HEADER HYDROLASE 15-JUN-99 1CQD TITLE THE 2.1 ANGSTROM STRUCTURE OF A CYSTEINE PROTEASE WITH PROLINE TITLE 2 SPECIFICITY FROM GINGER RHIZOME, ZINGIBER OFFICINALE CAVEAT 1CQD FUC G 2 HAS WRONG CHIRALITY AT ATOM C1 FUC H 2 HAS WRONG CAVEAT 2 1CQD CHIRALITY AT ATOM C1 NAG H 3 HAS WRONG CHIRALITY AT ATOM C1 CAVEAT 3 1CQD FUC I 2 HAS WRONG CHIRALITY AT ATOM C1 NAG I 3 HAS WRONG CAVEAT 4 1CQD CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PROTEASE II); COMPND 3 CHAIN: A, B, C, D; COMPND 4 OTHER_DETAILS: TETRATHIONATE ATTACHED TO CYS-27 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZINGIBER OFFICINALE; SOURCE 3 ORGANISM_TAXID: 94328; SOURCE 4 OTHER_DETAILS: PURIFIED FROM GROUND GINGER ROOT KEYWDS CYSTEINE PROTEASE, GLYCOPROTEIN, PROLINE SPECIFICITY, CARBOHYDRATE, KEYWDS 2 PAPAIN FAMILY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.H.CHOI,R.A.LAURSEN,K.N.ALLEN REVDAT 9 09-OCT-24 1CQD 1 REMARK REVDAT 8 27-DEC-23 1CQD 1 HETSYN REVDAT 7 29-JUL-20 1CQD 1 CAVEAT COMPND REMARK HETNAM REVDAT 7 2 1 LINK SITE ATOM REVDAT 6 13-JUL-11 1CQD 1 VERSN REVDAT 5 07-APR-09 1CQD 1 HETNAM REVDAT 4 24-FEB-09 1CQD 1 VERSN REVDAT 3 01-APR-03 1CQD 1 JRNL REVDAT 2 28-JUN-00 1CQD 1 SOURCE REMARK MODRES SITE REVDAT 1 28-SEP-99 1CQD 0 JRNL AUTH K.H.CHOI,R.A.LAURSEN,K.N.ALLEN JRNL TITL THE 2.1 A STRUCTURE OF A CYSTEINE PROTEASE WITH PROLINE JRNL TITL 2 SPECIFICITY FROM GINGER RHIZOME, ZINGIBER OFFICINALE. JRNL REF BIOCHEMISTRY V. 38 11624 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10512617 JRNL DOI 10.1021/BI990651B REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.8 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 48814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4505 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4431 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 506 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6584 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 214 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.060 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.527 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PARAM3.CHO REMARK 3 PARAMETER FILE 3 : TIP3P.PAR REMARK 3 PARAMETER FILE 4 : S2O3.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH3.CHO REMARK 3 TOPOLOGY FILE 3 : TIP3P.TOP REMARK 3 TOPOLOGY FILE 4 : S2O3.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CQD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-99. REMARK 100 THE DEPOSITION ID IS D_1000001196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-97 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SUPPER LONG MIRRORS REMARK 200 OPTICS : SUPPER LONG MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58449 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.19100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: INITIAL MODEL WAS GENERATED FROM PAPAIN, ACTINIDIN AND REMARK 200 PROTEASE OMEGA BY SWISS- MODEL PROTEIN MODELING SERVER REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE BUFFER (PH 5.2) REMARK 280 CONTAINING 0.1 M AMMONIUM SULFATE, 26% POLYETHYLENE GLYCOL REMARK 280 MONOMETHYLETHER 2000, AND 2.5 MM SODIUM TETRATHIONATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.72500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 219 REMARK 465 THR A 220 REMARK 465 ASN A 221 REMARK 465 ASP B 1 REMARK 465 ASP B 2 REMARK 465 GLY B 219 REMARK 465 THR B 220 REMARK 465 ASN B 221 REMARK 465 ASP C 1 REMARK 465 ASP C 2 REMARK 465 GLY C 219 REMARK 465 THR C 220 REMARK 465 ASN C 221 REMARK 465 ASP D 1 REMARK 465 ASP D 2 REMARK 465 GLY D 219 REMARK 465 THR D 220 REMARK 465 ASN D 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 979 O HOH A 980 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR B 60 N ASP B 173 1565 1.96 REMARK 500 O SER B 117 OD2 ASP B 173 2557 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 17 153.32 -46.74 REMARK 500 ALA A 104 74.83 -163.01 REMARK 500 SER A 111 -165.10 -167.35 REMARK 500 ASN A 156 -159.52 -95.27 REMARK 500 PRO B 17 153.51 -46.77 REMARK 500 ALA B 104 74.70 -163.46 REMARK 500 SER B 111 -165.24 -167.34 REMARK 500 PRO C 17 152.85 -46.57 REMARK 500 ALA C 104 74.76 -163.08 REMARK 500 SER C 111 -165.17 -167.39 REMARK 500 PRO D 17 153.32 -46.86 REMARK 500 ALA D 104 74.99 -163.11 REMARK 500 SER D 111 -165.15 -167.48 REMARK 500 ASN D 156 -159.81 -95.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THIOSULFATE IS ATTACHED TO CYS-27 IN ALL FOUR MONOMERS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CAA REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CYS 27 AND HIS 161 ARE THE CATALYTIC DIAD. REMARK 800 REMARK 800 SITE_IDENTIFIER: CAB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CYS 27 AND HIS 161 ARE THE CATALYTIC DIAD. REMARK 800 REMARK 800 SITE_IDENTIFIER: CAC REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CYS 27 AND HIS 161 ARE THE CATALYTIC DIAD. REMARK 800 REMARK 800 SITE_IDENTIFIER: CAD REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CYS 27 AND HIS 161 ARE THE CATALYTIC DIAD. REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE IS TO BE PUBLISHED IN A SEQUENCE DATABASE. DBREF 1CQD A 1 221 UNP P82474 CPGP2_ZINOF 1 221 DBREF 1CQD B 1 221 UNP P82474 CPGP2_ZINOF 1 221 DBREF 1CQD C 1 221 UNP P82474 CPGP2_ZINOF 1 221 DBREF 1CQD D 1 221 UNP P82474 CPGP2_ZINOF 1 221 SEQRES 1 A 221 ASP ASP LEU PRO ASP SER ILE ASP TRP ARG GLU ASN GLY SEQRES 2 A 221 ALA VAL VAL PRO VAL LYS ASN GLN GLY GLY CYS GLY SER SEQRES 3 A 221 CYS TRP ALA PHE SER THR VAL ALA ALA VAL GLU GLY ILE SEQRES 4 A 221 ASN GLN ILE VAL THR GLY ASP LEU ILE SER LEU SER GLU SEQRES 5 A 221 GLN GLN LEU VAL ASP CYS THR THR ALA ASN HIS GLY CYS SEQRES 6 A 221 ARG GLY GLY TRP MET ASN PRO ALA PHE GLN PHE ILE VAL SEQRES 7 A 221 ASN ASN GLY GLY ILE ASN SER GLU GLU THR TYR PRO TYR SEQRES 8 A 221 ARG GLY GLN ASP GLY ILE CYS ASN SER THR VAL ASN ALA SEQRES 9 A 221 PRO VAL VAL SER ILE ASP SER TYR GLU ASN VAL PRO SER SEQRES 10 A 221 HIS ASN GLU GLN SER LEU GLN LYS ALA VAL ALA ASN GLN SEQRES 11 A 221 PRO VAL SER VAL THR MET ASP ALA ALA GLY ARG ASP PHE SEQRES 12 A 221 GLN LEU TYR ARG SER GLY ILE PHE THR GLY SER CYS ASN SEQRES 13 A 221 ILE SER ALA ASN HIS ALA LEU THR VAL VAL GLY TYR GLY SEQRES 14 A 221 THR GLU ASN ASP LYS ASP PHE TRP ILE VAL LYS ASN SER SEQRES 15 A 221 TRP GLY LYS ASN TRP GLY GLU SER GLY TYR ILE ARG ALA SEQRES 16 A 221 GLU ARG ASN ILE GLU ASN PRO ASP GLY LYS CYS GLY ILE SEQRES 17 A 221 THR ARG PHE ALA SER TYR PRO VAL LYS LYS GLY THR ASN SEQRES 1 B 221 ASP ASP LEU PRO ASP SER ILE ASP TRP ARG GLU ASN GLY SEQRES 2 B 221 ALA VAL VAL PRO VAL LYS ASN GLN GLY GLY CYS GLY SER SEQRES 3 B 221 CYS TRP ALA PHE SER THR VAL ALA ALA VAL GLU GLY ILE SEQRES 4 B 221 ASN GLN ILE VAL THR GLY ASP LEU ILE SER LEU SER GLU SEQRES 5 B 221 GLN GLN LEU VAL ASP CYS THR THR ALA ASN HIS GLY CYS SEQRES 6 B 221 ARG GLY GLY TRP MET ASN PRO ALA PHE GLN PHE ILE VAL SEQRES 7 B 221 ASN ASN GLY GLY ILE ASN SER GLU GLU THR TYR PRO TYR SEQRES 8 B 221 ARG GLY GLN ASP GLY ILE CYS ASN SER THR VAL ASN ALA SEQRES 9 B 221 PRO VAL VAL SER ILE ASP SER TYR GLU ASN VAL PRO SER SEQRES 10 B 221 HIS ASN GLU GLN SER LEU GLN LYS ALA VAL ALA ASN GLN SEQRES 11 B 221 PRO VAL SER VAL THR MET ASP ALA ALA GLY ARG ASP PHE SEQRES 12 B 221 GLN LEU TYR ARG SER GLY ILE PHE THR GLY SER CYS ASN SEQRES 13 B 221 ILE SER ALA ASN HIS ALA LEU THR VAL VAL GLY TYR GLY SEQRES 14 B 221 THR GLU ASN ASP LYS ASP PHE TRP ILE VAL LYS ASN SER SEQRES 15 B 221 TRP GLY LYS ASN TRP GLY GLU SER GLY TYR ILE ARG ALA SEQRES 16 B 221 GLU ARG ASN ILE GLU ASN PRO ASP GLY LYS CYS GLY ILE SEQRES 17 B 221 THR ARG PHE ALA SER TYR PRO VAL LYS LYS GLY THR ASN SEQRES 1 C 221 ASP ASP LEU PRO ASP SER ILE ASP TRP ARG GLU ASN GLY SEQRES 2 C 221 ALA VAL VAL PRO VAL LYS ASN GLN GLY GLY CYS GLY SER SEQRES 3 C 221 CYS TRP ALA PHE SER THR VAL ALA ALA VAL GLU GLY ILE SEQRES 4 C 221 ASN GLN ILE VAL THR GLY ASP LEU ILE SER LEU SER GLU SEQRES 5 C 221 GLN GLN LEU VAL ASP CYS THR THR ALA ASN HIS GLY CYS SEQRES 6 C 221 ARG GLY GLY TRP MET ASN PRO ALA PHE GLN PHE ILE VAL SEQRES 7 C 221 ASN ASN GLY GLY ILE ASN SER GLU GLU THR TYR PRO TYR SEQRES 8 C 221 ARG GLY GLN ASP GLY ILE CYS ASN SER THR VAL ASN ALA SEQRES 9 C 221 PRO VAL VAL SER ILE ASP SER TYR GLU ASN VAL PRO SER SEQRES 10 C 221 HIS ASN GLU GLN SER LEU GLN LYS ALA VAL ALA ASN GLN SEQRES 11 C 221 PRO VAL SER VAL THR MET ASP ALA ALA GLY ARG ASP PHE SEQRES 12 C 221 GLN LEU TYR ARG SER GLY ILE PHE THR GLY SER CYS ASN SEQRES 13 C 221 ILE SER ALA ASN HIS ALA LEU THR VAL VAL GLY TYR GLY SEQRES 14 C 221 THR GLU ASN ASP LYS ASP PHE TRP ILE VAL LYS ASN SER SEQRES 15 C 221 TRP GLY LYS ASN TRP GLY GLU SER GLY TYR ILE ARG ALA SEQRES 16 C 221 GLU ARG ASN ILE GLU ASN PRO ASP GLY LYS CYS GLY ILE SEQRES 17 C 221 THR ARG PHE ALA SER TYR PRO VAL LYS LYS GLY THR ASN SEQRES 1 D 221 ASP ASP LEU PRO ASP SER ILE ASP TRP ARG GLU ASN GLY SEQRES 2 D 221 ALA VAL VAL PRO VAL LYS ASN GLN GLY GLY CYS GLY SER SEQRES 3 D 221 CYS TRP ALA PHE SER THR VAL ALA ALA VAL GLU GLY ILE SEQRES 4 D 221 ASN GLN ILE VAL THR GLY ASP LEU ILE SER LEU SER GLU SEQRES 5 D 221 GLN GLN LEU VAL ASP CYS THR THR ALA ASN HIS GLY CYS SEQRES 6 D 221 ARG GLY GLY TRP MET ASN PRO ALA PHE GLN PHE ILE VAL SEQRES 7 D 221 ASN ASN GLY GLY ILE ASN SER GLU GLU THR TYR PRO TYR SEQRES 8 D 221 ARG GLY GLN ASP GLY ILE CYS ASN SER THR VAL ASN ALA SEQRES 9 D 221 PRO VAL VAL SER ILE ASP SER TYR GLU ASN VAL PRO SER SEQRES 10 D 221 HIS ASN GLU GLN SER LEU GLN LYS ALA VAL ALA ASN GLN SEQRES 11 D 221 PRO VAL SER VAL THR MET ASP ALA ALA GLY ARG ASP PHE SEQRES 12 D 221 GLN LEU TYR ARG SER GLY ILE PHE THR GLY SER CYS ASN SEQRES 13 D 221 ILE SER ALA ASN HIS ALA LEU THR VAL VAL GLY TYR GLY SEQRES 14 D 221 THR GLU ASN ASP LYS ASP PHE TRP ILE VAL LYS ASN SER SEQRES 15 D 221 TRP GLY LYS ASN TRP GLY GLU SER GLY TYR ILE ARG ALA SEQRES 16 D 221 GLU ARG ASN ILE GLU ASN PRO ASP GLY LYS CYS GLY ILE SEQRES 17 D 221 THR ARG PHE ALA SER TYR PRO VAL LYS LYS GLY THR ASN MODRES 1CQD ASN A 99 ASN GLYCOSYLATION SITE MODRES 1CQD ASN A 156 ASN GLYCOSYLATION SITE MODRES 1CQD ASN B 99 ASN GLYCOSYLATION SITE MODRES 1CQD ASN B 156 ASN GLYCOSYLATION SITE MODRES 1CQD ASN C 99 ASN GLYCOSYLATION SITE MODRES 1CQD ASN D 99 ASN GLYCOSYLATION SITE HET NAG E 1 14 HET FUL E 2 10 HET NAG E 3 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET FUC G 2 10 HET NAG G 3 14 HET NAG H 1 14 HET FUC H 2 10 HET NAG H 3 14 HET NAG I 1 14 HET FUC I 2 10 HET NAG I 3 14 HET THJ A 800 5 HET NAG B 900 14 HET THJ B 800 5 HET THJ C 800 5 HET THJ D 800 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM THJ THIOSULFATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUL BETA-L-FUCOSE; 6-DEOXY-BETA-L-GALACTOPYRANOSE; L- HETSYN 2 FUL FUCOSE; FUCOSE; 6-DEOXY-BETA-L-GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG 11(C8 H15 N O6) FORMUL 5 FUL C6 H12 O5 FORMUL 7 FUC 3(C6 H12 O5) FORMUL 10 THJ 4(O3 S2 2-) FORMUL 15 HOH *373(H2 O) HELIX 1 1 CYS A 27 THR A 44 1 18 HELIX 2 2 GLU A 52 CYS A 58 1 7 HELIX 3 3 GLY A 64 ARG A 66 5 3 HELIX 4 4 MET A 70 ASN A 80 1 11 HELIX 5 5 GLU A 120 VAL A 127 1 8 HELIX 6 6 ARG A 141 GLN A 144 1 4 HELIX 7 7 LYS A 205 GLY A 207 5 3 HELIX 8 8 CYS B 27 THR B 44 1 18 HELIX 9 9 GLU B 52 CYS B 58 1 7 HELIX 10 10 GLY B 64 ARG B 66 5 3 HELIX 11 11 MET B 70 ASN B 80 1 11 HELIX 12 12 GLU B 120 VAL B 127 1 8 HELIX 13 13 ARG B 141 GLN B 144 1 4 HELIX 14 14 LYS B 205 GLY B 207 5 3 HELIX 15 15 CYS C 27 THR C 44 1 18 HELIX 16 16 GLU C 52 CYS C 58 1 7 HELIX 17 17 GLY C 64 ARG C 66 5 3 HELIX 18 18 MET C 70 ASN C 80 1 11 HELIX 19 19 GLU C 120 VAL C 127 1 8 HELIX 20 20 ARG C 141 GLN C 144 1 4 HELIX 21 21 LYS C 205 GLY C 207 5 3 HELIX 22 22 CYS D 27 THR D 44 1 18 HELIX 23 23 GLU D 52 CYS D 58 1 7 HELIX 24 24 GLY D 64 ARG D 66 5 3 HELIX 25 25 MET D 70 ASN D 80 1 11 HELIX 26 26 GLU D 120 VAL D 127 1 8 HELIX 27 27 ARG D 141 GLN D 144 1 4 HELIX 28 28 LYS D 205 GLY D 207 5 3 SHEET 1 A 2 SER A 111 ASN A 114 0 SHEET 2 A 2 SER A 213 VAL A 216 -1 N VAL A 216 O SER A 111 SHEET 1 B 4 VAL A 132 MET A 136 0 SHEET 2 B 4 HIS A 161 GLU A 171 -1 N VAL A 165 O VAL A 132 SHEET 3 B 4 LYS A 174 LYS A 180 -1 N LYS A 180 O THR A 164 SHEET 4 B 4 TYR A 192 GLU A 196 -1 N ALA A 195 O TRP A 177 SHEET 1 C 2 SER B 111 ASN B 114 0 SHEET 2 C 2 SER B 213 VAL B 216 -1 N VAL B 216 O SER B 111 SHEET 1 D 4 VAL B 132 MET B 136 0 SHEET 2 D 4 HIS B 161 GLU B 171 -1 N VAL B 165 O VAL B 132 SHEET 3 D 4 LYS B 174 LYS B 180 -1 N LYS B 180 O THR B 164 SHEET 4 D 4 TYR B 192 GLU B 196 -1 N ALA B 195 O TRP B 177 SHEET 1 E 2 SER C 111 ASN C 114 0 SHEET 2 E 2 SER C 213 VAL C 216 -1 N VAL C 216 O SER C 111 SHEET 1 F 4 VAL C 132 MET C 136 0 SHEET 2 F 4 HIS C 161 GLU C 171 -1 N VAL C 165 O VAL C 132 SHEET 3 F 4 LYS C 174 LYS C 180 -1 N LYS C 180 O THR C 164 SHEET 4 F 4 TYR C 192 GLU C 196 -1 N ALA C 195 O TRP C 177 SHEET 1 G 2 SER D 111 ASN D 114 0 SHEET 2 G 2 SER D 213 VAL D 216 -1 N VAL D 216 O SER D 111 SHEET 1 H 4 VAL D 132 MET D 136 0 SHEET 2 H 4 HIS D 161 GLU D 171 -1 N VAL D 165 O VAL D 132 SHEET 3 H 4 LYS D 174 LYS D 180 -1 N LYS D 180 O THR D 164 SHEET 4 H 4 TYR D 192 GLU D 196 -1 N ALA D 195 O TRP D 177 SSBOND 1 CYS A 24 CYS A 65 1555 1555 2.03 SSBOND 2 CYS A 58 CYS A 98 1555 1555 2.03 SSBOND 3 CYS A 155 CYS A 206 1555 1555 2.03 SSBOND 4 CYS B 24 CYS B 65 1555 1555 2.03 SSBOND 5 CYS B 58 CYS B 98 1555 1555 2.03 SSBOND 6 CYS B 155 CYS B 206 1555 1555 2.03 SSBOND 7 CYS C 24 CYS C 65 1555 1555 2.03 SSBOND 8 CYS C 58 CYS C 98 1555 1555 2.03 SSBOND 9 CYS C 155 CYS C 206 1555 1555 2.04 SSBOND 10 CYS D 24 CYS D 65 1555 1555 2.03 SSBOND 11 CYS D 58 CYS D 98 1555 1555 2.03 SSBOND 12 CYS D 155 CYS D 206 1555 1555 2.03 LINK SG CYS A 27 S2 THJ A 800 1555 1555 2.02 LINK ND2 ASN A 99 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN A 156 C1 NAG E 1 1555 1555 1.46 LINK SG CYS B 27 S2 THJ B 800 1555 1555 2.00 LINK ND2 ASN B 99 C1 NAG B 900 1555 1555 1.45 LINK ND2 ASN B 156 C1 NAG G 1 1555 1555 1.45 LINK SG CYS C 27 S2 THJ C 800 1555 1555 1.99 LINK ND2 ASN C 99 C1 NAG H 1 1555 1555 1.46 LINK SG CYS D 27 S2 THJ D 800 1555 1555 2.01 LINK ND2 ASN D 99 C1 NAG I 1 1555 1555 1.44 LINK O3 NAG E 1 C1 FUL E 2 1555 1555 1.41 LINK O4 NAG E 1 C1 NAG E 3 1555 1555 1.40 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.39 LINK O3 NAG G 1 C1 FUC G 2 1555 1555 1.41 LINK O4 NAG G 1 C1 NAG G 3 1555 1555 1.40 LINK O3 NAG H 1 C1 FUC H 2 1555 1555 1.42 LINK O4 NAG H 1 C1 NAG H 3 1555 1555 1.40 LINK O3 NAG I 1 C1 FUC I 2 1555 1555 1.40 LINK O4 NAG I 1 C1 NAG I 3 1555 1555 1.39 SITE 1 CAA 2 CYS A 27 HIS A 161 SITE 1 CAB 2 CYS B 27 HIS B 161 SITE 1 CAC 2 CYS C 27 HIS C 161 SITE 1 CAD 2 CYS D 27 HIS D 161 CRYST1 93.980 45.450 110.040 90.00 105.03 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010640 0.000000 0.002857 0.00000 SCALE2 0.000000 0.022002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009409 0.00000 MTRIX1 1 -0.999590 0.028570 0.002970 3.36429 1 MTRIX2 1 0.028560 0.999590 -0.001080 1.04461 1 MTRIX3 1 -0.003000 -0.000990 -0.999990 159.70383 1 MTRIX1 2 -0.787730 0.014110 -0.615860 76.65181 1 MTRIX2 2 0.019110 0.999820 -0.001550 -2.54158 1 MTRIX3 2 0.615720 -0.012990 -0.787860 128.41476 1 MTRIX1 3 0.784460 0.001460 0.620180 -73.05138 1 MTRIX2 3 -0.007440 0.999950 0.007050 -2.73918 1 MTRIX3 3 -0.620130 -0.010140 0.784430 32.10210 1