data_1CP8 # _entry.id 1CP8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1CP8 pdb_00001cp8 10.2210/pdb1cp8/pdb RCSB RCSB001176 ? ? WWPDB D_1000001176 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-07-01 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2023-12-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_entity_branch 7 4 'Structure model' pdbx_entity_branch_descriptor 8 4 'Structure model' pdbx_entity_branch_link 9 4 'Structure model' pdbx_entity_branch_list 10 4 'Structure model' pdbx_entity_nonpoly 11 4 'Structure model' pdbx_nonpoly_scheme 12 4 'Structure model' pdbx_struct_assembly 13 4 'Structure model' pdbx_struct_conn_angle 14 4 'Structure model' pdbx_struct_oper_list 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen 19 5 'Structure model' chem_comp 20 5 'Structure model' chem_comp_atom 21 5 'Structure model' chem_comp_bond 22 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.value' 26 4 'Structure model' '_struct_conn.pdbx_dist_value' 27 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 28 4 'Structure model' '_struct_conn.pdbx_value_order' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 5 'Structure model' '_chem_comp.pdbx_synonyms' 42 5 'Structure model' '_database_2.pdbx_DOI' 43 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CP8 _pdbx_database_status.recvd_initial_deposition_date 1999-06-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Katahira, R.' 1 'Katahira, M.' 2 'Yamashita, Y.' 3 'Ogawa, H.' 4 'Kyogoku, Y.' 5 'Yoshida, M.' 6 # _citation.id primary _citation.title 'Solution structure of the novel antitumor drug UCH9 complexed with d(TTGGCCAA)2 as determined by NMR.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 26 _citation.page_first 744 _citation.page_last 755 _citation.year 1998 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9443966 _citation.pdbx_database_id_DOI 10.1093/nar/26.3.744 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Katahira, R.' 1 ? primary 'Katahira, M.' 2 ? primary 'Yamashita, Y.' 3 ? primary 'Ogawa, H.' 4 ? primary 'Kyogoku, Y.' 5 ? primary 'Yoshida, M.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*TP*TP*GP*GP*CP*CP*AP*A)-3') ; 2426.617 2 ? ? ? ;TWO MOLECULES OF THE DRUG UCH9 (DDA-DXA-DDA-DDL-DRI-DDA) BOUND IN THE MINOR GROOVE THE MODEL CONTAINS TWO MOLECULES OF UCH9 AND ONE MG CATION WHICH IS COORDINATED TO TWO UCH9 MOLECULES. IN THIS ENTRY UCH9 IS PRESENTED AS HET GROUP, DDA-DXA-DDA-DDL-DRI-DDA. THESE GROUPS ARE NUMBERED 1-6 FOR ONE UCH9 AND 7-12 FOR THE OTHER UCH9. ; 2 branched syn ;beta-D-Olivopyranose-(1-3)-2,6-dideoxy-4-O-methyl-beta-D-glucopyranose-(1-3)-2,6-dideoxy-beta-D-galactopyranose-(1-3)-beta-D-Olivopyranose ; 552.609 2 ? ? ? ;UCH9 WAS ISOLATED FROM STREPTOMYCES SP. THE DETAILS ARE SHOWN IN THE FOLLOWING PAPER: J. ANTIBIOTICS 51, 261-266, ; 3 non-polymer syn beta-D-Olivopyranose 148.157 2 ? ? ? ;UCH9 WAS ISOLATED FROM STREPTOMYCES SP. THE DETAILS ARE SHOWN IN THE FOLLOWING PAPER: J. ANTIBIOTICS 51, 261-266, ; 4 non-polymer syn '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE' 430.491 2 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DT)(DG)(DG)(DC)(DC)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TTGGCCAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 beta-D-Olivopyranose DDA 4 '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE' DXA 5 'MAGNESIUM ION' MG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DT n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DA n 1 8 DA n # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/3,4,3/[ad122m-1b_1-5][ad112m-1b_1-5][ad122m-1b_1-5_4*OC]/1-2-3-1/a3-b1_b3-c1_c3-d1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2-deoxy-Fucp]{[(3+1)][b-D-2,6-deoxy-Glcp4Me]{[(3+1)][b-D-2,6-deoxy-Glcp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 DDL C1 O1 1 DDA O3 HO3 sing ? 2 2 3 DRI C1 O1 2 DDL O3 HO3 sing ? 3 2 4 DDA C1 O1 3 DRI O3 HO3 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DDA 'D-saccharide, beta linking' . beta-D-Olivopyranose ;beta-D-Olivose; 2,6-dideoxy-beta-D-arabino-hexopyranose; 2,6-dideoxy-beta-D-glucopyranose; 2,6-dideoxy-beta-D-mannopyranose; 2-deoxy-beta-D-quinovopyranose; 2-deoxy-beta-D-rhamnoopyranose; D-Olivose; Olivose; 2,6-DIDEOXY-BETA-D-GLUCOSE; 2,6-DIDEOXY-BETA-D-MANNOSE ; 'C6 H12 O4' 148.157 DDL 'D-saccharide, beta linking' . 2,6-dideoxy-beta-D-galactopyranose ;2,6-DIDEOXY-BETA-D-GALACTOSE; 2,6-DIDEOXY-BETA-D-TALOSE; 2,6-dideoxy-beta-D-lyxo-hexopyranose; 2-deoxy-beta-D-fucopyranose; 2,6-dideoxy-D-galactose; 2,6-dideoxy-galactose ; 'C6 H12 O4' 148.157 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DRI 'D-saccharide, beta linking' . 2,6-dideoxy-4-O-methyl-beta-D-glucopyranose ;4-O-METHYL-2,6-DIDEOXY-BETA-D-GLUCOSE; 4-O-METHYL-2,6-DIDEOXY-BETA-D-MANNOSE; 2,6-dideoxy-4-O-methyl-beta-D-glucose; 2,6-dideoxy-4-O-methyl-D-glucose; 2,6-dideoxy-4-O-methyl-glucose ; 'C7 H14 O4' 162.184 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 DXA non-polymer . '1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE' ? 'C24 H30 O7' 430.491 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier DDA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DOlib DDA 'COMMON NAME' GMML 1.0 b-D-Olivopyranose DDA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp DDA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Oli DDL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2-deoxy-Fucp DRI 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-2,6-deoxy-Glcp4OMe # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DA 8 8 8 DA A A . n B 1 1 DT 1 1 1 DT T B . n B 1 2 DT 2 2 2 DT T B . n B 1 3 DG 3 3 3 DG G B . n B 1 4 DG 4 4 4 DG G B . n B 1 5 DC 5 5 5 DC C B . n B 1 6 DC 6 6 6 DC C B . n B 1 7 DA 7 7 7 DA A B . n B 1 8 DA 8 8 8 DA A B . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 DDA 1 C DDA 1 N DDA 9 n C 2 DDL 2 C DDL 2 N DDL 10 n C 2 DRI 3 C DRI 3 N DRI 11 n C 2 DDA 4 C DDA 4 N DDA 12 n D 2 DDA 1 D DDA 1 M DDA 3 n D 2 DDL 2 D DDL 2 M DDL 4 n D 2 DRI 3 D DRI 3 M DRI 5 n D 2 DDA 4 D DDA 4 M DDA 6 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 DDA 1 13 7 DDA DDA A . F 4 DXA 1 14 8 DXA DXA A . G 3 DDA 1 13 1 DDA DDA B . H 5 MG 1 14 13 MG MG B . I 4 DXA 1 15 2 DXA DXA B . # _cell.entry_id 1CP8 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CP8 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 1CP8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 1CP8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1CP8 _struct.title ;NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9 ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CP8 _struct_keywords.pdbx_keywords DNA _struct_keywords.text DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1CP8 _struct_ref.pdbx_db_accession 1CP8 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1CP8 A 1 ? 8 ? 1CP8 1 ? 8 ? 1 8 2 1 1CP8 B 1 ? 8 ? 1CP8 1 ? 8 ? 1 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? E DDA . O1 ? ? ? 1_555 F DXA . C6 ? ? A DDA 13 A DXA 14 1_555 ? ? ? ? ? ? ? 1.406 ? ? covale2 covale one ? F DXA . C2 ? ? ? 1_555 C DDA . O1 ? ? A DXA 14 C DDA 1 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale3 covale one ? G DDA . O1 ? ? ? 1_555 I DXA . C6 ? ? B DDA 13 B DXA 15 1_555 ? ? ? ? ? ? ? 1.406 ? ? covale4 covale one ? I DXA . C2 ? ? ? 1_555 D DDA . O1 ? ? B DXA 15 D DDA 1 1_555 ? ? ? ? ? ? ? 1.421 ? ? covale5 covale both ? C DDA . O3 ? ? ? 1_555 C DDL . C1 ? ? C DDA 1 C DDL 2 1_555 ? ? ? ? ? ? ? 1.417 sing ? covale6 covale both ? C DDL . O3 ? ? ? 1_555 C DRI . C1 ? ? C DDL 2 C DRI 3 1_555 ? ? ? ? ? ? ? 1.427 sing ? covale7 covale both ? C DRI . O3 ? ? ? 1_555 C DDA . C1 ? ? C DRI 3 C DDA 4 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale8 covale both ? D DDA . O3 ? ? ? 1_555 D DDL . C1 ? ? D DDA 1 D DDL 2 1_555 ? ? ? ? ? ? ? 1.418 sing ? covale9 covale both ? D DDL . O3 ? ? ? 1_555 D DRI . C1 ? ? D DDL 2 D DRI 3 1_555 ? ? ? ? ? ? ? 1.427 sing ? covale10 covale both ? D DRI . O3 ? ? ? 1_555 D DDA . C1 ? ? D DRI 3 D DDA 4 1_555 ? ? ? ? ? ? ? 1.419 ? ? metalc1 metalc ? ? F DXA . O1 ? ? ? 1_555 H MG . MG ? ? A DXA 14 B MG 14 1_555 ? ? ? ? ? ? ? 2.749 ? ? metalc2 metalc ? ? F DXA . O9 ? ? ? 1_555 H MG . MG ? ? A DXA 14 B MG 14 1_555 ? ? ? ? ? ? ? 2.357 ? ? metalc3 metalc ? ? H MG . MG ? ? ? 1_555 I DXA . O9 ? ? B MG 14 B DXA 15 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc4 metalc ? ? H MG . MG ? ? ? 1_555 I DXA . O1 ? ? B MG 14 B DXA 15 1_555 ? ? ? ? ? ? ? 2.538 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 8 N1 ? ? A DT 1 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 8 N6 ? ? A DT 1 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DT 2 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 2 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 2 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 4 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 4 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 4 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 5 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 5 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 5 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 2 N3 ? ? A DA 7 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 2 O4 ? ? A DA 7 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 1 N3 ? ? A DA 8 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 1 O4 ? ? A DA 8 B DT 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O9 ? F DXA . ? A DXA 14 ? 1_555 59.7 ? 2 O1 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O9 ? I DXA . ? B DXA 15 ? 1_555 89.4 ? 3 O9 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O9 ? I DXA . ? B DXA 15 ? 1_555 146.4 ? 4 O1 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O1 ? I DXA . ? B DXA 15 ? 1_555 75.2 ? 5 O9 ? F DXA . ? A DXA 14 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O1 ? I DXA . ? B DXA 15 ? 1_555 94.2 ? 6 O9 ? I DXA . ? B DXA 15 ? 1_555 MG ? H MG . ? B MG 14 ? 1_555 O1 ? I DXA . ? B DXA 15 ? 1_555 63.1 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.56 108.30 2.26 0.30 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.46 108.30 4.16 0.30 N 3 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 117.88 113.10 4.78 0.50 N 4 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 103.49 106.40 -2.91 0.40 N 5 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 113.33 108.30 5.03 0.30 N 6 1 N7 A DG 4 ? ? C8 A DG 4 ? ? N9 A DG 4 ? ? 117.66 113.10 4.56 0.50 N 7 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 103.79 106.40 -2.61 0.40 N 8 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.75 108.30 3.45 0.30 N 9 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.16 108.30 1.86 0.30 N 10 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.30 108.30 3.00 0.30 N 11 1 N7 A DA 7 ? ? C8 A DA 7 ? ? N9 A DA 7 ? ? 117.48 113.80 3.68 0.50 N 12 1 "O4'" A DA 8 ? ? "C1'" A DA 8 ? ? N9 A DA 8 ? ? 111.69 108.30 3.39 0.30 N 13 1 N7 A DA 8 ? ? C8 A DA 8 ? ? N9 A DA 8 ? ? 117.78 113.80 3.98 0.50 N 14 1 "O4'" B DT 1 ? ? "C1'" B DT 1 ? ? N1 B DT 1 ? ? 110.62 108.30 2.32 0.30 N 15 1 "O4'" B DG 3 ? ? "C1'" B DG 3 ? ? N9 B DG 3 ? ? 112.47 108.30 4.17 0.30 N 16 1 N7 B DG 3 ? ? C8 B DG 3 ? ? N9 B DG 3 ? ? 117.87 113.10 4.77 0.50 N 17 1 C8 B DG 3 ? ? N9 B DG 3 ? ? C4 B DG 3 ? ? 103.56 106.40 -2.84 0.40 N 18 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 113.31 108.30 5.01 0.30 N 19 1 N7 B DG 4 ? ? C8 B DG 4 ? ? N9 B DG 4 ? ? 117.68 113.10 4.58 0.50 N 20 1 C8 B DG 4 ? ? N9 B DG 4 ? ? C4 B DG 4 ? ? 103.79 106.40 -2.61 0.40 N 21 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.58 108.30 3.28 0.30 N 22 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 110.14 108.30 1.84 0.30 N 23 1 "O4'" B DA 7 ? ? "C1'" B DA 7 ? ? N9 B DA 7 ? ? 111.36 108.30 3.06 0.30 N 24 1 N7 B DA 7 ? ? C8 B DA 7 ? ? N9 B DA 7 ? ? 117.55 113.80 3.75 0.50 N 25 1 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 111.67 108.30 3.37 0.30 N 26 1 N7 B DA 8 ? ? C8 B DA 8 ? ? N9 B DA 8 ? ? 117.81 113.80 4.01 0.50 N 27 1 C8 B DA 8 ? ? N9 B DA 8 ? ? C4 B DA 8 ? ? 103.34 105.80 -2.46 0.40 N # _pdbx_nmr_ensemble.entry_id 1CP8 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1CP8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '10% WATER/90% D2O, 100% D2O' _pdbx_nmr_sample_details.solvent_system ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.9 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 DQF-COSY 1 3 1 TOCSY 1 4 1 E.COSY 1 # _pdbx_nmr_details.entry_id 1CP8 _pdbx_nmr_details.text 'BEST STRUCTURE' # _pdbx_nmr_refine.entry_id 1CP8 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE. THE ABSOLUTE CONFIGURATION OF THE HYDROPHILIC SIDECHAIN HAS NOT BEEN DETERMINED. IN THIS MODEL, IT WAS SET TO THE SAME CONFIGURATION AS THAT OF THE OTHER AUREOLIC ACID GROUP COMPOUNDS, SUCH AS CHROMOMYCIN A3. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement X-PLOR 3.1 BRUNGER 1 'structure solution' X-PLOR ? ? 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DDA C1 C N R 71 DDA C2 C N N 72 DDA C3 C N R 73 DDA C4 C N S 74 DDA C5 C N R 75 DDA C6 C N N 76 DDA O5 O N N 77 DDA O1 O N N 78 DDA O3 O N N 79 DDA O4 O N N 80 DDA H1 H N N 81 DDA H21 H N N 82 DDA H22 H N N 83 DDA H3 H N N 84 DDA H4 H N N 85 DDA H5 H N N 86 DDA H61 H N N 87 DDA H62 H N N 88 DDA H63 H N N 89 DDA HO1 H N N 90 DDA HO3 H N N 91 DDA HO4 H N N 92 DDL C1 C N R 93 DDL C2 C N N 94 DDL C3 C N R 95 DDL C4 C N R 96 DDL C5 C N R 97 DDL C6 C N N 98 DDL O1 O N N 99 DDL O5 O N N 100 DDL O3 O N N 101 DDL O4 O N N 102 DDL H1 H N N 103 DDL H2 H N N 104 DDL H22 H N N 105 DDL H3 H N N 106 DDL H4 H N N 107 DDL H5 H N N 108 DDL H61 H N N 109 DDL H62 H N N 110 DDL H63 H N N 111 DDL HO1 H N N 112 DDL HO3 H N N 113 DDL HO4 H N N 114 DG OP3 O N N 115 DG P P N N 116 DG OP1 O N N 117 DG OP2 O N N 118 DG "O5'" O N N 119 DG "C5'" C N N 120 DG "C4'" C N R 121 DG "O4'" O N N 122 DG "C3'" C N S 123 DG "O3'" O N N 124 DG "C2'" C N N 125 DG "C1'" C N R 126 DG N9 N Y N 127 DG C8 C Y N 128 DG N7 N Y N 129 DG C5 C Y N 130 DG C6 C N N 131 DG O6 O N N 132 DG N1 N N N 133 DG C2 C N N 134 DG N2 N N N 135 DG N3 N N N 136 DG C4 C Y N 137 DG HOP3 H N N 138 DG HOP2 H N N 139 DG "H5'" H N N 140 DG "H5''" H N N 141 DG "H4'" H N N 142 DG "H3'" H N N 143 DG "HO3'" H N N 144 DG "H2'" H N N 145 DG "H2''" H N N 146 DG "H1'" H N N 147 DG H8 H N N 148 DG H1 H N N 149 DG H21 H N N 150 DG H22 H N N 151 DRI O1 O N N 152 DRI C1 C N R 153 DRI C5 C N R 154 DRI C2 C N N 155 DRI C3 C N R 156 DRI O3 O N N 157 DRI C4 C N S 158 DRI O4 O N N 159 DRI CME C N N 160 DRI O5 O N N 161 DRI C6 C N N 162 DRI HO1 H N N 163 DRI H1 H N N 164 DRI H5 H N N 165 DRI H2 H N N 166 DRI H22 H N N 167 DRI H3 H N N 168 DRI HO3 H N N 169 DRI H4 H N N 170 DRI H41 H N N 171 DRI H42 H N N 172 DRI H43 H N N 173 DRI H61 H N N 174 DRI H62 H N N 175 DRI H63 H N N 176 DT OP3 O N N 177 DT P P N N 178 DT OP1 O N N 179 DT OP2 O N N 180 DT "O5'" O N N 181 DT "C5'" C N N 182 DT "C4'" C N R 183 DT "O4'" O N N 184 DT "C3'" C N S 185 DT "O3'" O N N 186 DT "C2'" C N N 187 DT "C1'" C N R 188 DT N1 N N N 189 DT C2 C N N 190 DT O2 O N N 191 DT N3 N N N 192 DT C4 C N N 193 DT O4 O N N 194 DT C5 C N N 195 DT C7 C N N 196 DT C6 C N N 197 DT HOP3 H N N 198 DT HOP2 H N N 199 DT "H5'" H N N 200 DT "H5''" H N N 201 DT "H4'" H N N 202 DT "H3'" H N N 203 DT "HO3'" H N N 204 DT "H2'" H N N 205 DT "H2''" H N N 206 DT "H1'" H N N 207 DT H3 H N N 208 DT H71 H N N 209 DT H72 H N N 210 DT H73 H N N 211 DT H6 H N N 212 DXA C1 C N N 213 DXA O1 O N N 214 DXA C9A C Y N 215 DXA C2 C N N 216 DXA C3 C N R 217 DXA C4 C N N 218 DXA C4A C Y N 219 DXA C10 C Y N 220 DXA C5A C Y N 221 DXA C5 C Y N 222 DXA C6 C Y N 223 DXA C7 C Y N 224 DXA C8 C Y N 225 DXA O8 O N N 226 DXA C8A C Y N 227 DXA C9 C Y N 228 DXA O9 O N N 229 DXA CME C N N 230 DXA "C6'" C N R 231 DXA "C1'" C N S 232 DXA "O1'" O N N 233 DXA "C2'" C N N 234 DXA "O2'" O N N 235 DXA "C3'" C N S 236 DXA "O3'" O N N 237 DXA "C4'" C N R 238 DXA "O4'" O N N 239 DXA "C5'" C N N 240 DXA "C7'" C N N 241 DXA "C8'" C N N 242 DXA "C9'" C N N 243 DXA H21 H N N 244 DXA H22 H N N 245 DXA H3 H N N 246 DXA H4A H N N 247 DXA H4E H N N 248 DXA H10 H N N 249 DXA H5 H N N 250 DXA H6 H N N 251 DXA HO8 H N N 252 DXA HO9 H N N 253 DXA H11 H N N 254 DXA H12 H N N 255 DXA H13 H N N 256 DXA "H6'" H N N 257 DXA "H1'" H N N 258 DXA "H3'" H N N 259 DXA HO3 H N N 260 DXA "H4'" H N N 261 DXA HO4 H N N 262 DXA H51 H N N 263 DXA H52 H N N 264 DXA H53 H N N 265 DXA H71 H N N 266 DXA H72 H N N 267 DXA H73 H N N 268 DXA H81 H N N 269 DXA H82 H N N 270 DXA H91 H N N 271 DXA H92 H N N 272 DXA H93 H N N 273 MG MG MG N N 274 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DDA C1 C2 sing N N 74 DDA C1 O5 sing N N 75 DDA C1 O1 sing N N 76 DDA C1 H1 sing N N 77 DDA C2 C3 sing N N 78 DDA C2 H21 sing N N 79 DDA C2 H22 sing N N 80 DDA C3 C4 sing N N 81 DDA C3 O3 sing N N 82 DDA C3 H3 sing N N 83 DDA C4 C5 sing N N 84 DDA C4 O4 sing N N 85 DDA C4 H4 sing N N 86 DDA C5 C6 sing N N 87 DDA C5 O5 sing N N 88 DDA C5 H5 sing N N 89 DDA C6 H61 sing N N 90 DDA C6 H62 sing N N 91 DDA C6 H63 sing N N 92 DDA O1 HO1 sing N N 93 DDA O3 HO3 sing N N 94 DDA O4 HO4 sing N N 95 DDL C1 C2 sing N N 96 DDL C1 O1 sing N N 97 DDL C1 O5 sing N N 98 DDL C1 H1 sing N N 99 DDL C2 C3 sing N N 100 DDL C2 H2 sing N N 101 DDL C2 H22 sing N N 102 DDL C3 C4 sing N N 103 DDL C3 O3 sing N N 104 DDL C3 H3 sing N N 105 DDL C4 C5 sing N N 106 DDL C4 O4 sing N N 107 DDL C4 H4 sing N N 108 DDL C5 C6 sing N N 109 DDL C5 O5 sing N N 110 DDL C5 H5 sing N N 111 DDL C6 H61 sing N N 112 DDL C6 H62 sing N N 113 DDL C6 H63 sing N N 114 DDL O1 HO1 sing N N 115 DDL O3 HO3 sing N N 116 DDL O4 HO4 sing N N 117 DG OP3 P sing N N 118 DG OP3 HOP3 sing N N 119 DG P OP1 doub N N 120 DG P OP2 sing N N 121 DG P "O5'" sing N N 122 DG OP2 HOP2 sing N N 123 DG "O5'" "C5'" sing N N 124 DG "C5'" "C4'" sing N N 125 DG "C5'" "H5'" sing N N 126 DG "C5'" "H5''" sing N N 127 DG "C4'" "O4'" sing N N 128 DG "C4'" "C3'" sing N N 129 DG "C4'" "H4'" sing N N 130 DG "O4'" "C1'" sing N N 131 DG "C3'" "O3'" sing N N 132 DG "C3'" "C2'" sing N N 133 DG "C3'" "H3'" sing N N 134 DG "O3'" "HO3'" sing N N 135 DG "C2'" "C1'" sing N N 136 DG "C2'" "H2'" sing N N 137 DG "C2'" "H2''" sing N N 138 DG "C1'" N9 sing N N 139 DG "C1'" "H1'" sing N N 140 DG N9 C8 sing Y N 141 DG N9 C4 sing Y N 142 DG C8 N7 doub Y N 143 DG C8 H8 sing N N 144 DG N7 C5 sing Y N 145 DG C5 C6 sing N N 146 DG C5 C4 doub Y N 147 DG C6 O6 doub N N 148 DG C6 N1 sing N N 149 DG N1 C2 sing N N 150 DG N1 H1 sing N N 151 DG C2 N2 sing N N 152 DG C2 N3 doub N N 153 DG N2 H21 sing N N 154 DG N2 H22 sing N N 155 DG N3 C4 sing N N 156 DRI O1 C1 sing N N 157 DRI O1 HO1 sing N N 158 DRI C1 C2 sing N N 159 DRI C1 O5 sing N N 160 DRI C1 H1 sing N N 161 DRI C5 C4 sing N N 162 DRI C5 O5 sing N N 163 DRI C5 C6 sing N N 164 DRI C5 H5 sing N N 165 DRI C2 C3 sing N N 166 DRI C2 H2 sing N N 167 DRI C2 H22 sing N N 168 DRI C3 O3 sing N N 169 DRI C3 C4 sing N N 170 DRI C3 H3 sing N N 171 DRI O3 HO3 sing N N 172 DRI C4 O4 sing N N 173 DRI C4 H4 sing N N 174 DRI O4 CME sing N N 175 DRI CME H41 sing N N 176 DRI CME H42 sing N N 177 DRI CME H43 sing N N 178 DRI C6 H61 sing N N 179 DRI C6 H62 sing N N 180 DRI C6 H63 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 DXA C1 O1 doub N N 219 DXA C1 C9A sing N N 220 DXA C1 C2 sing N N 221 DXA C9A C4A doub Y N 222 DXA C9A C9 sing Y N 223 DXA C2 C3 sing N N 224 DXA C2 H21 sing N N 225 DXA C2 H22 sing N N 226 DXA C3 C4 sing N N 227 DXA C3 "C1'" sing N N 228 DXA C3 H3 sing N N 229 DXA C4 C4A sing N N 230 DXA C4 H4A sing N N 231 DXA C4 H4E sing N N 232 DXA C4A C10 sing Y N 233 DXA C10 C5A doub Y N 234 DXA C10 H10 sing N N 235 DXA C5A C5 sing Y N 236 DXA C5A C8A sing Y N 237 DXA C5 C6 doub Y N 238 DXA C5 H5 sing N N 239 DXA C6 C7 sing Y N 240 DXA C6 H6 sing N N 241 DXA C7 C8 doub Y N 242 DXA C7 "C6'" sing N N 243 DXA C8 O8 sing N N 244 DXA C8 C8A sing Y N 245 DXA O8 HO8 sing N N 246 DXA C8A C9 doub Y N 247 DXA C9 O9 sing N N 248 DXA O9 HO9 sing N N 249 DXA CME "O1'" sing N N 250 DXA CME H11 sing N N 251 DXA CME H12 sing N N 252 DXA CME H13 sing N N 253 DXA "C6'" "C7'" sing N N 254 DXA "C6'" "C8'" sing N N 255 DXA "C6'" "H6'" sing N N 256 DXA "C1'" "O1'" sing N N 257 DXA "C1'" "C2'" sing N N 258 DXA "C1'" "H1'" sing N N 259 DXA "C2'" "O2'" doub N N 260 DXA "C2'" "C3'" sing N N 261 DXA "C3'" "O3'" sing N N 262 DXA "C3'" "C4'" sing N N 263 DXA "C3'" "H3'" sing N N 264 DXA "O3'" HO3 sing N N 265 DXA "C4'" "O4'" sing N N 266 DXA "C4'" "C5'" sing N N 267 DXA "C4'" "H4'" sing N N 268 DXA "O4'" HO4 sing N N 269 DXA "C5'" H51 sing N N 270 DXA "C5'" H52 sing N N 271 DXA "C5'" H53 sing N N 272 DXA "C7'" H71 sing N N 273 DXA "C7'" H72 sing N N 274 DXA "C7'" H73 sing N N 275 DXA "C8'" "C9'" sing N N 276 DXA "C8'" H81 sing N N 277 DXA "C8'" H82 sing N N 278 DXA "C9'" H91 sing N N 279 DXA "C9'" H92 sing N N 280 DXA "C9'" H93 sing N N 281 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1CP8 'double helix' 1CP8 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 8 1_555 0.156 0.086 0.028 -0.803 0.213 -9.521 1 A_DT1:DA8_B A 1 ? B 8 ? 20 1 1 A DT 2 1_555 B DA 7 1_555 -0.034 0.176 -0.008 -0.997 -0.123 -14.325 2 A_DT2:DA7_B A 2 ? B 7 ? 20 1 1 A DG 3 1_555 B DC 6 1_555 0.646 0.150 0.028 0.424 -0.784 0.642 3 A_DG3:DC6_B A 3 ? B 6 ? 19 1 1 A DG 4 1_555 B DC 5 1_555 0.569 0.152 0.027 0.862 -1.411 0.434 4 A_DG4:DC5_B A 4 ? B 5 ? 19 1 1 A DC 5 1_555 B DG 4 1_555 -0.570 0.152 0.028 -0.911 -1.516 0.283 5 A_DC5:DG4_B A 5 ? B 4 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 -0.631 0.147 0.030 -0.465 -0.782 0.540 6 A_DC6:DG3_B A 6 ? B 3 ? 19 1 1 A DA 7 1_555 B DT 2 1_555 0.032 0.172 -0.007 0.986 -0.056 -14.391 7 A_DA7:DT2_B A 7 ? B 2 ? 20 1 1 A DA 8 1_555 B DT 1 1_555 -0.153 0.081 0.029 0.807 0.231 -9.472 8 A_DA8:DT1_B A 8 ? B 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 8 1_555 A DT 2 1_555 B DA 7 1_555 -0.826 -0.298 3.765 -0.457 -2.650 32.674 -0.002 1.372 3.787 -4.701 0.810 32.782 1 AA_DT1DT2:DA7DA8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A DT 2 1_555 B DA 7 1_555 A DG 3 1_555 B DC 6 1_555 1.612 0.438 3.753 -2.333 -8.404 33.571 2.177 -3.106 3.430 -14.253 3.957 34.654 2 AA_DT2DG3:DC6DA7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DG 3 1_555 B DC 6 1_555 A DG 4 1_555 B DC 5 1_555 0.560 -1.504 2.998 -0.759 5.180 29.864 -3.792 -1.205 2.690 9.956 1.459 30.309 3 AA_DG3DG4:DC5DC6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A DG 4 1_555 B DC 5 1_555 A DC 5 1_555 B DG 4 1_555 -0.004 -1.544 3.327 -0.028 -6.645 29.006 -1.518 0.002 3.584 -13.050 0.055 29.742 4 AA_DG4DC5:DG4DC5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A DC 5 1_555 B DG 4 1_555 A DC 6 1_555 B DG 3 1_555 -0.562 -1.509 2.999 0.769 5.252 29.970 -3.796 1.206 2.687 10.057 -1.473 30.426 5 AA_DC5DC6:DG3DG4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A DC 6 1_555 B DG 3 1_555 A DA 7 1_555 B DT 2 1_555 -1.614 0.433 3.750 2.306 -8.441 33.504 2.181 3.110 3.428 -14.341 -3.918 34.596 6 AA_DC6DA7:DT2DG3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A DA 7 1_555 B DT 2 1_555 A DA 8 1_555 B DT 1 1_555 0.829 -0.298 3.765 0.458 -2.697 32.707 0.009 -1.377 3.787 -4.778 -0.812 32.818 7 AA_DA7DA8:DT1DT2_BB A 7 ? B 2 ? A 8 ? B 1 ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 DDA 1 n 2 DDL 2 n 2 DRI 3 n 2 DDA 4 n # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 1CP8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P # loop_