HEADER HYDROLASE 12-JUN-99 1CP9 TITLE CRYSTAL STRUCTURE OF PENICILLIN G ACYLASE FROM THE BRO1 MUTANT STRAIN TITLE 2 OF PROVIDENCIA RETTGERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN G AMIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-228; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: CHAIN A IS ALPHA-SUBUNIT; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PENICILLIN G AMIDASE; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 285-837; COMPND 11 OTHER_DETAILS: CHAIN B IS BETA-SUBUNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROVIDENCIA RETTGERI; SOURCE 3 ORGANISM_TAXID: 587; SOURCE 4 VARIANT: 31052; SOURCE 5 CELLULAR_LOCATION: PERIPLASM; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: PROVIDENCIA RETTGERI; SOURCE 8 ORGANISM_TAXID: 587; SOURCE 9 VARIANT: 31052; SOURCE 10 CELLULAR_LOCATION: PERIPLASM KEYWDS ANTIBIOTIC RESISTANCE, AMIDOHYDROLASE, NTN-HYDROLASE FOLD, N-TERMINAL KEYWDS 2 PYROGLUTAMATE, PENICILLIN BINDING PROTEIN, CALCIUM BINDING PROTEIN, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,H.E.KLEI,J.A.KELLY REVDAT 7 16-OCT-24 1CP9 1 REMARK REVDAT 6 09-AUG-23 1CP9 1 REMARK SEQRES LINK REVDAT 5 28-JUN-17 1CP9 1 REMARK DBREF REVDAT 4 24-FEB-09 1CP9 1 VERSN REVDAT 3 20-JAN-00 1CP9 1 REVDAT REVDAT 2 23-DEC-99 1CP9 1 JRNL REVDAT 1 24-JUN-99 1CP9 0 JRNL AUTH M.A.MCDONOUGH,H.E.KLEI,J.A.KELLY JRNL TITL CRYSTAL STRUCTURE OF PENICILLIN G ACYLASE FROM THE BRO1 JRNL TITL 2 MUTANT STRAIN OF PROVIDENCIA RETTGERI. JRNL REF PROTEIN SCI. V. 8 1971 1999 JRNL REFN ISSN 0961-8368 JRNL PMID 10548042 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0100 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.7 REMARK 3 NUMBER OF REFLECTIONS : 34334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 813 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3137 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE : 0.1840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 70 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 776 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.650 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.060 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.390 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.710 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 PRESENCE OF ANOMALOUS SIGNAL, REFINEMENT CARRIED OUT WITH BIJVOET REMARK 3 PAIRS REMARK 3 UNMERGED. REMARK 4 REMARK 4 1CP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000001177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-94 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : 0.3MM COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39576 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 16.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: MODIFIED PDB ENTRY 1PNK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 30-45% REMARK 280 SATURATED AMMONIUM SULFATE, 15% GLYCEROL, 50 MM K2HPO4, 0.02% W/ REMARK 280 V SODIUM AZIDE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.72967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.45933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 100.09450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 166.82417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.36483 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.72967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 133.45933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 166.82417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 100.09450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.36483 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 29010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -287.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.36483 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 785 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 557 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 198 REMARK 465 GLN A 199 REMARK 465 LYS A 200 REMARK 465 THR A 201 REMARK 465 LYS A 202 REMARK 465 ASN A 203 REMARK 465 ILE A 204 REMARK 465 SER A 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 5 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LEU B 18 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 37 39.46 -140.41 REMARK 500 ASP A 121 61.62 61.20 REMARK 500 ASN A 148 138.67 -173.99 REMARK 500 ASN A 177 57.18 -145.08 REMARK 500 ASN B 43 75.85 -161.29 REMARK 500 ASN B 202 6.15 82.28 REMARK 500 TRP B 240 48.26 -141.96 REMARK 500 LEU B 253 128.64 -39.95 REMARK 500 THR B 358 -92.50 -109.09 REMARK 500 GLU B 377 92.65 -53.66 REMARK 500 GLU B 402 -118.55 49.13 REMARK 500 PHE B 459 -8.39 -58.29 REMARK 500 GLN B 518 30.59 -154.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR B 196 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1041 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B1066 DISTANCE = 6.76 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 554 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 150 OE2 REMARK 620 2 ASP B 73 OD1 156.9 REMARK 620 3 ASP B 73 OD2 149.2 52.9 REMARK 620 4 VAL B 75 O 78.4 78.7 131.0 REMARK 620 5 ASP B 76 OD1 88.4 89.6 104.4 79.3 REMARK 620 6 PRO B 205 O 71.1 131.9 80.7 148.1 90.5 REMARK 620 7 ASP B 252 OD1 85.9 90.6 86.9 86.9 165.9 99.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AS REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: SER B 1 IS THE CATALYTIC RESIDUE GLN B 23, ALA B REMARK 800 69 AND ASN B 241 FORM AN OXYANION HOLE REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 554 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 555 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 556 DBREF 1CP9 A 1 205 UNP Q7WZI9 Q7WZI9_PRORE 24 228 DBREF 1CP9 B 1 553 UNP Q7WZI9 Q7WZI9_PRORE 285 837 SEQADV 1CP9 LEU A 140 UNP Q7WZI9 MET 163 ENGINEERED MUTATION SEQRES 1 A 205 PCA SER THR GLN ILE LYS ILE GLU ARG ASP ASN TYR GLY SEQRES 2 A 205 VAL PRO HIS ILE TYR ALA ASN ASP THR TYR SER LEU PHE SEQRES 3 A 205 TYR GLY TYR GLY TYR ALA VAL ALA GLN ASP ARG LEU PHE SEQRES 4 A 205 GLN MET GLU MET ALA LYS ARG SER THR GLN GLY THR VAL SEQRES 5 A 205 SER GLU VAL PHE GLY LYS ASP TYR ILE SER PHE ASP LYS SEQRES 6 A 205 GLU ILE ARG ASN ASN TYR TRP PRO ASP SER ILE HIS LYS SEQRES 7 A 205 GLN ILE ASN GLN LEU PRO SER GLN GLU GLN ASP ILE LEU SEQRES 8 A 205 ARG GLY TYR ALA ASP GLY MET ASN ALA TRP ILE LYS GLN SEQRES 9 A 205 ILE ASN THR LYS PRO ASP ASP LEU MET PRO LYS GLN PHE SEQRES 10 A 205 ILE ASP TYR ASP PHE LEU PRO SER GLN TRP THR SER PHE SEQRES 11 A 205 ASP VAL ALA MET ILE MET VAL GLY THR LEU ALA ASN ARG SEQRES 12 A 205 PHE SER ASP MET ASN SER GLU ILE ASP ASN LEU ALA LEU SEQRES 13 A 205 LEU THR ALA LEU LYS ASP LYS TYR GLY GLU GLN LEU GLY SEQRES 14 A 205 VAL GLU PHE PHE ASN GLN ILE ASN TRP LEU ASN ASN PRO SEQRES 15 A 205 ASN ALA PRO THR THR ILE SER SER GLU GLU PHE THR TYR SEQRES 16 A 205 SER ASP SER GLN LYS THR LYS ASN ILE SER SEQRES 1 B 553 SER ASN VAL TRP LEU VAL GLY LYS THR LYS ALA SER GLY SEQRES 2 B 553 ALA LYS ALA ILE LEU LEU ASN GLY PRO GLN PHE GLY TRP SEQRES 3 B 553 PHE ASN PRO ALA TYR THR TYR GLY ILE GLY LEU HIS GLY SEQRES 4 B 553 ALA GLY PHE ASN ILE VAL GLY ASN THR PRO PHE ALA TYR SEQRES 5 B 553 PRO ALA ILE LEU PHE GLY HIS ASN GLY HIS VAL SER TRP SEQRES 6 B 553 GLY SER THR ALA GLY PHE GLY ASP GLY VAL ASP ILE PHE SEQRES 7 B 553 ALA GLU GLN VAL SER PRO GLU ASP PRO ASN SER TYR LEU SEQRES 8 B 553 HIS GLN GLY GLN TRP LYS LYS MET LEU SER ARG GLN GLU SEQRES 9 B 553 THR LEU ASN VAL LYS GLY GLU GLN PRO ILE THR PHE GLU SEQRES 10 B 553 ILE TYR ARG THR VAL HIS GLY ASN VAL VAL LYS ARG ASP SEQRES 11 B 553 LYS THR THR HIS THR ALA TYR SER LYS ALA ARG ALA TRP SEQRES 12 B 553 ASP GLY LYS GLU LEU THR SER LEU MET ALA TRP VAL LYS SEQRES 13 B 553 GLN GLY GLN ALA GLN ASN TRP GLN GLN TRP LEU ASP GLN SEQRES 14 B 553 ALA GLN ASN GLN ALA LEU THR ILE ASN TRP TYR TYR ALA SEQRES 15 B 553 ASP LYS ASP GLY ASN ILE GLY TYR VAL HIS THR GLY HIS SEQRES 16 B 553 TYR PRO ASP ARG GLN ILE ASN HIS ASP PRO ARG LEU PRO SEQRES 17 B 553 VAL SER GLY THR GLY GLU TRP ASP TRP LYS GLY ILE GLN SEQRES 18 B 553 PRO PHE ALA ASN ASN PRO LYS VAL TYR ASN PRO LYS SER SEQRES 19 B 553 GLY TYR ILE ALA ASN TRP ASN ASN SER PRO ALA LYS ASN SEQRES 20 B 553 TYR PRO ALA SER ASP LEU PHE ALA PHE LEU TRP GLY SER SEQRES 21 B 553 ALA ASP ARG VAL LYS GLU ILE ASP ASN ARG ILE GLU ALA SEQRES 22 B 553 TYR ASP LYS LEU THR ALA ASP ASP MET TRP ALA ILE LEU SEQRES 23 B 553 GLN GLN THR SER ARG VAL ASP LEU ASN HIS ARG LEU PHE SEQRES 24 B 553 THR PRO PHE LEU THR GLN ALA THR GLN GLY LEU PRO SER SEQRES 25 B 553 ASN ASP ASN SER VAL LYS LEU VAL SER MET LEU GLN GLN SEQRES 26 B 553 TRP ASP GLY ILE ASN GLN LEU SER SER ASP GLY LYS HIS SEQRES 27 B 553 TYR ILE HIS PRO GLY SER ALA ILE LEU ASP ILE TRP LEU SEQRES 28 B 553 LYS GLU MET LEU LYS ALA THR LEU GLY GLN THR VAL PRO SEQRES 29 B 553 ALA PRO PHE ASP LYS TRP TYR LEU ALA SER GLY TYR GLU SEQRES 30 B 553 THR THR GLN GLU GLY PRO THR GLY SER LEU ASN ILE SER SEQRES 31 B 553 THR GLY ALA LYS LEU LEU TYR GLU SER LEU LEU GLU ASP SEQRES 32 B 553 LYS SER PRO ILE SER GLN SER ILE ASP LEU PHE SER GLY SEQRES 33 B 553 GLN PRO GLN ASN ASP VAL ILE ARG LYS THR LEU ASN THR SEQRES 34 B 553 THR TYR GLN LYS MET ILE GLU LYS TYR GLY ASP ASN PRO SEQRES 35 B 553 ALA ASN TRP GLN THR PRO ALA THR ALA LEU THR PHE ARG SEQRES 36 B 553 GLU ASN ASN PHE PHE GLY ILE PRO GLN ALA LEU PRO GLN SEQRES 37 B 553 GLU ASN PHE HIS GLN ASN GLU TYR HIS ASN ARG GLY THR SEQRES 38 B 553 GLU ASN ASP LEU ILE VAL PHE THR GLU GLU GLY VAL SER SEQRES 39 B 553 ALA TRP ASP VAL VAL ALA PRO GLY GLN SER GLY PHE ILE SEQRES 40 B 553 SER PRO GLN GLY LYS PRO SER PRO HIS TYR GLN ASP GLN SEQRES 41 B 553 LEU SER LEU TYR GLN GLN PHE GLY LYS LYS PRO LEU TRP SEQRES 42 B 553 LEU ASN SER GLU ASP VAL ALA PRO TYR ILE GLU SER THR SEQRES 43 B 553 GLU THR LEU ILE ILE GLU ARG MODRES 1CP9 PCA A 1 GLN MODIFIED RESIDUE HET PCA A 1 8 HET SO4 A 255 5 HET SO4 A 269 5 HET CA B 554 1 HET SO4 B 555 5 HET SO4 B 556 5 HETNAM PCA PYROGLUTAMIC ACID HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 1 PCA C5 H7 N O3 FORMUL 3 SO4 4(O4 S 2-) FORMUL 5 CA CA 2+ FORMUL 8 HOH *776(H2 O) HELIX 1 1 THR A 22 GLN A 49 1 28 HELIX 2 2 SER A 53 PHE A 56 1 4 HELIX 3 3 LYS A 58 ASN A 70 5 13 HELIX 4 4 PRO A 73 GLN A 82 1 10 HELIX 5 5 SER A 85 THR A 107 1 23 HELIX 6 6 PRO A 109 LEU A 112 1 4 HELIX 7 7 LYS A 115 TYR A 120 1 6 HELIX 8 8 SER A 129 THR A 139 1 11 HELIX 9 9 ALA A 141 PHE A 144 1 4 HELIX 10 10 GLU A 150 ILE A 176 1 27 HELIX 11 11 PRO B 49 ALA B 51 5 3 HELIX 12 12 GLU B 147 GLN B 159 1 13 HELIX 13 13 TRP B 163 ASN B 172 1 10 HELIX 14 14 PHE B 223 ASN B 225 5 3 HELIX 15 15 ARG B 263 GLU B 272 5 10 HELIX 16 16 ALA B 279 ARG B 291 1 13 HELIX 17 17 HIS B 296 ALA B 306 1 11 HELIX 18 18 ASN B 315 GLN B 324 1 10 HELIX 19 19 GLY B 343 ALA B 357 1 15 HELIX 20 20 LEU B 359 THR B 362 1 4 HELIX 21 21 PHE B 367 TRP B 370 5 4 HELIX 22 22 THR B 391 LEU B 400 1 10 HELIX 23 23 GLU B 402 LYS B 404 5 3 HELIX 24 24 GLN B 419 TYR B 438 1 20 HELIX 25 25 PRO B 442 ASN B 444 5 3 HELIX 26 26 LEU B 521 GLN B 525 1 5 HELIX 27 27 SER B 536 TYR B 542 1 7 SHEET 1 A 2 LYS A 6 ARG A 9 0 SHEET 2 A 2 PRO A 15 TYR A 18 -1 N TYR A 18 O LYS A 6 SHEET 1 B 6 TYR B 236 ASN B 239 0 SHEET 2 B 6 ASN B 2 VAL B 6 -1 N LEU B 5 O ILE B 237 SHEET 3 B 6 ALA B 16 GLY B 21 -1 N GLY B 21 O ASN B 2 SHEET 4 B 6 ASN B 483 PHE B 488 -1 N PHE B 488 O ALA B 16 SHEET 5 B 6 VAL B 493 VAL B 498 -1 N VAL B 498 O ASN B 483 SHEET 6 B 6 LYS B 530 LEU B 532 -1 N LEU B 532 O ALA B 495 SHEET 1 C 3 THR B 32 GLY B 39 0 SHEET 2 C 3 PHE B 42 PRO B 49 -1 N THR B 48 O TYR B 33 SHEET 3 C 3 PHE B 57 HIS B 59 -1 N HIS B 59 O VAL B 45 SHEET 1 D 4 VAL B 63 ALA B 69 0 SHEET 2 D 4 ILE B 177 ASP B 183 -1 N ALA B 182 O SER B 64 SHEET 3 D 4 ILE B 188 THR B 193 -1 N THR B 193 O ILE B 177 SHEET 4 D 4 LYS B 228 TYR B 230 -1 N VAL B 229 O TYR B 190 SHEET 1 E 5 GLN B 95 LYS B 98 0 SHEET 2 E 5 ASP B 86 HIS B 92 -1 N HIS B 92 O GLN B 95 SHEET 3 E 5 VAL B 75 SER B 83 -1 N SER B 83 O ASP B 86 SHEET 4 E 5 THR B 135 ARG B 141 -1 N ALA B 140 O ASP B 76 SHEET 5 E 5 ASN B 125 ASP B 130 -1 N ASP B 130 O THR B 135 SHEET 1 F 2 LEU B 100 LEU B 106 0 SHEET 2 F 2 ILE B 114 ARG B 120 -1 N ARG B 120 O LEU B 100 SHEET 1 G 2 LEU B 452 PHE B 454 0 SHEET 2 G 2 PHE B 471 GLN B 473 -1 N GLN B 473 O LEU B 452 LINK C PCA A 1 N SER A 2 1555 1555 1.32 LINK OE2 GLU A 150 CA CA B 554 1555 1555 2.38 LINK OD1 ASP B 73 CA CA B 554 1555 1555 2.42 LINK OD2 ASP B 73 CA CA B 554 1555 1555 2.48 LINK O VAL B 75 CA CA B 554 1555 1555 2.59 LINK OD1 ASP B 76 CA CA B 554 1555 1555 2.64 LINK O PRO B 205 CA CA B 554 1555 1555 2.56 LINK OD1 ASP B 252 CA CA B 554 1555 1555 2.41 CISPEP 1 ASN B 28 PRO B 29 0 0.51 CISPEP 2 ALA B 365 PRO B 366 0 -0.17 CISPEP 3 ALA B 500 PRO B 501 0 0.21 SITE 1 AS 4 SER B 1 GLN B 23 ALA B 69 ASN B 241 SITE 1 AC1 6 GLU A 150 ASP B 73 VAL B 75 ASP B 76 SITE 2 AC1 6 PRO B 205 ASP B 252 SITE 1 AC2 4 LYS B 98 ARG B 270 GLN B 288 HOH B 775 SITE 1 AC3 7 PCA A 1 SER A 2 THR A 3 GLN A 4 SITE 2 AC3 7 ASN A 20 HOH A 828 HOH A 830 SITE 1 AC4 5 THR A 128 PHE A 130 GLU B 491 SER B 494 SITE 2 AC4 5 HOH B 981 SITE 1 AC5 4 GLN B 200 ASN B 441 ASN B 444 HOH B1038 CRYST1 140.645 140.645 200.189 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007110 0.004105 0.000000 0.00000 SCALE2 0.000000 0.008210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004995 0.00000 HETATM 1 N PCA A 1 17.976 5.055 11.230 1.00 29.11 N HETATM 2 CA PCA A 1 17.460 5.887 12.333 1.00 24.78 C HETATM 3 CB PCA A 1 18.661 6.671 12.831 1.00 26.19 C HETATM 4 CG PCA A 1 19.911 6.058 12.239 1.00 25.49 C HETATM 5 CD PCA A 1 19.452 5.174 11.059 1.00 28.97 C HETATM 6 OE PCA A 1 20.110 4.196 10.695 1.00 30.15 O HETATM 7 C PCA A 1 16.410 6.784 11.704 1.00 22.52 C HETATM 8 O PCA A 1 16.457 7.053 10.508 1.00 22.97 O