANTITUMOR DRUG UCH9 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CP8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? E DDA . O1 ? ? ? 1_555 F DXA . C6 ? ? A DDA 13 A DXA 14 1_555 ? ? ? ? ? ? ? 1.406 ? ? covale2 covale one ? F DXA . C2 ? ? ? 1_555 C DDA . O1 ? ? A DXA 14 C DDA 1 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale3 covale one ? G DDA . O1 ? ? ? 1_555 I DXA . C6 ? ? B DDA 13 B DXA 15 1_555 ? ? ? ? ? ? ? 1.406 ? ? covale4 covale one ? I DXA . C2 ? ? ? 1_555 D DDA . O1 ? ? B DXA 15 D DDA 1 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale5 covale both ? C DDA . O3 ? ? ? 1_555 C DDL . C1 ? ? C DDA 1 C DDL 2 1_555 ? ? ? ? ? ? ? 1.417 sing ? covale6 covale both ? C DDL . O3 ? ? ? 1_555 C DRI . C1 ? ? C DDL 2 C DRI 3 1_555 ? ? ? ? ? ? ? 1.427 sing ? covale7 covale both ? C DRI . O3 ? ? ? 1_555 C DDA . C1 ? ? C DRI 3 C DDA 4 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale8 covale both ? D DDA . O3 ? ? ? 1_555 D DDL . C1 ? ? D DDA 1 D DDL 2 1_555 ? ? ? ? ? ? ? 1.418 sing ? covale9 covale both ? D DDL . O3 ? ? ? 1_555 D DRI . C1 ? ? D DDL 2 D DRI 3 1_555 ? ? ? ? ? ? ? 1.427 sing ? covale10 covale both ? D DRI . O3 ? ? ? 1_555 D DDA . C1 ? ? D DRI 3 D DDA 4 1_555 ? ? ? ? ? ? ? 1.419 ? ? metalc1 metalc ? ? F DXA . O1 ? ? ? 1_555 H MG . MG ? ? A DXA 14 B MG 14 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc2 metalc ? ? F DXA . O9 ? ? ? 1_555 H MG . MG ? ? A DXA 14 B MG 14 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc3 metalc ? ? H MG . MG ? ? ? 1_555 I DXA . O9 ? ? B MG 14 B DXA 15 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc4 metalc ? ? H MG . MG ? ? ? 1_555 I DXA . O1 ? ? B MG 14 B DXA 15 1_555 ? ? ? ? ? ? ? 2.538 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 1 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 1 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 2 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 2 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 4 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 4 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 4 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 5 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 5 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 5 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 7 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 7 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 8 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 8 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1CP8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1CP8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DA 8 8 8 DA A A . n B 1 1 DT 1 1 1 DT T B . n B 1 2 DT 2 2 2 DT T B . n B 1 3 DG 3 3 3 DG G B . n B 1 4 DG 4 4 4 DG G B . n B 1 5 DC 5 5 5 DC C B . n B 1 6 DC 6 6 6 DC C B . n B 1 7 DA 7 7 7 DA A B . n B 1 8 DA 8 8 8 DA A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DDA 1 13 7 DDA DDA A . F 4 DXA 1 14 8 DXA DXA A . G 3 DDA 1 13 1 DDA DDA B . H 5 MG 1 14 13 MG MG B . I 4 DXA 1 15 2 DXA DXA B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O9 ? F DXA . ? A DXA 14 ? 1_555 59.7 ? 2 O1 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O9 ? I DXA . ? B DXA 15 ? 1_555 89.4 ? 3 O9 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O9 ? I DXA . ? B DXA 15 ? 1_555 146.4 ? 4 O1 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O1 ? I DXA . ? B DXA 15 ? 1_555 75.2 ? 5 O9 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O1 ? I DXA . ? B DXA 15 ? 1_555 94.2 ? 6 O9 ? I DXA . ? B DXA 15 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O1 ? I DXA . ? B DXA 15 ? 1_555 63.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-07-01 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly 13 4 'Structure model' pdbx_struct_conn_angle 14 4 'Structure model' pdbx_struct_oper_list 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.value' 26 4 'Structure model' '_struct_conn.pdbx_dist_value' 27 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 28 4 'Structure model' '_struct_conn.pdbx_value_order' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.56 108.30 2.26 0.30 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.46 108.30 4.16 0.30 N 3 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.88 113.10 4.78 0.50 N 4 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.49 106.40 -2.91 0.40 N 5 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.33 108.30 5.03 0.30 N 6 1 N7 A DG 4 ? ? C8 A DG 4 ? ? N9 A DG 4 ? ? 117.66 113.10 4.56 0.50 N 7 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.79 106.40 -2.61 0.40 N 8 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.75 108.30 3.45 0.30 N 9 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.16 108.30 1.86 0.30 N 10 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.30 108.30 3.00 0.30 N 11 1 N7 A DA 7 ? ? C8 A DA 7 ? ? N9 A DA 7 ? ? 117.48 113.80 3.68 0.50 N 12 1 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.69 108.30 3.39 0.30 N 13 1 N7 A DA 8 ? ? C8 A DA 8 ? ? N9 A DA 8 ? ? 117.78 113.80 3.98 0.50 N 14 1 "O4'" B DT 1 ? ? "C1'" B DT 1 ? ? N1 B DT 1 ? ? 110.62 108.30 2.32 0.30 N 15 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.47 108.30 4.17 0.30 N 16 1 N7 B DG 3 ? ? C8 B DG 3 ? ? N9 B DG 3 ? ? 117.87 113.10 4.77 0.50 N 17 1 C8 B DG 3 ? ? N9 B DG 3 ? ? C4 B DG 3 ? ? 103.56 106.40 -2.84 0.40 N 18 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 113.31 108.30 5.01 0.30 N 19 1 N7 B DG 4 ? ? C8 B DG 4 ? ? N9 B DG 4 ? ? 117.68 113.10 4.58 0.50 N 20 1 C8 B DG 4 ? ? N9 B DG 4 ? ? C4 B DG 4 ? ? 103.79 106.40 -2.61 0.40 N 21 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.58 108.30 3.28 0.30 N 22 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.14 108.30 1.84 0.30 N 23 1 "O4'" B DA 7 ? ? "C1'" B DA 7 ? ? N9 B DA 7 ? ? 111.36 108.30 3.06 0.30 N 24 1 N7 B DA 7 ? ? C8 B DA 7 ? ? N9 B DA 7 ? ? 117.55 113.80 3.75 0.50 N 25 1 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 111.67 108.30 3.37 0.30 N 26 1 N7 B DA 8 ? ? C8 B DA 8 ? ? N9 B DA 8 ? ? 117.81 113.80 4.01 0.50 N 27 1 C8 B DA 8 ? ? N9 B DA 8 ? ? C4 B DA 8 ? ? 103.34 105.80 -2.46 0.40 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1CP8 'double helix' 1CP8 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 8 1_555 0.156 0.086 0.028 -0.803 0.213 -9.521 1 A_DT1:DA8_B A 1 ? B 8 ? 20 1 1 A DT 2 1_555 B DA 7 1_555 -0.034 0.176 -0.008 -0.997 -0.123 -14.325 2 A_DT2:DA7_B A 2 ? B 7 ? 20 1 1 A DG 3 1_555 B DC 6 1_555 0.646 0.150 0.028 0.424 -0.784 0.642 3 A_DG3:DC6_B A 3 ? B 6 ? 19 1 1 A DG 4 1_555 B DC 5 1_555 0.569 0.152 0.027 0.862 -1.411 0.434 4 A_DG4:DC5_B A 4 ? B 5 ? 19 1 1 A DC 5 1_555 B DG 4 1_555 -0.570 0.152 0.028 -0.911 -1.516 0.283 5 A_DC5:DG4_B A 5 ? B 4 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 -0.631 0.147 0.030 -0.465 -0.782 0.540 6 A_DC6:DG3_B A 6 ? B 3 ? 19 1 1 A DA 7 1_555 B DT 2 1_555 0.032 0.172 -0.007 0.986 -0.056 -14.391 7 A_DA7:DT2_B A 7 ? B 2 ? 20 1 1 A DA 8 1_555 B DT 1 1_555 -0.153 0.081 0.029 0.807 0.231 -9.472 8 A_DA8:DT1_B A 8 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 8 1_555 A DT 2 1_555 B DA 7 1_555 -0.826 -0.298 3.765 -0.457 -2.650 32.674 -0.002 1.372 3.787 -4.701 0.810 32.782 1 AA_DT1DT2:DA7DA8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A DT 2 1_555 B DA 7 1_555 A DG 3 1_555 B DC 6 1_555 1.612 0.438 3.753 -2.333 -8.404 33.571 2.177 -3.106 3.430 -14.253 3.957 34.654 2 AA_DT2DG3:DC6DA7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DG 3 1_555 B DC 6 1_555 A DG 4 1_555 B DC 5 1_555 0.560 -1.504 2.998 -0.759 5.180 29.864 -3.792 -1.205 2.690 9.956 1.459 30.309 3 AA_DG3DG4:DC5DC6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A DG 4 1_555 B DC 5 1_555 A DC 5 1_555 B DG 4 1_555 -0.004 -1.544 3.327 -0.028 -6.645 29.006 -1.518 0.002 3.584 -13.050 0.055 29.742 4 AA_DG4DC5:DG4DC5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A DC 5 1_555 B DG 4 1_555 A DC 6 1_555 B DG 3 1_555 -0.562 -1.509 2.999 0.769 5.252 29.970 -3.796 1.206 2.687 10.057 -1.473 30.426 5 AA_DC5DC6:DG3DG4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A DC 6 1_555 B DG 3 1_555 A DA 7 1_555 B DT 2 1_555 -1.614 0.433 3.750 2.306 -8.441 33.504 2.181 3.110 3.428 -14.341 -3.918 34.596 6 AA_DC6DA7:DT2DG3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A DA 7 1_555 B DT 2 1_555 A DA 8 1_555 B DT 1 1_555 0.829 -0.298 3.765 0.458 -2.697 32.707 0.009 -1.377 3.787 -4.778 -0.812 32.818 7 AA_DA7DA8:DT1DT2_BB A 7 ? B 2 ? A 8 ? B 1 ? # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 DDA 1 C DDA 1 N DDA 9 n C 2 DDL 2 C DDL 2 N DDL 10 n C 2 DRI 3 C DRI 3 N DRI 11 n C 2 DDA 4 C DDA 4 N DDA 12 n D 2 DDA 1 D DDA 1 M DDA 3 n D 2 DDL 2 D DDL 2 M DDL 4 n D 2 DRI 3 D DRI 3 M DRI 5 n D 2 DDA 4 D DDA 4 M DDA 6 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DOlib DDA 'COMMON NAME' GMML 1.0 b-D-Olivopyranose DDA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp DDA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Oli DDL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2-deoxy-Fucp DRI 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp4OMe # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/3,4,3/[ad122m-1b_1-5][ad112m-1b_1-5][ad122m-1b_1-5_4*OC]/1-2-3-1/a3-b1_b3-c1_c3-d1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2-deoxy-Fucp]{[(3+1)][b-D-2,6-deoxy-Glcp4Me]{[(3+1)][b-D-2,6-deoxy-Glcp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 DDL C1 O1 1 DDA O3 HO3 sing ? 2 2 3 DRI C1 O1 2 DDL O3 HO3 sing ? 3 2 4 DDA C1 O1 3 DRI O3 HO3 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 DDA 1 n 2 DDL 2 n 2 DRI 3 n 2 DDA 4 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 beta-D-Olivopyranose DDA 4 '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE' DXA 5 'MAGNESIUM ION' MG #