HEADER GENE REGULATION/DNA 11-AUG-99 1CQT TITLE CRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE, TITLE 2 THE OCT-1 POU DOMAIN, AND AN OCTAMER ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)- COMPND 3 3'); COMPND 4 CHAIN: M, O; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)- COMPND 8 3'); COMPND 9 CHAIN: N, P; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1; COMPND 13 CHAIN: A, B; COMPND 14 FRAGMENT: OCT-1 POU DOMAIN, RESIDUES 278-439; COMPND 15 SYNONYM: OCTAMER-BINDING TRANSCRIPTION FACTOR 1, OTF-1, NF-A1; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: POU DOMAIN, CLASS 2, ASSOCIATING FACTOR 1; COMPND 19 CHAIN: I, J; COMPND 20 FRAGMENT: OCA-B PEPTIDE, RESIDUES 1-44; COMPND 21 SYNONYM: OCT-BINDING FACTOR, OCA-B, OBF-1, BOB1; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: SEE REFERENCE 1; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 CELL: B-CELL; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS POU DOMAIN, PROTEIN-DNA COMPLEX, OCT1, OCA-B, PROTEIN-DNA INTERFACE, KEYWDS 2 GENE REGULATION/DNA, GENE REGULATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.I.CHASMAN,K.CEPEK,P.A.SHARP,C.O.PABO REVDAT 4 07-FEB-24 1CQT 1 SEQADV REVDAT 3 24-FEB-09 1CQT 1 VERSN REVDAT 2 01-APR-03 1CQT 1 JRNL REVDAT 1 15-NOV-99 1CQT 0 JRNL AUTH D.CHASMAN,K.CEPEK,P.A.SHARP,C.O.PABO JRNL TITL CRYSTAL STRUCTURE OF AN OCA-B PEPTIDE BOUND TO AN OCT-1 POU JRNL TITL 2 DOMAIN/OCTAMER DNA COMPLEX: SPECIFIC RECOGNITION OF A JRNL TITL 3 PROTEIN-DNA INTERFACE. JRNL REF GENES DEV. V. 13 2650 1999 JRNL REFN ISSN 0890-9369 JRNL PMID 10541551 JRNL DOI 10.1101/GAD.13.20.2650 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.D.KLEMM,M.A.ROULD,R.AURORA,W.HERR,C.O.PABO REMARK 1 TITL CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN REMARK 1 TITL 2 OCTAMER SITE: DNA RECOGNITION WITH TETHERED DNA-BINDING REMARK 1 TITL 3 MODULES REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 77 21 1994 REMARK 1 REFN ISSN 0092-8674 REMARK 1 DOI 10.1016/0092-8674(94)90231-3 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 11708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.326 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1139 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2466 REMARK 3 NUCLEIC ACID ATOMS : 1183 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-97 REMARK 200 TEMPERATURE (KELVIN) : 103.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9669 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11803 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.89 REMARK 200 R MERGE FOR SHELL (I) : 0.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.50, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.32550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.86100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.86100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.16275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.86100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.86100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 114.48825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.86100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.86100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 38.16275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.86100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.86100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 114.48825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.32550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, N, A, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, P, B, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT O 701 REMARK 465 DA P 716 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 ARG A 0 REMARK 465 GLU A 1 REMARK 465 ASN A 77 REMARK 465 LEU A 78 REMARK 465 SER A 79 REMARK 465 SER A 80 REMARK 465 ASP A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 LEU A 84 REMARK 465 SER A 85 REMARK 465 SER A 86 REMARK 465 PRO A 87 REMARK 465 SER A 88 REMARK 465 ALA A 89 REMARK 465 LEU A 90 REMARK 465 ASN A 91 REMARK 465 SER A 92 REMARK 465 PRO A 93 REMARK 465 GLY A 94 REMARK 465 ILE A 95 REMARK 465 GLU A 96 REMARK 465 GLY A 97 REMARK 465 LEU A 98 REMARK 465 SER A 99 REMARK 465 ARG A 100 REMARK 465 ARG A 101 REMARK 465 GLY B 498 REMARK 465 SER B 499 REMARK 465 ARG B 500 REMARK 465 GLU B 501 REMARK 465 GLU B 502 REMARK 465 PRO B 503 REMARK 465 SER B 504 REMARK 465 GLY B 539 REMARK 465 ASN B 577 REMARK 465 LEU B 578 REMARK 465 SER B 579 REMARK 465 SER B 580 REMARK 465 ASP B 581 REMARK 465 SER B 582 REMARK 465 SER B 583 REMARK 465 LEU B 584 REMARK 465 SER B 585 REMARK 465 SER B 586 REMARK 465 PRO B 587 REMARK 465 SER B 588 REMARK 465 ALA B 589 REMARK 465 LEU B 590 REMARK 465 ASN B 591 REMARK 465 SER B 592 REMARK 465 PRO B 593 REMARK 465 GLY B 594 REMARK 465 ILE B 595 REMARK 465 GLU B 596 REMARK 465 GLY B 597 REMARK 465 LEU B 598 REMARK 465 SER B 599 REMARK 465 ARG B 600 REMARK 465 ARG B 601 REMARK 465 PRO B 626 REMARK 465 MET I 285 REMARK 465 LEU I 286 REMARK 465 TRP I 287 REMARK 465 GLN I 288 REMARK 465 LYS I 289 REMARK 465 PRO I 290 REMARK 465 THR I 291 REMARK 465 ALA I 292 REMARK 465 PRO I 293 REMARK 465 GLU I 294 REMARK 465 GLN I 295 REMARK 465 ALA I 296 REMARK 465 PRO I 297 REMARK 465 ALA I 298 REMARK 465 PRO I 299 REMARK 465 HIS I 322 REMARK 465 ALA I 323 REMARK 465 SER I 324 REMARK 465 SER I 325 REMARK 465 GLY I 326 REMARK 465 ALA I 327 REMARK 465 ALA I 328 REMARK 465 MET J 785 REMARK 465 LEU J 786 REMARK 465 TRP J 787 REMARK 465 GLN J 788 REMARK 465 LYS J 789 REMARK 465 PRO J 790 REMARK 465 THR J 791 REMARK 465 ALA J 792 REMARK 465 PRO J 793 REMARK 465 GLU J 794 REMARK 465 GLN J 795 REMARK 465 ALA J 796 REMARK 465 PRO J 797 REMARK 465 ALA J 798 REMARK 465 PRO J 799 REMARK 465 ALA J 823 REMARK 465 SER J 824 REMARK 465 SER J 825 REMARK 465 GLY J 826 REMARK 465 ALA J 827 REMARK 465 ALA J 828 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 GLN A 18 CG CD OE1 NE2 REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 ASN A 40 CG OD1 ND2 REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 SER A 128 OG REMARK 470 LYS B 522 CG CD CE NZ REMARK 470 LYS B 536 CG CD CE NZ REMARK 470 LYS B 558 CG CD CE NZ REMARK 470 ILE B 612 CG1 CG2 CD1 REMARK 470 LYS B 618 CG CD CE NZ REMARK 470 LYS B 625 CG CD CE NZ REMARK 470 GLU B 629 CG CD OE1 OE2 REMARK 470 ILE B 631 CG1 CG2 CD1 REMARK 470 PRO B 661 CG CD REMARK 470 ARG I 301 CG CD NE CZ NH1 NH2 REMARK 470 ARG J 801 CG CD NE CZ NH1 NH2 REMARK 470 HIS J 822 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 661 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO I 302 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 4 177.31 -57.30 REMARK 500 SER A 43 175.42 -54.10 REMARK 500 ASN A 72 -76.67 -56.54 REMARK 500 ALA A 74 -140.74 -80.82 REMARK 500 ILE A 159 -77.32 -65.31 REMARK 500 LEU B 506 -71.01 -102.54 REMARK 500 THR B 526 -151.46 -72.57 REMARK 500 LEU B 537 15.40 -148.45 REMARK 500 THR B 545 -73.03 -49.76 REMARK 500 ALA B 574 88.48 -58.92 REMARK 500 LYS B 603 101.65 -46.43 REMARK 500 ASN B 623 135.94 179.25 REMARK 500 MET B 640 -84.11 -83.06 REMARK 500 TYR I 303 61.04 80.57 REMARK 500 LYS I 319 36.91 -81.70 REMARK 500 PRO J 802 1.00 -64.62 REMARK 500 TYR J 803 83.55 67.71 REMARK 500 GLU J 810 71.01 68.13 REMARK 500 REMARK 500 REMARK: NULL DBREF 1CQT A -2 160 UNP P14859 PO2F1_HUMAN 277 439 DBREF 1CQT B 498 661 UNP P14859 PO2F1_HUMAN 277 439 DBREF 1CQT I 285 328 UNP Q16633 OBF1_HUMAN 1 44 DBREF 1CQT J 785 828 UNP Q16633 OBF1_HUMAN 1 44 DBREF 1CQT M 201 215 PDB 1CQT 1CQT 201 215 DBREF 1CQT N 216 230 PDB 1CQT 1CQT 216 230 DBREF 1CQT O 701 715 PDB 1CQT 1CQT 701 715 DBREF 1CQT P 716 730 PDB 1CQT 1CQT 716 730 SEQADV 1CQT GLY A -2 UNP P14859 PRO 277 CONFLICT SEQADV 1CQT ARG A 0 UNP P14859 LEU 279 CONFLICT SEQADV 1CQT GLY B 498 UNP P14859 PRO 277 CONFLICT SEQADV 1CQT ARG B 500 UNP P14859 LEU 279 CONFLICT SEQRES 1 M 15 DT DG DT DA DT DG DC DA DA DA DT DA DA SEQRES 2 M 15 DG DG SEQRES 1 N 15 DA DC DC DT DT DA DT DT DT DG DC DA DT SEQRES 2 N 15 DA DC SEQRES 1 O 15 DT DG DT DA DT DG DC DA DA DA DT DA DA SEQRES 2 O 15 DG DG SEQRES 1 P 15 DA DC DC DT DT DA DT DT DT DG DC DA DT SEQRES 2 P 15 DA DC SEQRES 1 A 163 GLY SER ARG GLU GLU PRO SER ASP LEU GLU GLU LEU GLU SEQRES 2 A 163 GLN PHE ALA LYS THR PHE LYS GLN ARG ARG ILE LYS LEU SEQRES 3 A 163 GLY PHE THR GLN GLY ASP VAL GLY LEU ALA MET GLY LYS SEQRES 4 A 163 LEU TYR GLY ASN ASP PHE SER GLN THR THR ILE SER ARG SEQRES 5 A 163 PHE GLU ALA LEU ASN LEU SER PHE LYS ASN MET CYS LYS SEQRES 6 A 163 LEU LYS PRO LEU LEU GLU LYS TRP LEU ASN ASP ALA GLU SEQRES 7 A 163 ASN LEU SER SER ASP SER SER LEU SER SER PRO SER ALA SEQRES 8 A 163 LEU ASN SER PRO GLY ILE GLU GLY LEU SER ARG ARG ARG SEQRES 9 A 163 LYS LYS ARG THR SER ILE GLU THR ASN ILE ARG VAL ALA SEQRES 10 A 163 LEU GLU LYS SER PHE LEU GLU ASN GLN LYS PRO THR SER SEQRES 11 A 163 GLU GLU ILE THR MET ILE ALA ASP GLN LEU ASN MET GLU SEQRES 12 A 163 LYS GLU VAL ILE ARG VAL TRP PHE CYS ASN ARG ARG GLN SEQRES 13 A 163 LYS GLU LYS ARG ILE ASN PRO SEQRES 1 B 163 GLY SER ARG GLU GLU PRO SER ASP LEU GLU GLU LEU GLU SEQRES 2 B 163 GLN PHE ALA LYS THR PHE LYS GLN ARG ARG ILE LYS LEU SEQRES 3 B 163 GLY PHE THR GLN GLY ASP VAL GLY LEU ALA MET GLY LYS SEQRES 4 B 163 LEU TYR GLY ASN ASP PHE SER GLN THR THR ILE SER ARG SEQRES 5 B 163 PHE GLU ALA LEU ASN LEU SER PHE LYS ASN MET CYS LYS SEQRES 6 B 163 LEU LYS PRO LEU LEU GLU LYS TRP LEU ASN ASP ALA GLU SEQRES 7 B 163 ASN LEU SER SER ASP SER SER LEU SER SER PRO SER ALA SEQRES 8 B 163 LEU ASN SER PRO GLY ILE GLU GLY LEU SER ARG ARG ARG SEQRES 9 B 163 LYS LYS ARG THR SER ILE GLU THR ASN ILE ARG VAL ALA SEQRES 10 B 163 LEU GLU LYS SER PHE LEU GLU ASN GLN LYS PRO THR SER SEQRES 11 B 163 GLU GLU ILE THR MET ILE ALA ASP GLN LEU ASN MET GLU SEQRES 12 B 163 LYS GLU VAL ILE ARG VAL TRP PHE CYS ASN ARG ARG GLN SEQRES 13 B 163 LYS GLU LYS ARG ILE ASN PRO SEQRES 1 I 44 MET LEU TRP GLN LYS PRO THR ALA PRO GLU GLN ALA PRO SEQRES 2 I 44 ALA PRO ALA ARG PRO TYR GLN GLY VAL ARG VAL LYS GLU SEQRES 3 I 44 PRO VAL LYS GLU LEU LEU ARG ARG LYS ARG GLY HIS ALA SEQRES 4 I 44 SER SER GLY ALA ALA SEQRES 1 J 44 MET LEU TRP GLN LYS PRO THR ALA PRO GLU GLN ALA PRO SEQRES 2 J 44 ALA PRO ALA ARG PRO TYR GLN GLY VAL ARG VAL LYS GLU SEQRES 3 J 44 PRO VAL LYS GLU LEU LEU ARG ARG LYS ARG GLY HIS ALA SEQRES 4 J 44 SER SER GLY ALA ALA HELIX 1 1 ASP A 5 LEU A 23 1 19 HELIX 2 2 THR A 26 MET A 34 1 9 HELIX 3 3 MET A 34 GLY A 39 1 6 HELIX 4 4 SER A 43 ALA A 52 1 10 HELIX 5 5 SER A 56 LYS A 62 1 7 HELIX 6 6 LEU A 63 ASP A 73 1 11 HELIX 7 7 GLU A 109 LEU A 121 1 13 HELIX 8 8 THR A 127 ASP A 136 1 10 HELIX 9 9 GLN A 137 ASN A 139 5 3 HELIX 10 10 GLU A 141 ASN A 160 1 20 HELIX 11 12 GLU B 507 LEU B 523 1 17 HELIX 12 13 GLN B 527 MET B 534 1 8 HELIX 13 14 SER B 543 LEU B 553 1 11 HELIX 14 15 SER B 556 ALA B 574 1 19 HELIX 15 16 GLU B 609 LEU B 621 1 13 HELIX 16 17 LYS B 642 ASN B 660 1 19 HELIX 17 11 PRO I 311 LYS I 319 1 9 HELIX 18 18 PRO J 811 LYS J 819 1 9 CRYST1 93.722 93.722 152.651 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006551 0.00000