HEADER OXIDOREDUCTASE 04-AUG-99 1CQ1 TITLE SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE FROM ACINETOBACTER TITLE 2 CALCOACETICUS IN COMPLEX WITH PQQH2 AND GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.99.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER CALCOACETICUS; SOURCE 3 ORGANISM_TAXID: 471; SOURCE 4 CELLULAR_LOCATION: PERIPLASM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-PROPELLER, SUPERBARREL, COMPLEX WITH COFACTOR AND SUBSTRATE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.OUBRIE,H.J.ROZEBOOM,B.W.DIJKSTRA REVDAT 10 30-OCT-24 1CQ1 1 HETSYN REVDAT 9 29-JUL-20 1CQ1 1 COMPND REMARK HETNAM LINK REVDAT 9 2 1 SITE REVDAT 8 14-AUG-19 1CQ1 1 REMARK REVDAT 7 24-JUL-19 1CQ1 1 REMARK REVDAT 6 04-OCT-17 1CQ1 1 REMARK REVDAT 5 21-JUL-09 1CQ1 1 HET HETATM REVDAT 4 24-FEB-09 1CQ1 1 VERSN REVDAT 3 18-APR-06 1CQ1 3 ATOM HETATM REVDAT 2 28-JUN-00 1CQ1 1 SOURCE REVDAT 1 04-FEB-00 1CQ1 0 JRNL AUTH A.OUBRIE,H.J.ROZEBOOM,K.H.KALK,A.J.OLSTHOORN,J.A.DUINE, JRNL AUTH 2 B.W.DIJKSTRA JRNL TITL STRUCTURE AND MECHANISM OF SOLUBLE QUINOPROTEIN GLUCOSE JRNL TITL 2 DEHYDROGENASE. JRNL REF EMBO J. V. 18 5187 1999 JRNL REFN ISSN 0261-4189 JRNL PMID 10508152 JRNL DOI 10.1093/EMBOJ/18.19.5187 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.OUBRIE,H.J.ROZEBOOM,K.H.KALK,J.A.DUINE,B.W.DIJKSTRA REMARK 1 TITL THE 1.7 ANGSTROM CRYSTAL STRUCTURE OF THE APO FORM OF THE REMARK 1 TITL 2 SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE FROM REMARK 1 TITL 3 ACINETOBACTER CALCOACETICUS REVEALS A NOVEL INTERNAL REMARK 1 TITL 4 SEQUENCE REPEAT REMARK 1 REF J.MOL.BIOL. V. 289 319 1999 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1999.2766 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 68659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3442 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6961 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 3.009 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CQ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0736 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92032 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.81400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.843 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, SODIUM CHLORIDE, CALCIUM REMARK 280 CHLORIDE, TRIS, GLYCINE, PH 9.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.98600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 105 REMARK 465 THR A 106 REMARK 465 ASP A 107 REMARK 465 LYS A 108 REMARK 465 GLU A 109 REMARK 465 LEU A 110 REMARK 465 TYR A 451 REMARK 465 LYS A 452 REMARK 465 ALA A 453 REMARK 465 LYS A 454 REMARK 465 SER B 105 REMARK 465 THR B 106 REMARK 465 ASP B 107 REMARK 465 LYS B 108 REMARK 465 GLU B 109 REMARK 465 LEU B 110 REMARK 465 ALA B 453 REMARK 465 LYS B 454 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 274 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 15 2.00 -64.64 REMARK 500 HIS A 30 -60.77 -123.30 REMARK 500 LEU A 80 -77.45 -119.24 REMARK 500 ASP A 87 61.82 -110.11 REMARK 500 PRO A 139 154.68 -49.20 REMARK 500 SER A 146 -99.40 62.92 REMARK 500 LEU A 169 -128.11 45.99 REMARK 500 ASN A 216 36.12 39.99 REMARK 500 SER A 220 -165.77 -122.01 REMARK 500 ARG A 228 -83.21 -94.92 REMARK 500 PRO A 248 -112.81 -75.04 REMARK 500 THR A 313 58.13 -102.18 REMARK 500 ASN A 334 76.71 -110.14 REMARK 500 ALA A 350 71.78 51.02 REMARK 500 ASP A 395 -147.31 57.45 REMARK 500 HIS B 30 -54.93 -123.37 REMARK 500 LEU B 80 -79.02 -120.54 REMARK 500 PHE B 82 118.03 -162.05 REMARK 500 ASP B 87 57.74 -112.10 REMARK 500 SER B 146 -102.64 65.19 REMARK 500 LEU B 169 -122.27 45.18 REMARK 500 SER B 220 -160.02 -124.97 REMARK 500 ARG B 228 -81.67 -96.47 REMARK 500 PRO B 248 -111.51 -71.01 REMARK 500 SER B 353 -167.75 -160.76 REMARK 500 ALA B 354 119.87 -164.29 REMARK 500 ASP B 395 -147.98 57.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 247 O REMARK 620 2 PRO A 248 O 71.6 REMARK 620 3 PQQ A 504 O5 83.5 144.1 REMARK 620 4 PQQ A 504 N6 144.5 143.8 65.8 REMARK 620 5 PQQ A 504 O7A 143.9 81.6 130.4 64.8 REMARK 620 6 HOH A 529 O 82.2 116.3 84.2 77.7 88.7 REMARK 620 7 HOH A 543 O 108.8 80.5 83.8 86.0 89.6 162.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 253 OE1 REMARK 620 2 GLU A 253 OE2 54.6 REMARK 620 3 TYR A 263 O 146.6 158.5 REMARK 620 4 HOH A 505 O 75.6 94.7 90.5 REMARK 620 5 HOH A 518 O 108.4 80.2 91.0 169.2 REMARK 620 6 HOH A 526 O 81.2 120.5 76.2 112.1 78.6 REMARK 620 7 HOH A 534 O 134.0 83.0 75.9 92.9 77.0 142.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 269 O REMARK 620 2 TYR A 271 O 96.5 REMARK 620 3 ASP A 273 OD1 160.3 81.1 REMARK 620 4 GLU A 309 OE1 130.8 81.5 68.5 REMARK 620 5 GLU A 309 OE2 79.9 98.4 119.8 52.3 REMARK 620 6 HOH A 520 O 80.1 86.7 80.2 147.8 159.7 REMARK 620 7 HOH A 545 O 82.3 169.6 96.5 107.2 91.6 83.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 247 O REMARK 620 2 PRO B 248 O 69.5 REMARK 620 3 PQQ B 504 O7A 140.8 82.0 REMARK 620 4 PQQ B 504 N6 146.8 143.6 65.2 REMARK 620 5 PQQ B 504 O5 85.6 142.2 131.5 66.4 REMARK 620 6 HOH B 521 O 107.2 78.4 92.2 87.3 82.6 REMARK 620 7 HOH B 550 O 82.9 115.9 86.1 78.6 87.4 165.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 253 OE1 REMARK 620 2 GLU B 253 OE2 53.7 REMARK 620 3 TYR B 263 O 147.2 158.1 REMARK 620 4 HOH B 505 O 80.9 121.1 77.8 REMARK 620 5 HOH B 506 O 76.3 93.9 88.5 111.2 REMARK 620 6 HOH B 511 O 132.0 80.8 77.3 143.3 94.6 REMARK 620 7 HOH B 547 O 106.8 77.9 95.0 82.9 165.9 73.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 269 O REMARK 620 2 TYR B 271 O 97.1 REMARK 620 3 ASP B 273 OD1 156.7 80.8 REMARK 620 4 GLU B 309 OE1 132.7 77.7 69.9 REMARK 620 5 GLU B 309 OE2 82.3 95.1 121.0 52.1 REMARK 620 6 HOH B 510 O 81.5 88.4 75.2 144.0 163.7 REMARK 620 7 HOH B 513 O 84.1 169.2 93.9 109.4 95.7 81.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QBI RELATED DB: PDB REMARK 900 1QBI CONTAINS THE SAME PROTEIN IN THE APO-FORM, WITHOUT PQQ REMARK 900 RELATED ID: 1C9U RELATED DB: PDB REMARK 900 1C9U CONTAINS THE SAME PROTEIN COMPLEXED WITH PQQ REMARK 900 RELATED ID: 1CRU RELATED DB: PDB REMARK 900 SOLUBLE QUINOPROTEIN GLUCOSE DEHYDROGENASE FROM ACINETOBACTER REMARK 900 CALCOACETICUS IN COMPLEX WITH PQQ AND METHYLHYDRAZINE DBREF 1CQ1 A 1 454 UNP P13650 DHGB_ACICA 25 478 DBREF 1CQ1 B 1 454 UNP P13650 DHGB_ACICA 25 478 SEQRES 1 A 454 ASP VAL PRO LEU THR PRO SER GLN PHE ALA LYS ALA LYS SEQRES 2 A 454 SER GLU ASN PHE ASP LYS LYS VAL ILE LEU SER ASN LEU SEQRES 3 A 454 ASN LYS PRO HIS ALA LEU LEU TRP GLY PRO ASP ASN GLN SEQRES 4 A 454 ILE TRP LEU THR GLU ARG ALA THR GLY LYS ILE LEU ARG SEQRES 5 A 454 VAL ASN PRO GLU SER GLY SER VAL LYS THR VAL PHE GLN SEQRES 6 A 454 VAL PRO GLU ILE VAL ASN ASP ALA ASP GLY GLN ASN GLY SEQRES 7 A 454 LEU LEU GLY PHE ALA PHE HIS PRO ASP PHE LYS ASN ASN SEQRES 8 A 454 PRO TYR ILE TYR ILE SER GLY THR PHE LYS ASN PRO LYS SEQRES 9 A 454 SER THR ASP LYS GLU LEU PRO ASN GLN THR ILE ILE ARG SEQRES 10 A 454 ARG TYR THR TYR ASN LYS SER THR ASP THR LEU GLU LYS SEQRES 11 A 454 PRO VAL ASP LEU LEU ALA GLY LEU PRO SER SER LYS ASP SEQRES 12 A 454 HIS GLN SER GLY ARG LEU VAL ILE GLY PRO ASP GLN LYS SEQRES 13 A 454 ILE TYR TYR THR ILE GLY ASP GLN GLY ARG ASN GLN LEU SEQRES 14 A 454 ALA TYR LEU PHE LEU PRO ASN GLN ALA GLN HIS THR PRO SEQRES 15 A 454 THR GLN GLN GLU LEU ASN GLY LYS ASP TYR HIS THR TYR SEQRES 16 A 454 MET GLY LYS VAL LEU ARG LEU ASN LEU ASP GLY SER ILE SEQRES 17 A 454 PRO LYS ASP ASN PRO SER PHE ASN GLY VAL VAL SER HIS SEQRES 18 A 454 ILE TYR THR LEU GLY HIS ARG ASN PRO GLN GLY LEU ALA SEQRES 19 A 454 PHE THR PRO ASN GLY LYS LEU LEU GLN SER GLU GLN GLY SEQRES 20 A 454 PRO ASN SER ASP ASP GLU ILE ASN LEU ILE VAL LYS GLY SEQRES 21 A 454 GLY ASN TYR GLY TRP PRO ASN VAL ALA GLY TYR LYS ASP SEQRES 22 A 454 ASP SER GLY TYR ALA TYR ALA ASN TYR SER ALA ALA ALA SEQRES 23 A 454 ASN LYS SER ILE LYS ASP LEU ALA GLN ASN GLY VAL LYS SEQRES 24 A 454 VAL ALA ALA GLY VAL PRO VAL THR LYS GLU SER GLU TRP SEQRES 25 A 454 THR GLY LYS ASN PHE VAL PRO PRO LEU LYS THR LEU TYR SEQRES 26 A 454 THR VAL GLN ASP THR TYR ASN TYR ASN ASP PRO THR CYS SEQRES 27 A 454 GLY GLU MET THR TYR ILE CYS TRP PRO THR VAL ALA PRO SEQRES 28 A 454 SER SER ALA TYR VAL TYR LYS GLY GLY LYS LYS ALA ILE SEQRES 29 A 454 THR GLY TRP GLU ASN THR LEU LEU VAL PRO SER LEU LYS SEQRES 30 A 454 ARG GLY VAL ILE PHE ARG ILE LYS LEU ASP PRO THR TYR SEQRES 31 A 454 SER THR THR TYR ASP ASP ALA VAL PRO MET PHE LYS SER SEQRES 32 A 454 ASN ASN ARG TYR ARG ASP VAL ILE ALA SER PRO ASP GLY SEQRES 33 A 454 ASN VAL LEU TYR VAL LEU THR ASP THR ALA GLY ASN VAL SEQRES 34 A 454 GLN LYS ASP ASP GLY SER VAL THR ASN THR LEU GLU ASN SEQRES 35 A 454 PRO GLY SER LEU ILE LYS PHE THR TYR LYS ALA LYS SEQRES 1 B 454 ASP VAL PRO LEU THR PRO SER GLN PHE ALA LYS ALA LYS SEQRES 2 B 454 SER GLU ASN PHE ASP LYS LYS VAL ILE LEU SER ASN LEU SEQRES 3 B 454 ASN LYS PRO HIS ALA LEU LEU TRP GLY PRO ASP ASN GLN SEQRES 4 B 454 ILE TRP LEU THR GLU ARG ALA THR GLY LYS ILE LEU ARG SEQRES 5 B 454 VAL ASN PRO GLU SER GLY SER VAL LYS THR VAL PHE GLN SEQRES 6 B 454 VAL PRO GLU ILE VAL ASN ASP ALA ASP GLY GLN ASN GLY SEQRES 7 B 454 LEU LEU GLY PHE ALA PHE HIS PRO ASP PHE LYS ASN ASN SEQRES 8 B 454 PRO TYR ILE TYR ILE SER GLY THR PHE LYS ASN PRO LYS SEQRES 9 B 454 SER THR ASP LYS GLU LEU PRO ASN GLN THR ILE ILE ARG SEQRES 10 B 454 ARG TYR THR TYR ASN LYS SER THR ASP THR LEU GLU LYS SEQRES 11 B 454 PRO VAL ASP LEU LEU ALA GLY LEU PRO SER SER LYS ASP SEQRES 12 B 454 HIS GLN SER GLY ARG LEU VAL ILE GLY PRO ASP GLN LYS SEQRES 13 B 454 ILE TYR TYR THR ILE GLY ASP GLN GLY ARG ASN GLN LEU SEQRES 14 B 454 ALA TYR LEU PHE LEU PRO ASN GLN ALA GLN HIS THR PRO SEQRES 15 B 454 THR GLN GLN GLU LEU ASN GLY LYS ASP TYR HIS THR TYR SEQRES 16 B 454 MET GLY LYS VAL LEU ARG LEU ASN LEU ASP GLY SER ILE SEQRES 17 B 454 PRO LYS ASP ASN PRO SER PHE ASN GLY VAL VAL SER HIS SEQRES 18 B 454 ILE TYR THR LEU GLY HIS ARG ASN PRO GLN GLY LEU ALA SEQRES 19 B 454 PHE THR PRO ASN GLY LYS LEU LEU GLN SER GLU GLN GLY SEQRES 20 B 454 PRO ASN SER ASP ASP GLU ILE ASN LEU ILE VAL LYS GLY SEQRES 21 B 454 GLY ASN TYR GLY TRP PRO ASN VAL ALA GLY TYR LYS ASP SEQRES 22 B 454 ASP SER GLY TYR ALA TYR ALA ASN TYR SER ALA ALA ALA SEQRES 23 B 454 ASN LYS SER ILE LYS ASP LEU ALA GLN ASN GLY VAL LYS SEQRES 24 B 454 VAL ALA ALA GLY VAL PRO VAL THR LYS GLU SER GLU TRP SEQRES 25 B 454 THR GLY LYS ASN PHE VAL PRO PRO LEU LYS THR LEU TYR SEQRES 26 B 454 THR VAL GLN ASP THR TYR ASN TYR ASN ASP PRO THR CYS SEQRES 27 B 454 GLY GLU MET THR TYR ILE CYS TRP PRO THR VAL ALA PRO SEQRES 28 B 454 SER SER ALA TYR VAL TYR LYS GLY GLY LYS LYS ALA ILE SEQRES 29 B 454 THR GLY TRP GLU ASN THR LEU LEU VAL PRO SER LEU LYS SEQRES 30 B 454 ARG GLY VAL ILE PHE ARG ILE LYS LEU ASP PRO THR TYR SEQRES 31 B 454 SER THR THR TYR ASP ASP ALA VAL PRO MET PHE LYS SER SEQRES 32 B 454 ASN ASN ARG TYR ARG ASP VAL ILE ALA SER PRO ASP GLY SEQRES 33 B 454 ASN VAL LEU TYR VAL LEU THR ASP THR ALA GLY ASN VAL SEQRES 34 B 454 GLN LYS ASP ASP GLY SER VAL THR ASN THR LEU GLU ASN SEQRES 35 B 454 PRO GLY SER LEU ILE LYS PHE THR TYR LYS ALA LYS HET BGC A 455 12 HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET PQQ A 504 24 HET BGC B 455 12 HET CA B 501 1 HET CA B 502 1 HET CA B 503 1 HET PQQ B 504 24 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM PQQ PYRROLOQUINOLINE QUINONE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 BGC 2(C6 H12 O6) FORMUL 4 CA 6(CA 2+) FORMUL 7 PQQ 2(C14 H6 N2 O8) FORMUL 13 HOH *590(H2 O) HELIX 1 1 THR A 5 LYS A 11 1 7 HELIX 2 2 GLN A 168 LEU A 172 5 5 HELIX 3 3 THR A 183 GLY A 189 1 7 HELIX 4 4 TYR A 282 ALA A 285 5 4 HELIX 5 5 LYS A 308 TRP A 312 5 5 HELIX 6 6 ASP A 335 GLY A 339 5 5 HELIX 7 7 MET A 341 TRP A 346 5 6 HELIX 8 8 THR B 5 LYS B 11 1 7 HELIX 9 9 GLN B 168 LEU B 172 5 5 HELIX 10 10 THR B 183 GLY B 189 1 7 HELIX 11 11 TYR B 282 ALA B 285 5 4 HELIX 12 12 LYS B 308 TRP B 312 5 5 HELIX 13 13 MET B 341 TRP B 346 5 6 SHEET 1 A 4 ASP A 18 LEU A 23 0 SHEET 2 A 4 LEU A 446 THR A 450 -1 O LEU A 446 N ILE A 22 SHEET 3 A 4 LEU A 419 THR A 423 -1 N LEU A 419 O PHE A 449 SHEET 4 A 4 TYR A 407 ALA A 412 -1 N ARG A 408 O LEU A 422 SHEET 1 B 4 PRO A 29 TRP A 34 0 SHEET 2 B 4 ILE A 40 GLU A 44 -1 O TRP A 41 N LEU A 33 SHEET 3 B 4 LYS A 49 VAL A 53 -1 O LYS A 49 N GLU A 44 SHEET 4 B 4 VAL A 60 GLN A 65 -1 O LYS A 61 N ARG A 52 SHEET 1 C 4 LEU A 79 PHE A 84 0 SHEET 2 C 4 TYR A 93 LYS A 101 -1 N TYR A 95 O ALA A 83 SHEET 3 C 4 ASN A 112 ASN A 122 -1 N GLN A 113 O PHE A 100 SHEET 4 C 4 THR A 127 LEU A 138 -1 O THR A 127 N ASN A 122 SHEET 1 D 4 SER A 146 ILE A 151 0 SHEET 2 D 4 ILE A 157 ILE A 161 -1 N TYR A 158 O VAL A 150 SHEET 3 D 4 LYS A 198 LEU A 202 -1 O LYS A 198 N ILE A 161 SHEET 4 D 4 ILE A 222 LEU A 225 -1 N TYR A 223 O VAL A 199 SHEET 1 E 2 SER A 214 PHE A 215 0 SHEET 2 E 2 VAL A 218 VAL A 219 -1 N VAL A 218 O PHE A 215 SHEET 1 F 4 ASN A 229 PHE A 235 0 SHEET 2 F 4 LEU A 241 GLN A 246 -1 O LEU A 242 N ALA A 234 SHEET 3 F 4 ASP A 252 ILE A 257 -1 N GLU A 253 O GLU A 245 SHEET 4 F 4 LYS A 322 LEU A 324 -1 O LYS A 322 N ILE A 254 SHEET 1 G 2 TYR A 279 ALA A 280 0 SHEET 2 G 2 VAL A 306 THR A 307 -1 N THR A 307 O TYR A 279 SHEET 1 H 4 TYR A 355 VAL A 356 0 SHEET 2 H 4 THR A 370 SER A 375 -1 N LEU A 372 O TYR A 355 SHEET 3 H 4 VAL A 380 LEU A 386 -1 O VAL A 380 N SER A 375 SHEET 4 H 4 THR A 393 MET A 400 -1 N TYR A 394 O LYS A 385 SHEET 1 I 2 VAL A 429 GLN A 430 0 SHEET 2 I 2 VAL A 436 THR A 437 -1 O THR A 437 N VAL A 429 SHEET 1 J 4 PHE B 17 LEU B 23 0 SHEET 2 J 4 LEU B 446 TYR B 451 -1 N LEU B 446 O LEU B 23 SHEET 3 J 4 VAL B 418 THR B 423 -1 O LEU B 419 N PHE B 449 SHEET 4 J 4 TYR B 407 ALA B 412 -1 N ARG B 408 O LEU B 422 SHEET 1 K 4 PRO B 29 TRP B 34 0 SHEET 2 K 4 ILE B 40 GLU B 44 -1 O TRP B 41 N LEU B 33 SHEET 3 K 4 LYS B 49 VAL B 53 -1 O LYS B 49 N GLU B 44 SHEET 4 K 4 VAL B 60 GLN B 65 -1 O LYS B 61 N ARG B 52 SHEET 1 L 4 LEU B 79 PHE B 84 0 SHEET 2 L 4 TYR B 93 LYS B 101 -1 N TYR B 95 O ALA B 83 SHEET 3 L 4 ASN B 112 ASN B 122 -1 N GLN B 113 O PHE B 100 SHEET 4 L 4 THR B 127 LEU B 138 -1 O THR B 127 N ASN B 122 SHEET 1 M 4 SER B 146 ILE B 151 0 SHEET 2 M 4 ILE B 157 ILE B 161 -1 N TYR B 158 O VAL B 150 SHEET 3 M 4 LYS B 198 LEU B 202 -1 O LYS B 198 N ILE B 161 SHEET 4 M 4 ILE B 222 LEU B 225 -1 N TYR B 223 O VAL B 199 SHEET 1 N 2 SER B 214 PHE B 215 0 SHEET 2 N 2 VAL B 218 VAL B 219 -1 O VAL B 218 N PHE B 215 SHEET 1 O 4 ASN B 229 PHE B 235 0 SHEET 2 O 4 LEU B 241 GLN B 246 -1 O LEU B 242 N ALA B 234 SHEET 3 O 4 ASP B 252 LEU B 256 -1 N GLU B 253 O GLU B 245 SHEET 4 O 4 LYS B 322 LEU B 324 -1 O LYS B 322 N ILE B 254 SHEET 1 P 2 TYR B 279 ALA B 280 0 SHEET 2 P 2 VAL B 306 THR B 307 -1 O THR B 307 N TYR B 279 SHEET 1 Q 4 TYR B 355 VAL B 356 0 SHEET 2 Q 4 THR B 370 PRO B 374 -1 N LEU B 372 O TYR B 355 SHEET 3 Q 4 ILE B 381 LEU B 386 -1 N PHE B 382 O VAL B 373 SHEET 4 Q 4 THR B 393 MET B 400 -1 N TYR B 394 O LYS B 385 SHEET 1 R 2 VAL B 429 GLN B 430 0 SHEET 2 R 2 VAL B 436 THR B 437 -1 N THR B 437 O VAL B 429 SSBOND 1 CYS A 338 CYS A 345 1555 1555 2.04 SSBOND 2 CYS B 338 CYS B 345 1555 1555 2.02 LINK O GLY A 247 CA CA A 503 1555 1555 2.36 LINK O PRO A 248 CA CA A 503 1555 1555 2.45 LINK OE1 GLU A 253 CA CA A 502 1555 1555 2.44 LINK OE2 GLU A 253 CA CA A 502 1555 1555 2.29 LINK O TYR A 263 CA CA A 502 1555 1555 2.27 LINK O ALA A 269 CA CA A 501 1555 1555 2.39 LINK O TYR A 271 CA CA A 501 1555 1555 2.33 LINK OD1 ASP A 273 CA CA A 501 1555 1555 2.43 LINK OE1 GLU A 309 CA CA A 501 1555 1555 2.52 LINK OE2 GLU A 309 CA CA A 501 1555 1555 2.43 LINK CA CA A 501 O HOH A 520 1555 1555 2.41 LINK CA CA A 501 O HOH A 545 1555 1555 2.38 LINK CA CA A 502 O HOH A 505 1555 1555 2.57 LINK CA CA A 502 O HOH A 518 1555 1555 2.44 LINK CA CA A 502 O HOH A 526 1555 1555 2.48 LINK CA CA A 502 O HOH A 534 1555 1555 2.45 LINK CA CA A 503 O5 PQQ A 504 1555 1555 2.37 LINK CA CA A 503 N6 PQQ A 504 1555 1555 2.43 LINK CA CA A 503 O7A PQQ A 504 1555 1555 2.32 LINK CA CA A 503 O HOH A 529 1555 1555 2.37 LINK CA CA A 503 O HOH A 543 1555 1555 2.46 LINK O GLY B 247 CA CA B 503 1555 1555 2.40 LINK O PRO B 248 CA CA B 503 1555 1555 2.47 LINK OE1 GLU B 253 CA CA B 501 1555 1555 2.43 LINK OE2 GLU B 253 CA CA B 501 1555 1555 2.31 LINK O TYR B 263 CA CA B 501 1555 1555 2.30 LINK O ALA B 269 CA CA B 502 1555 1555 2.38 LINK O TYR B 271 CA CA B 502 1555 1555 2.31 LINK OD1 ASP B 273 CA CA B 502 1555 1555 2.51 LINK OE1 GLU B 309 CA CA B 502 1555 1555 2.58 LINK OE2 GLU B 309 CA CA B 502 1555 1555 2.38 LINK CA CA B 501 O HOH B 505 1555 1555 2.51 LINK CA CA B 501 O HOH B 506 1555 1555 2.46 LINK CA CA B 501 O HOH B 511 1555 1555 2.42 LINK CA CA B 501 O HOH B 547 1555 1555 2.46 LINK CA CA B 502 O HOH B 510 1555 1555 2.44 LINK CA CA B 502 O HOH B 513 1555 1555 2.41 LINK CA CA B 503 O7A PQQ B 504 1555 1555 2.36 LINK CA CA B 503 N6 PQQ B 504 1555 1555 2.41 LINK CA CA B 503 O5 PQQ B 504 1555 1555 2.35 LINK CA CA B 503 O HOH B 521 1555 1555 2.43 LINK CA CA B 503 O HOH B 550 1555 1555 2.38 CISPEP 1 TRP A 265 PRO A 266 0 -1.59 CISPEP 2 LEU A 324 TYR A 325 0 7.21 CISPEP 3 TRP B 265 PRO B 266 0 -1.10 CISPEP 4 LEU B 324 TYR B 325 0 7.46 CRYST1 60.899 91.972 85.747 90.00 104.62 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016421 0.000000 0.004283 0.00000 SCALE2 0.000000 0.010873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012053 0.00000 CONECT 1905 6978 CONECT 1909 6978 CONECT 1950 6977 CONECT 1951 6977 CONECT 2019 6977 CONECT 2071 6976 CONECT 2080 6976 CONECT 2104 6976 CONECT 2362 6976 CONECT 2363 6976 CONECT 2602 2656 CONECT 2656 2602 CONECT 5376 7017 CONECT 5380 7017 CONECT 5421 7015 CONECT 5422 7015 CONECT 5490 7015 CONECT 5542 7016 CONECT 5551 7016 CONECT 5575 7016 CONECT 5833 7016 CONECT 5834 7016 CONECT 6073 6127 CONECT 6127 6073 CONECT 6964 6965 6969 6971 CONECT 6965 6964 6966 6972 CONECT 6966 6965 6967 6973 CONECT 6967 6966 6968 6974 CONECT 6968 6967 6975 CONECT 6969 6964 6970 6974 CONECT 6970 6969 CONECT 6971 6964 CONECT 6972 6965 CONECT 6973 6966 CONECT 6974 6967 6969 CONECT 6975 6968 CONECT 6976 2071 2080 2104 2362 CONECT 6976 2363 7057 7082 CONECT 6977 1950 1951 2019 7042 CONECT 6977 7055 7063 7071 CONECT 6978 1905 1909 6990 6992 CONECT 6978 6995 7066 7080 CONECT 6979 6980 6986 CONECT 6980 6979 6981 6984 CONECT 6981 6980 6982 6983 CONECT 6982 6981 CONECT 6983 6981 CONECT 6984 6980 6985 CONECT 6985 6984 6986 6987 CONECT 6986 6979 6985 7002 CONECT 6987 6985 6988 6989 CONECT 6988 6987 CONECT 6989 6987 6990 6991 CONECT 6990 6978 6989 CONECT 6991 6989 6992 7002 CONECT 6992 6978 6991 6993 CONECT 6993 6992 6994 6997 CONECT 6994 6993 6995 6996 CONECT 6995 6978 6994 CONECT 6996 6994 CONECT 6997 6993 6998 CONECT 6998 6997 6999 7002 CONECT 6999 6998 7000 7001 CONECT 7000 6999 CONECT 7001 6999 CONECT 7002 6986 6991 6998 CONECT 7003 7004 7008 7010 CONECT 7004 7003 7005 7011 CONECT 7005 7004 7006 7012 CONECT 7006 7005 7007 7013 CONECT 7007 7006 7014 CONECT 7008 7003 7009 7013 CONECT 7009 7008 CONECT 7010 7003 CONECT 7011 7004 CONECT 7012 7005 CONECT 7013 7006 7008 CONECT 7014 7007 CONECT 7015 5421 5422 5490 7323 CONECT 7015 7324 7329 7365 CONECT 7016 5542 5551 5575 5833 CONECT 7016 5834 7328 7331 CONECT 7017 5376 5380 7029 7031 CONECT 7017 7034 7339 7368 CONECT 7018 7019 7025 CONECT 7019 7018 7020 7023 CONECT 7020 7019 7021 7022 CONECT 7021 7020 CONECT 7022 7020 CONECT 7023 7019 7024 CONECT 7024 7023 7025 7026 CONECT 7025 7018 7024 7041 CONECT 7026 7024 7027 7028 CONECT 7027 7026 CONECT 7028 7026 7029 7030 CONECT 7029 7017 7028 CONECT 7030 7028 7031 7041 CONECT 7031 7017 7030 7032 CONECT 7032 7031 7033 7036 CONECT 7033 7032 7034 7035 CONECT 7034 7017 7033 CONECT 7035 7033 CONECT 7036 7032 7037 CONECT 7037 7036 7038 7041 CONECT 7038 7037 7039 7040 CONECT 7039 7038 CONECT 7040 7038 CONECT 7041 7025 7030 7037 CONECT 7042 6977 CONECT 7055 6977 CONECT 7057 6976 CONECT 7063 6977 CONECT 7066 6978 CONECT 7071 6977 CONECT 7080 6978 CONECT 7082 6976 CONECT 7323 7015 CONECT 7324 7015 CONECT 7328 7016 CONECT 7329 7015 CONECT 7331 7016 CONECT 7339 7017 CONECT 7365 7015 CONECT 7368 7017 MASTER 376 0 10 13 60 0 0 6 7629 2 124 70 END