data_1CQ5 # _entry.id 1CQ5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1CQ5 pdb_00001cq5 10.2210/pdb1cq5/pdb RCSB RCSB009481 ? ? WWPDB D_1000009481 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 28SR 'NMR STRUCTURE OF THE MOST CONSERVED PART OF SRP DOMAIN IV (ENSEMBLE OF 7)' unspecified PDB 28SP 'NMR STRUCTURE OF THE MOST CONSERVED PART OF SRP DOMAIN IV (AVERAGE STRUCTURE)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1CQ5 _pdbx_database_status.recvd_initial_deposition_date 1999-08-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schmitz, U.' 1 'James, T.L.' 2 'Behrens, S.' 3 'Freymann, D.M.' 4 'Lukavsky, P.' 5 'Walter, P.' 6 # _citation.id primary _citation.title 'Structure of the phylogenetically most conserved domain of SRP RNA.' _citation.journal_abbrev RNA _citation.journal_volume 5 _citation.page_first 1419 _citation.page_last 1429 _citation.year 1999 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10580470 _citation.pdbx_database_id_DOI 10.1017/S1355838299991458 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schmitz, U.' 1 ? primary 'Behrens, S.' 2 ? primary 'Freymann, D.M.' 3 ? primary 'Keenan, R.J.' 4 ? primary 'Lukavsky, P.' 5 ? primary 'Walter, P.' 6 ? primary 'James, T.L.' 7 ? # _cell.entry_id 1CQ5 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CQ5 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'SRP RNA DOMAIN IV' _entity.formula_weight 13963.401 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'MODIFIED E. COLI SEQUENCE' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCGUUUACCAGGUCAGGUCCGGAAGGAAGCAGCCAAGGCGCC _entity_poly.pdbx_seq_one_letter_code_can GGCGUUUACCAGGUCAGGUCCGGAAGGAAGCAGCCAAGGCGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 G n 1 5 U n 1 6 U n 1 7 U n 1 8 A n 1 9 C n 1 10 C n 1 11 A n 1 12 G n 1 13 G n 1 14 U n 1 15 C n 1 16 A n 1 17 G n 1 18 G n 1 19 U n 1 20 C n 1 21 C n 1 22 G n 1 23 G n 1 24 A n 1 25 A n 1 26 G n 1 27 G n 1 28 A n 1 29 A n 1 30 G n 1 31 C n 1 32 A n 1 33 G n 1 34 C n 1 35 C n 1 36 A n 1 37 A n 1 38 G n 1 39 G n 1 40 C n 1 41 G n 1 42 C n 1 43 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'IN VITRO TRANSCIPTION FROM DNA TEMPLATES' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1CQ5 _struct_ref.pdbx_db_accession 1CQ5 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1CQ5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 43 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1CQ5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 43 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 43 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 3D_13C-SEPARATED_NOESY 1 3 1 DQF-COSY 1 4 1 TOCSY 1 5 1 '3D HCCH-TOCSY' 1 6 1 '3D HCCH-COSY' 1 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 288 AMBIENT 6.5 ? ? K 2 303 AMBIENT 6.5 ? ? K 3 308 AMBIENT 6.5 ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.25 - 1.2 MM RNA, 10 MM POTASSIUM PHOSHPATE, 10 MM MAGNESIUM CHLORIDE, PH 6.5' ? 2 '0.25 MM RNA 10 MM POTASSIUM PHOSHPATE, 10 MM MAGNESIUM CHLORIDE, PH 6.5' ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model UNITYPLUS _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 1CQ5 _pdbx_nmr_refine.method 'TORSION ANGLE DYNAMICS, RESTRAINED MOLECULAR DYNAMICS, COMPLETE RELAXATION MATRIX ANALYSIS' _pdbx_nmr_refine.details '16.4 DISTANCE RESTRAINTS/RESIDUE' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1CQ5 _pdbx_nmr_details.text 'G- AND A-SINGLE NUCLEOTIDE ISOTOPE LABELED SAMPLES WERE USED BESIDES A UNIFORMLY LABELED RNA' # _pdbx_nmr_ensemble.entry_id 1CQ5 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1CQ5 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal 'data analysis' Sparky 92 'D.KNELLER, T.GODDARD' 1 'iterative matrix relaxation' MARDIGRAS 92 'HE LIU, B.BORGIAS, M.TONELLI' 2 refinement DYANA 1.4 'P. GUENTERT' 3 'structure solution' Amber 4.1 'D.A. PEARLMAN ET AL.' 4 'data analysis' Curves 3.0 'R. LAVERY' 5 # _exptl.entry_id 1CQ5 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1CQ5 _struct.title 'NMR STRUCTURE OF SRP RNA DOMAIN IV' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1CQ5 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'SRP, RNA STRUCTURE, DOMAIN IV, SIGNAL SEQUENCE RECOGNITION, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 1 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 1 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 1 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 2 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 2 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 2 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 3 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 3 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 3 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 4 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 4 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 4 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 N3 ? ? ? 1_555 A G 39 O6 ? ? A U 5 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 5 O2 ? ? ? 1_555 A G 39 N1 ? ? A U 5 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 38 O6 ? ? A U 6 A G 38 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A C 9 N4 ? ? ? 1_555 A A 36 N3 ? ? A C 9 A A 36 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog17 hydrog ? ? A A 11 N6 ? ? ? 1_555 A A 36 N3 ? ? A A 11 A A 36 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog18 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 12 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 12 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 12 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 13 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 13 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 13 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 14 N3 ? ? ? 1_555 A G 33 O6 ? ? A U 14 A G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A U 14 O2 ? ? ? 1_555 A G 33 N1 ? ? A U 14 A G 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A C 15 N4 ? ? ? 1_555 A C 31 O2 ? ? A C 15 A C 31 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog27 hydrog ? ? A C 15 O2 ? ? ? 1_555 A A 32 N6 ? ? A C 15 A A 32 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 18 N1 ? ? ? 1_555 A A 29 N1 ? ? A G 18 A A 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog29 hydrog ? ? A G 18 O6 ? ? ? 1_555 A A 29 N6 ? ? A G 18 A A 29 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog30 hydrog ? ? A U 19 N3 ? ? ? 1_555 A A 28 N1 ? ? A U 19 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 19 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 19 A A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 20 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 20 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 20 A G 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 21 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 21 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 21 A G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 22 N2 ? ? ? 1_555 A A 25 N7 ? ? A G 22 A A 25 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1CQ5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1CQ5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 U 5 5 5 U U A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 A 8 8 8 A A A . n A 1 9 C 9 9 9 C C A . n A 1 10 C 10 10 10 C C A . n A 1 11 A 11 11 11 A A A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 U 14 14 14 U U A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 G 23 23 23 G G A . n A 1 24 A 24 24 24 A A A . n A 1 25 A 25 25 25 A A A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 C 31 31 31 C C A . n A 1 32 A 32 32 32 A A A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 C 35 35 35 C C A . n A 1 36 A 36 36 36 A A A . n A 1 37 A 37 37 37 A A A . n A 1 38 G 38 38 38 G G A . n A 1 39 G 39 39 39 G G A . n A 1 40 C 40 40 40 C C A . n A 1 41 G 41 41 41 G G A . n A 1 42 C 42 42 42 C C A . n A 1 43 C 43 43 43 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-08-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO2'" A U 7 ? ? OP2 A A 8 ? ? 1.37 2 1 "HO2'" A C 31 ? ? OP2 A A 32 ? ? 1.38 3 1 "HO2'" A A 32 ? ? OP1 A G 33 ? ? 1.39 4 1 "HO2'" A A 8 ? ? OP1 A C 9 ? ? 1.39 5 1 "HO2'" A U 14 ? ? OP1 A C 15 ? ? 1.41 6 1 "HO2'" A C 35 ? ? OP1 A A 36 ? ? 1.41 7 1 "HO2'" A G 23 ? ? OP1 A A 24 ? ? 1.41 8 1 "HO2'" A A 11 ? ? OP2 A G 12 ? ? 1.41 9 1 "HO2'" A A 16 ? ? OP1 A G 17 ? ? 1.41 10 1 "HO2'" A A 25 ? ? OP1 A G 26 ? ? 1.43 11 1 "HO2'" A C 9 ? ? OP1 A C 10 ? ? 1.45 12 1 O6 A G 17 ? ? "HO2'" A G 30 ? ? 1.51 13 1 "HO2'" A A 37 ? ? OP1 A G 38 ? ? 1.53 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A U 7 ? ? "C1'" A U 7 ? ? 1.468 1.526 -0.058 0.008 N 2 1 N1 A G 22 ? ? C2 A G 22 ? ? 1.322 1.373 -0.051 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 116.05 108.50 7.55 0.70 N 2 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.25 108.50 5.75 0.70 N 3 1 "O4'" A G 4 ? ? "C1'" A G 4 ? ? N9 A G 4 ? ? 115.19 108.50 6.69 0.70 N 4 1 "C3'" A U 5 ? ? "C2'" A U 5 ? ? "C1'" A U 5 ? ? 96.99 101.30 -4.31 0.70 N 5 1 "O4'" A U 5 ? ? "C1'" A U 5 ? ? N1 A U 5 ? ? 114.38 108.50 5.88 0.70 N 6 1 C4 A U 5 ? ? C5 A U 5 ? ? C6 A U 5 ? ? 123.86 119.70 4.16 0.60 N 7 1 C5 A U 5 ? ? C6 A U 5 ? ? N1 A U 5 ? ? 119.67 122.70 -3.03 0.50 N 8 1 "C3'" A U 6 ? ? "C2'" A U 6 ? ? "C1'" A U 6 ? ? 106.69 101.50 5.19 0.80 N 9 1 "C4'" A U 7 ? ? "C3'" A U 7 ? ? "C2'" A U 7 ? ? 112.49 102.60 9.89 1.00 N 10 1 "C3'" A U 7 ? ? "C2'" A U 7 ? ? "C1'" A U 7 ? ? 95.78 101.30 -5.52 0.70 N 11 1 C6 A U 7 ? ? N1 A U 7 ? ? C2 A U 7 ? ? 117.21 121.00 -3.79 0.60 N 12 1 N3 A U 7 ? ? C2 A U 7 ? ? O2 A U 7 ? ? 116.65 122.20 -5.55 0.70 N 13 1 C6 A U 7 ? ? N1 A U 7 ? ? "C1'" A U 7 ? ? 108.31 121.20 -12.89 1.40 N 14 1 C2 A U 7 ? ? N1 A U 7 ? ? "C1'" A U 7 ? ? 127.23 117.70 9.53 1.20 N 15 1 "C5'" A A 8 ? ? "C4'" A A 8 ? ? "C3'" A A 8 ? ? 106.24 115.20 -8.96 1.40 N 16 1 N9 A A 8 ? ? "C1'" A A 8 ? ? "C2'" A A 8 ? ? 123.02 114.00 9.02 1.30 N 17 1 "O5'" A C 9 ? ? "C5'" A C 9 ? ? "C4'" A C 9 ? ? 103.20 109.40 -6.20 0.80 N 18 1 "O4'" A C 9 ? ? "C1'" A C 9 ? ? N1 A C 9 ? ? 116.96 108.50 8.46 0.70 N 19 1 C5 A C 9 ? ? C6 A C 9 ? ? N1 A C 9 ? ? 117.83 121.00 -3.17 0.50 N 20 1 N3 A C 9 ? ? C4 A C 9 ? ? N4 A C 9 ? ? 112.84 118.00 -5.16 0.70 N 21 1 C4 A A 11 ? ? C5 A A 11 ? ? C6 A A 11 ? ? 113.84 117.00 -3.16 0.50 N 22 1 C5 A A 11 ? ? C6 A A 11 ? ? N1 A A 11 ? ? 121.43 117.70 3.73 0.50 N 23 1 N1 A A 11 ? ? C6 A A 11 ? ? N6 A A 11 ? ? 111.02 118.60 -7.58 0.60 N 24 1 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 115.64 108.50 7.14 0.70 N 25 1 "O4'" A G 13 ? ? "C1'" A G 13 ? ? N9 A G 13 ? ? 113.10 108.50 4.60 0.70 N 26 1 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 112.98 108.50 4.48 0.70 N 27 1 "O5'" A A 16 ? ? "C5'" A A 16 ? ? "C4'" A A 16 ? ? 102.41 109.40 -6.99 0.80 N 28 1 N1 A A 16 ? ? C6 A A 16 ? ? N6 A A 16 ? ? 114.39 118.60 -4.21 0.60 N 29 1 N9 A G 17 ? ? "C1'" A G 17 ? ? "C2'" A G 17 ? ? 99.68 112.00 -12.32 1.10 N 30 1 N1 A G 18 ? ? C6 A G 18 ? ? O6 A G 18 ? ? 116.27 119.90 -3.63 0.60 N 31 1 "C5'" A U 19 ? ? "C4'" A U 19 ? ? "C3'" A U 19 ? ? 105.42 115.20 -9.78 1.40 N 32 1 N1 A G 22 ? ? C2 A G 22 ? ? N2 A G 22 ? ? 108.54 116.20 -7.66 0.90 N 33 1 "O4'" A A 24 ? ? "C1'" A A 24 ? ? N9 A A 24 ? ? 102.65 108.20 -5.55 0.80 N 34 1 "O4'" A A 25 ? ? "C1'" A A 25 ? ? N9 A A 25 ? ? 119.38 108.50 10.88 0.70 N 35 1 "O4'" A G 27 ? ? "C1'" A G 27 ? ? N9 A G 27 ? ? 114.32 108.50 5.82 0.70 N 36 1 "O4'" A A 28 ? ? "C1'" A A 28 ? ? N9 A A 28 ? ? 114.63 108.50 6.13 0.70 N 37 1 C5 A A 28 ? ? C6 A A 28 ? ? N1 A A 28 ? ? 121.00 117.70 3.30 0.50 N 38 1 N1 A A 28 ? ? C6 A A 28 ? ? N6 A A 28 ? ? 114.98 118.60 -3.62 0.60 N 39 1 "O4'" A A 29 ? ? "C1'" A A 29 ? ? N9 A A 29 ? ? 113.60 108.50 5.10 0.70 N 40 1 N1 A A 29 ? ? C6 A A 29 ? ? N6 A A 29 ? ? 113.48 118.60 -5.12 0.60 N 41 1 "O4'" A G 30 ? ? "C1'" A G 30 ? ? N9 A G 30 ? ? 114.31 108.50 5.81 0.70 N 42 1 C5 A A 32 ? ? C6 A A 32 ? ? N1 A A 32 ? ? 121.15 117.70 3.45 0.50 N 43 1 N1 A G 33 ? ? C6 A G 33 ? ? O6 A G 33 ? ? 115.84 119.90 -4.06 0.60 N 44 1 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 112.97 108.50 4.47 0.70 N 45 1 C4 A A 36 ? ? C5 A A 36 ? ? C6 A A 36 ? ? 113.79 117.00 -3.21 0.50 N 46 1 C5 A A 36 ? ? C6 A A 36 ? ? N1 A A 36 ? ? 120.79 117.70 3.09 0.50 N 47 1 N1 A A 36 ? ? C6 A A 36 ? ? N6 A A 36 ? ? 114.58 118.60 -4.02 0.60 N 48 1 "C5'" A A 37 ? ? "C4'" A A 37 ? ? "O4'" A A 37 ? ? 115.24 109.80 5.44 0.90 N 49 1 C5 A A 37 ? ? C6 A A 37 ? ? N1 A A 37 ? ? 121.13 117.70 3.43 0.50 N 50 1 N1 A A 37 ? ? C6 A A 37 ? ? N6 A A 37 ? ? 114.27 118.60 -4.33 0.60 N 51 1 "C4'" A G 38 ? ? "C3'" A G 38 ? ? "C2'" A G 38 ? ? 96.36 102.60 -6.24 1.00 N 52 1 "O4'" A G 38 ? ? "C1'" A G 38 ? ? N9 A G 38 ? ? 118.15 108.50 9.65 0.70 N 53 1 C6 A G 39 ? ? C5 A G 39 ? ? N7 A G 39 ? ? 134.12 130.40 3.72 0.60 N 54 1 N3 A G 39 ? ? C2 A G 39 ? ? N2 A G 39 ? ? 114.70 119.90 -5.20 0.70 N 55 1 N1 A G 39 ? ? C6 A G 39 ? ? O6 A G 39 ? ? 115.93 119.90 -3.97 0.60 N 56 1 "O4'" A C 40 ? ? "C1'" A C 40 ? ? N1 A C 40 ? ? 114.08 108.50 5.58 0.70 N 57 1 N3 A C 40 ? ? C2 A C 40 ? ? O2 A C 40 ? ? 117.69 121.90 -4.21 0.70 N 58 1 "O4'" A C 42 ? ? "C1'" A C 42 ? ? N1 A C 42 ? ? 116.05 108.50 7.55 0.70 N 59 1 N3 A C 42 ? ? C2 A C 42 ? ? O2 A C 42 ? ? 117.34 121.90 -4.56 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 2 ? ? 0.117 'SIDE CHAIN' 2 1 C A 3 ? ? 0.092 'SIDE CHAIN' 3 1 U A 5 ? ? 0.074 'SIDE CHAIN' 4 1 U A 6 ? ? 0.115 'SIDE CHAIN' 5 1 U A 7 ? ? 0.071 'SIDE CHAIN' 6 1 A A 8 ? ? 0.094 'SIDE CHAIN' 7 1 C A 9 ? ? 0.144 'SIDE CHAIN' 8 1 C A 10 ? ? 0.242 'SIDE CHAIN' 9 1 A A 11 ? ? 0.069 'SIDE CHAIN' 10 1 G A 12 ? ? 0.061 'SIDE CHAIN' 11 1 G A 13 ? ? 0.068 'SIDE CHAIN' 12 1 U A 14 ? ? 0.061 'SIDE CHAIN' 13 1 A A 16 ? ? 0.069 'SIDE CHAIN' 14 1 U A 19 ? ? 0.097 'SIDE CHAIN' 15 1 C A 20 ? ? 0.104 'SIDE CHAIN' 16 1 G A 22 ? ? 0.173 'SIDE CHAIN' 17 1 G A 23 ? ? 0.101 'SIDE CHAIN' 18 1 A A 24 ? ? 0.101 'SIDE CHAIN' 19 1 A A 25 ? ? 0.079 'SIDE CHAIN' 20 1 G A 26 ? ? 0.066 'SIDE CHAIN' 21 1 G A 30 ? ? 0.137 'SIDE CHAIN' 22 1 G A 33 ? ? 0.078 'SIDE CHAIN' 23 1 C A 34 ? ? 0.060 'SIDE CHAIN' 24 1 A A 36 ? ? 0.130 'SIDE CHAIN' 25 1 A A 37 ? ? 0.201 'SIDE CHAIN' 26 1 G A 38 ? ? 0.062 'SIDE CHAIN' 27 1 G A 39 ? ? 0.087 'SIDE CHAIN' 28 1 C A 40 ? ? 0.092 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1CQ5 'double helix' 1CQ5 'a-form double helix' 1CQ5 tetraloop 1CQ5 'mismatched base pair' 1CQ5 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 43 1_555 -0.434 -0.145 0.119 14.880 5.047 1.165 1 A_G1:C43_A A 1 ? A 43 ? 19 1 1 A G 2 1_555 A C 42 1_555 -0.609 -0.182 0.346 27.897 -5.010 -0.339 2 A_G2:C42_A A 2 ? A 42 ? 19 1 1 A C 3 1_555 A G 41 1_555 0.076 -0.166 -0.292 1.555 -2.936 -0.367 3 A_C3:G41_A A 3 ? A 41 ? 19 1 1 A G 4 1_555 A C 40 1_555 0.222 -0.108 -0.348 -22.089 -16.897 -1.111 4 A_G4:C40_A A 4 ? A 40 ? 19 1 1 A U 5 1_555 A G 39 1_555 2.324 -0.135 0.586 -32.509 3.761 4.372 5 A_U5:G39_A A 5 ? A 39 ? 28 ? 1 A U 6 1_555 A G 38 1_555 3.174 -0.860 -0.662 -12.010 -6.650 -33.424 6 A_U6:G38_A A 6 ? A 38 ? ? ? 1 A A 11 1_555 A A 36 1_555 -5.563 -3.565 -1.271 -13.399 58.010 -14.369 7 A_A11:A36_A A 11 ? A 36 ? ? 10 1 A G 12 1_555 A C 35 1_555 -0.326 -0.216 -0.422 0.106 3.436 -1.302 8 A_G12:C35_A A 12 ? A 35 ? 19 1 1 A G 13 1_555 A C 34 1_555 -0.275 -0.184 -0.163 7.345 -1.585 -1.366 9 A_G13:C34_A A 13 ? A 34 ? 19 1 1 A U 14 1_555 A G 33 1_555 2.355 -0.563 -0.752 -3.538 -6.079 5.879 10 A_U14:G33_A A 14 ? A 33 ? 28 ? 1 A C 15 1_555 A C 31 1_555 -2.550 -2.044 1.179 15.260 43.282 36.000 11 A_C15:C31_A A 15 ? A 31 ? ? 1 1 A G 18 1_555 A A 29 1_555 -0.115 1.502 -0.477 22.557 -23.435 -5.083 12 A_G18:A29_A A 18 ? A 29 ? 8 ? 1 A U 19 1_555 A A 28 1_555 -0.351 0.088 -0.422 23.093 -18.443 -5.906 13 A_U19:A28_A A 19 ? A 28 ? 20 1 1 A C 20 1_555 A G 27 1_555 0.343 -0.189 0.008 7.632 -17.108 0.461 14 A_C20:G27_A A 20 ? A 27 ? 19 1 1 A C 21 1_555 A G 26 1_555 0.550 -0.291 0.305 3.139 -1.550 -1.585 15 A_C21:G26_A A 21 ? A 26 ? 19 1 1 A G 22 1_555 A A 25 1_555 7.346 -5.330 0.221 8.449 -16.655 -53.260 16 A_G22:A25_A A 22 ? A 25 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 43 1_555 A G 2 1_555 A C 42 1_555 -0.243 -1.279 2.857 -4.354 0.431 37.797 -2.010 -0.111 2.852 0.663 6.694 38.040 1 AA_G1G2:C42C43_AA A 1 ? A 43 ? A 2 ? A 42 ? 1 A G 2 1_555 A C 42 1_555 A C 3 1_555 A G 41 1_555 -0.689 -1.800 3.788 -0.487 13.013 33.628 -4.882 1.041 2.924 21.517 0.805 35.994 2 AA_G2C3:G41C42_AA A 2 ? A 42 ? A 3 ? A 41 ? 1 A C 3 1_555 A G 41 1_555 A G 4 1_555 A C 40 1_555 0.196 -1.248 3.850 2.964 9.305 34.883 -3.493 0.157 3.420 15.158 -4.828 36.183 3 AA_C3G4:C40G41_AA A 3 ? A 41 ? A 4 ? A 40 ? 1 A G 4 1_555 A C 40 1_555 A U 5 1_555 A G 39 1_555 0.846 -1.409 3.287 0.740 10.164 40.905 -2.968 -1.104 2.887 14.278 -1.039 42.102 4 AA_G4U5:G39C40_AA A 4 ? A 40 ? A 5 ? A 39 ? 1 A U 5 1_555 A G 39 1_555 A U 6 1_555 A G 38 1_555 -2.153 -0.445 2.846 9.499 -9.012 37.761 0.190 4.044 2.302 -13.440 -14.167 39.888 5 AA_U5U6:G38G39_AA A 5 ? A 39 ? A 6 ? A 38 ? 1 A A 11 1_555 A A 36 1_555 A G 12 1_555 A C 35 1_555 -0.249 -0.338 3.379 -7.855 3.359 44.281 -0.754 -0.407 3.341 4.408 10.308 45.057 6 AA_A11G12:C35A36_AA A 11 ? A 36 ? A 12 ? A 35 ? 1 A G 12 1_555 A C 35 1_555 A G 13 1_555 A C 34 1_555 0.102 -0.699 3.135 -2.196 6.548 35.283 -2.011 -0.460 2.950 10.677 3.580 35.932 7 AA_G12G13:C34C35_AA A 12 ? A 35 ? A 13 ? A 34 ? 1 A G 13 1_555 A C 34 1_555 A U 14 1_555 A G 33 1_555 0.808 -1.542 3.430 7.207 13.540 39.861 -3.489 -0.385 2.880 19.027 -10.128 42.598 8 AA_G13U14:G33C34_AA A 13 ? A 34 ? A 14 ? A 33 ? 1 A U 14 1_555 A G 33 1_555 A C 15 1_555 A C 31 1_555 4.635 -0.885 2.034 -18.733 -14.187 26.909 -0.891 -8.321 -0.500 -25.232 33.317 35.582 9 AA_U14C15:C31G33_AA A 14 ? A 33 ? A 15 ? A 31 ? 1 A G 18 1_555 A A 29 1_555 A U 19 1_555 A A 28 1_555 -0.112 -1.708 3.180 -4.973 5.235 26.309 -4.834 -0.914 2.769 11.235 10.673 27.265 10 AA_G18U19:A28A29_AA A 18 ? A 29 ? A 19 ? A 28 ? 1 A U 19 1_555 A A 28 1_555 A C 20 1_555 A G 27 1_555 -0.139 -1.339 3.481 -6.851 5.220 39.598 -2.545 -0.599 3.265 7.597 9.969 40.488 11 AA_U19C20:G27A28_AA A 19 ? A 28 ? A 20 ? A 27 ? 1 A C 20 1_555 A G 27 1_555 A C 21 1_555 A G 26 1_555 -0.659 -1.316 3.265 -3.609 7.831 34.602 -3.249 0.570 2.959 12.919 5.954 35.628 12 AA_C20C21:G26G27_AA A 20 ? A 27 ? A 21 ? A 26 ? 1 A C 21 1_555 A G 26 1_555 A G 22 1_555 A A 25 1_555 -2.117 -1.192 3.166 0.032 1.198 67.695 -1.114 1.901 3.146 1.076 -0.029 67.704 13 AA_C21G22:A25G26_AA A 21 ? A 26 ? A 22 ? A 25 ? #