HEADER HYDROLASE 20-AUG-99 1CU1 TITLE CRYSTAL STRUCTURE OF AN ENZYME COMPLEX FROM HEPATITIS C VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PROTEASE/HELICASE NS3); COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.21.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_TAXID: 11103; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HEPATITIS C VIRUS, BIFUNCTIONAL, PROTEASE-HELICASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.YAO,P.C.WEBER REVDAT 4 07-FEB-24 1CU1 1 REMARK LINK REVDAT 3 23-AUG-17 1CU1 1 SOURCE REVDAT 2 24-FEB-09 1CU1 1 VERSN REVDAT 1 23-AUG-00 1CU1 0 JRNL AUTH N.YAO,P.REICHERT,S.S.TAREMI,W.W.PROSISE,P.C.WEBER JRNL TITL MOLECULAR VIEWS OF VIRAL POLYPROTEIN PROCESSING REVEALED BY JRNL TITL 2 THE CRYSTAL STRUCTURE OF THE HEPATITIS C VIRUS BIFUNCTIONAL JRNL TITL 3 PROTEASE-HELICASE. JRNL REF STRUCTURE FOLD.DES. V. 7 1353 1999 JRNL REFN ISSN 0969-2126 JRNL PMID 10574797 JRNL DOI 10.1016/S0969-2126(00)80025-8 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 98.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 50404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1003 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9614 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.670 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50441 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.68000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.68000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 401 N ILE A 403 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 783 O HOH B 1838 4567 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 245 C HIS A 246 N 0.228 REMARK 500 VAL B1183 C PHE B1184 N -0.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 246 C - N - CA ANGL. DEV. = -18.5 DEGREES REMARK 500 PRO A 250 O - C - N ANGL. DEV. = -18.7 DEGREES REMARK 500 PRO A 520 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 ASN A 556 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG B1092 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 PHE B1184 C - N - CA ANGL. DEV. = 22.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 156.51 -48.61 REMARK 500 THR A 38 -162.93 -102.20 REMARK 500 THR A 40 -18.84 -140.39 REMARK 500 SER A 122 15.38 -140.23 REMARK 500 ARG A 155 -14.99 -142.80 REMARK 500 ASN A 187 21.23 -140.91 REMARK 500 THR A 212 -70.59 -123.08 REMARK 500 ALA A 220 -5.35 -54.29 REMARK 500 ALA A 245 -30.10 -136.68 REMARK 500 PRO A 250 -177.74 -63.07 REMARK 500 LYS A 352 -161.46 -119.59 REMARK 500 ILE A 356 -24.76 -37.33 REMARK 500 VAL A 397 89.14 -55.37 REMARK 500 THR A 402 13.29 -49.45 REMARK 500 ILE A 403 18.27 49.78 REMARK 500 ASP A 405 134.26 -32.63 REMARK 500 THR A 443 -86.48 -125.96 REMARK 500 GLU A 480 121.32 173.83 REMARK 500 GLU A 503 40.83 38.52 REMARK 500 ALA B1039 -24.20 78.96 REMARK 500 SER B1093 176.09 77.30 REMARK 500 THR B1098 18.20 -142.09 REMARK 500 SER B1122 38.47 -142.47 REMARK 500 ARG B1155 -50.98 -123.92 REMARK 500 PHE B1184 -3.84 -152.48 REMARK 500 THR B1185 105.84 -11.12 REMARK 500 PRO B1190 105.94 -51.36 REMARK 500 THR B1212 -64.37 -130.63 REMARK 500 HIS B1246 13.05 -146.01 REMARK 500 SER B1342 -167.40 -100.58 REMARK 500 ASN B1387 93.56 -63.59 REMARK 500 THR B1443 -86.00 -120.95 REMARK 500 GLU B1480 122.54 178.52 REMARK 500 ARG B1570 48.42 -76.36 REMARK 500 ALA B1571 17.18 173.42 REMARK 500 GLN B1572 12.53 45.12 REMARK 500 SER B1577 -165.03 -167.63 REMARK 500 MET B1581 -38.09 -39.50 REMARK 500 CYS B1584 0.83 -52.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL B 1183 PHE B 1184 147.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 105 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 250 -28.78 REMARK 500 GLY B1084 -15.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 999 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 97 SG REMARK 620 2 CYS A 99 SG 100.2 REMARK 620 3 CYS A 145 SG 111.4 114.1 REMARK 620 4 HOH A 998 O 107.1 113.9 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1999 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B1097 SG REMARK 620 2 CYS B1099 SG 91.3 REMARK 620 3 CYS B1145 SG 107.1 112.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1800 DBREF 1CU1 A 705 716 UNP P26663 POLG_HCVBK 1678 1689 DBREF 1CU1 A 3 631 UNP P26663 POLG_HCVBK 1029 1657 DBREF 1CU1 B 1705 1716 UNP P26663 POLG_HCVBK 1678 1689 DBREF 1CU1 B 1003 1631 UNP P26663 POLG_HCVBK 1029 1657 SEQRES 1 A 645 GLY SER VAL VAL ILE VAL GLY ARG ILE ILE LEU SER GLY SEQRES 2 A 645 SER GLY SER ILE THR ALA TYR SER GLN GLN THR ARG GLY SEQRES 3 A 645 LEU LEU GLY CYS ILE ILE THR SER LEU THR GLY ARG ASP SEQRES 4 A 645 LYS ASN GLN VAL GLU GLY GLU VAL GLN VAL VAL SER THR SEQRES 5 A 645 ALA THR GLN SER PHE LEU ALA THR CYS VAL ASN GLY VAL SEQRES 6 A 645 CYS TRP THR VAL TYR HIS GLY ALA GLY SER LYS THR LEU SEQRES 7 A 645 ALA GLY PRO LYS GLY PRO ILE THR GLN MET TYR THR ASN SEQRES 8 A 645 VAL ASP GLN ASP LEU VAL GLY TRP GLN ALA PRO PRO GLY SEQRES 9 A 645 ALA ARG SER LEU THR PRO CYS THR CYS GLY SER SER ASP SEQRES 10 A 645 LEU TYR LEU VAL THR ARG HIS ALA ASP VAL ILE PRO VAL SEQRES 11 A 645 ARG ARG ARG GLY ASP SER ARG GLY SER LEU LEU SER PRO SEQRES 12 A 645 ARG PRO VAL SER TYR LEU LYS GLY SER SER GLY GLY PRO SEQRES 13 A 645 LEU LEU CYS PRO SER GLY HIS ALA VAL GLY ILE PHE ARG SEQRES 14 A 645 ALA ALA VAL CYS THR ARG GLY VAL ALA LYS ALA VAL ASP SEQRES 15 A 645 PHE VAL PRO VAL GLU SER MET GLU THR THR MET ARG SER SEQRES 16 A 645 PRO VAL PHE THR ASP ASN SER SER PRO PRO ALA VAL PRO SEQRES 17 A 645 GLN SER PHE GLN VAL ALA HIS LEU HIS ALA PRO THR GLY SEQRES 18 A 645 SER GLY LYS SER THR LYS VAL PRO ALA ALA TYR ALA ALA SEQRES 19 A 645 GLN GLY TYR LYS VAL LEU VAL LEU ASN PRO SER VAL ALA SEQRES 20 A 645 ALA THR LEU GLY PHE GLY ALA TYR MET SER LYS ALA HIS SEQRES 21 A 645 GLY ILE ASP PRO ASN ILE ARG THR GLY VAL ARG THR ILE SEQRES 22 A 645 THR THR GLY ALA PRO VAL THR TYR SER THR TYR GLY LYS SEQRES 23 A 645 PHE LEU ALA ASP GLY GLY CYS SER GLY GLY ALA TYR ASP SEQRES 24 A 645 ILE ILE ILE CYS ASP GLU CYS HIS SER THR ASP SER THR SEQRES 25 A 645 THR ILE LEU GLY ILE GLY THR VAL LEU ASP GLN ALA GLU SEQRES 26 A 645 THR ALA GLY ALA ARG LEU VAL VAL LEU ALA THR ALA THR SEQRES 27 A 645 PRO PRO GLY SER VAL THR VAL PRO HIS PRO ASN ILE GLU SEQRES 28 A 645 GLU VAL ALA LEU SER ASN THR GLY GLU ILE PRO PHE TYR SEQRES 29 A 645 GLY LYS ALA ILE PRO ILE GLU ALA ILE ARG GLY GLY ARG SEQRES 30 A 645 HIS LEU ILE PHE CYS HIS SER LYS LYS LYS CYS ASP GLU SEQRES 31 A 645 LEU ALA ALA LYS LEU SER GLY LEU GLY ILE ASN ALA VAL SEQRES 32 A 645 ALA TYR TYR ARG GLY LEU ASP VAL SER VAL ILE PRO THR SEQRES 33 A 645 ILE GLY ASP VAL VAL VAL VAL ALA THR ASP ALA LEU MET SEQRES 34 A 645 THR GLY TYR THR GLY ASP PHE ASP SER VAL ILE ASP CYS SEQRES 35 A 645 ASN THR CYS VAL THR GLN THR VAL ASP PHE SER LEU ASP SEQRES 36 A 645 PRO THR PHE THR ILE GLU THR THR THR VAL PRO GLN ASP SEQRES 37 A 645 ALA VAL SER ARG SER GLN ARG ARG GLY ARG THR GLY ARG SEQRES 38 A 645 GLY ARG ARG GLY ILE TYR ARG PHE VAL THR PRO GLY GLU SEQRES 39 A 645 ARG PRO SER GLY MET PHE ASP SER SER VAL LEU CYS GLU SEQRES 40 A 645 CYS TYR ASP ALA GLY CYS ALA TRP TYR GLU LEU THR PRO SEQRES 41 A 645 ALA GLU THR SER VAL ARG LEU ARG ALA TYR LEU ASN THR SEQRES 42 A 645 PRO GLY LEU PRO VAL CYS GLN ASP HIS LEU GLU PHE TRP SEQRES 43 A 645 GLU SER VAL PHE THR GLY LEU THR HIS ILE ASP ALA HIS SEQRES 44 A 645 PHE LEU SER GLN THR LYS GLN ALA GLY ASP ASN PHE PRO SEQRES 45 A 645 TYR LEU VAL ALA TYR GLN ALA THR VAL CYS ALA ARG ALA SEQRES 46 A 645 GLN ALA PRO PRO PRO SER TRP ASP GLN MET TRP LYS CYS SEQRES 47 A 645 LEU ILE ARG LEU LYS PRO THR LEU HIS GLY PRO THR PRO SEQRES 48 A 645 LEU LEU TYR ARG LEU GLY ALA VAL GLN ASN GLU VAL THR SEQRES 49 A 645 LEU THR HIS PRO ILE THR LYS TYR ILE MET ALA CYS MET SEQRES 50 A 645 SER ALA ASP LEU GLU VAL VAL THR SEQRES 1 B 645 GLY SER VAL VAL ILE VAL GLY ARG ILE ILE LEU SER GLY SEQRES 2 B 645 SER GLY SER ILE THR ALA TYR SER GLN GLN THR ARG GLY SEQRES 3 B 645 LEU LEU GLY CYS ILE ILE THR SER LEU THR GLY ARG ASP SEQRES 4 B 645 LYS ASN GLN VAL GLU GLY GLU VAL GLN VAL VAL SER THR SEQRES 5 B 645 ALA THR GLN SER PHE LEU ALA THR CYS VAL ASN GLY VAL SEQRES 6 B 645 CYS TRP THR VAL TYR HIS GLY ALA GLY SER LYS THR LEU SEQRES 7 B 645 ALA GLY PRO LYS GLY PRO ILE THR GLN MET TYR THR ASN SEQRES 8 B 645 VAL ASP GLN ASP LEU VAL GLY TRP GLN ALA PRO PRO GLY SEQRES 9 B 645 ALA ARG SER LEU THR PRO CYS THR CYS GLY SER SER ASP SEQRES 10 B 645 LEU TYR LEU VAL THR ARG HIS ALA ASP VAL ILE PRO VAL SEQRES 11 B 645 ARG ARG ARG GLY ASP SER ARG GLY SER LEU LEU SER PRO SEQRES 12 B 645 ARG PRO VAL SER TYR LEU LYS GLY SER SER GLY GLY PRO SEQRES 13 B 645 LEU LEU CYS PRO SER GLY HIS ALA VAL GLY ILE PHE ARG SEQRES 14 B 645 ALA ALA VAL CYS THR ARG GLY VAL ALA LYS ALA VAL ASP SEQRES 15 B 645 PHE VAL PRO VAL GLU SER MET GLU THR THR MET ARG SER SEQRES 16 B 645 PRO VAL PHE THR ASP ASN SER SER PRO PRO ALA VAL PRO SEQRES 17 B 645 GLN SER PHE GLN VAL ALA HIS LEU HIS ALA PRO THR GLY SEQRES 18 B 645 SER GLY LYS SER THR LYS VAL PRO ALA ALA TYR ALA ALA SEQRES 19 B 645 GLN GLY TYR LYS VAL LEU VAL LEU ASN PRO SER VAL ALA SEQRES 20 B 645 ALA THR LEU GLY PHE GLY ALA TYR MET SER LYS ALA HIS SEQRES 21 B 645 GLY ILE ASP PRO ASN ILE ARG THR GLY VAL ARG THR ILE SEQRES 22 B 645 THR THR GLY ALA PRO VAL THR TYR SER THR TYR GLY LYS SEQRES 23 B 645 PHE LEU ALA ASP GLY GLY CYS SER GLY GLY ALA TYR ASP SEQRES 24 B 645 ILE ILE ILE CYS ASP GLU CYS HIS SER THR ASP SER THR SEQRES 25 B 645 THR ILE LEU GLY ILE GLY THR VAL LEU ASP GLN ALA GLU SEQRES 26 B 645 THR ALA GLY ALA ARG LEU VAL VAL LEU ALA THR ALA THR SEQRES 27 B 645 PRO PRO GLY SER VAL THR VAL PRO HIS PRO ASN ILE GLU SEQRES 28 B 645 GLU VAL ALA LEU SER ASN THR GLY GLU ILE PRO PHE TYR SEQRES 29 B 645 GLY LYS ALA ILE PRO ILE GLU ALA ILE ARG GLY GLY ARG SEQRES 30 B 645 HIS LEU ILE PHE CYS HIS SER LYS LYS LYS CYS ASP GLU SEQRES 31 B 645 LEU ALA ALA LYS LEU SER GLY LEU GLY ILE ASN ALA VAL SEQRES 32 B 645 ALA TYR TYR ARG GLY LEU ASP VAL SER VAL ILE PRO THR SEQRES 33 B 645 ILE GLY ASP VAL VAL VAL VAL ALA THR ASP ALA LEU MET SEQRES 34 B 645 THR GLY TYR THR GLY ASP PHE ASP SER VAL ILE ASP CYS SEQRES 35 B 645 ASN THR CYS VAL THR GLN THR VAL ASP PHE SER LEU ASP SEQRES 36 B 645 PRO THR PHE THR ILE GLU THR THR THR VAL PRO GLN ASP SEQRES 37 B 645 ALA VAL SER ARG SER GLN ARG ARG GLY ARG THR GLY ARG SEQRES 38 B 645 GLY ARG ARG GLY ILE TYR ARG PHE VAL THR PRO GLY GLU SEQRES 39 B 645 ARG PRO SER GLY MET PHE ASP SER SER VAL LEU CYS GLU SEQRES 40 B 645 CYS TYR ASP ALA GLY CYS ALA TRP TYR GLU LEU THR PRO SEQRES 41 B 645 ALA GLU THR SER VAL ARG LEU ARG ALA TYR LEU ASN THR SEQRES 42 B 645 PRO GLY LEU PRO VAL CYS GLN ASP HIS LEU GLU PHE TRP SEQRES 43 B 645 GLU SER VAL PHE THR GLY LEU THR HIS ILE ASP ALA HIS SEQRES 44 B 645 PHE LEU SER GLN THR LYS GLN ALA GLY ASP ASN PHE PRO SEQRES 45 B 645 TYR LEU VAL ALA TYR GLN ALA THR VAL CYS ALA ARG ALA SEQRES 46 B 645 GLN ALA PRO PRO PRO SER TRP ASP GLN MET TRP LYS CYS SEQRES 47 B 645 LEU ILE ARG LEU LYS PRO THR LEU HIS GLY PRO THR PRO SEQRES 48 B 645 LEU LEU TYR ARG LEU GLY ALA VAL GLN ASN GLU VAL THR SEQRES 49 B 645 LEU THR HIS PRO ILE THR LYS TYR ILE MET ALA CYS MET SEQRES 50 B 645 SER ALA ASP LEU GLU VAL VAL THR HET ZN A 999 1 HET PO4 A 800 5 HET ZN B1999 1 HET PO4 B1800 5 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 PO4 2(O4 P 3-) FORMUL 7 HOH *268(H2 O) HELIX 1 1 GLY A 12 GLY A 23 1 12 HELIX 2 2 TYR A 56 GLY A 60 1 5 HELIX 3 3 SER A 133 LEU A 135 5 3 HELIX 4 4 VAL A 172 SER A 181 1 10 HELIX 5 5 THR A 212 ALA A 220 1 9 HELIX 6 6 SER A 231 HIS A 246 1 16 HELIX 7 7 TYR A 270 GLY A 277 1 8 HELIX 8 8 ASP A 296 ALA A 310 1 15 HELIX 9 9 PRO A 355 ILE A 359 5 5 HELIX 10 10 LYS A 371 LEU A 384 1 14 HELIX 11 11 ALA A 413 TYR A 418 1 6 HELIX 12 12 ASP A 454 GLY A 463 1 10 HELIX 13 13 ASP A 487 TRP A 501 1 15 HELIX 14 14 THR A 505 THR A 519 1 15 HELIX 15 15 HIS A 528 GLY A 538 1 11 HELIX 16 16 ASP A 543 GLY A 554 1 12 HELIX 17 17 PHE A 557 ALA A 571 1 15 HELIX 18 18 ASP A 579 LYS A 583 5 5 HELIX 19 19 TRP A 582 ILE A 586 5 5 HELIX 20 20 LEU A 585 LEU A 592 5 8 HELIX 21 21 HIS A 613 MET A 623 1 11 HELIX 22 22 GLY B 1012 GLY B 1023 1 12 HELIX 23 23 TYR B 1056 GLY B 1060 1 5 HELIX 24 24 VAL B 1132 LYS B 1136 1 5 HELIX 25 25 VAL B 1172 SER B 1181 1 10 HELIX 26 26 THR B 1212 GLN B 1221 1 10 HELIX 27 27 SER B 1231 GLY B 1247 1 17 HELIX 28 28 TYR B 1270 ASP B 1276 1 7 HELIX 29 29 ASP B 1296 ALA B 1310 1 15 HELIX 30 30 PRO B 1355 ILE B 1359 5 5 HELIX 31 31 SER B 1370 LEU B 1384 1 15 HELIX 32 32 ASP B 1396 ILE B 1400 5 5 HELIX 33 33 ALA B 1413 TYR B 1418 1 6 HELIX 34 34 ASP B 1454 GLY B 1463 1 10 HELIX 35 35 ASP B 1487 TRP B 1501 1 15 HELIX 36 36 THR B 1505 THR B 1519 1 15 HELIX 37 37 HIS B 1528 GLY B 1538 1 11 HELIX 38 38 ASP B 1543 GLY B 1554 1 12 HELIX 39 39 PHE B 1557 ARG B 1570 1 14 HELIX 40 40 ASP B 1579 MET B 1581 5 3 HELIX 41 41 TRP B 1582 ARG B 1587 1 6 HELIX 42 42 LEU B 1588 LEU B 1592 5 5 HELIX 43 43 HIS B 1613 MET B 1623 1 11 SHEET 1 A 7 ALA A 5 GLN A 9 0 SHEET 2 A 7 VAL A 708 LEU A 715 -1 O ARG A 712 N GLN A 8 SHEET 3 A 7 VAL A 33 SER A 37 -1 O VAL A 33 N ILE A 713 SHEET 4 A 7 SER A 42 VAL A 48 -1 O PHE A 43 N VAL A 36 SHEET 5 A 7 VAL A 51 VAL A 55 -1 O VAL A 51 N VAL A 48 SHEET 6 A 7 LEU A 82 GLN A 86 -1 N VAL A 83 O THR A 54 SHEET 7 A 7 TYR A 75 ASN A 77 -1 O TYR A 75 N GLY A 84 SHEET 1 C 6 GLN A 198 HIS A 203 0 SHEET 2 C 6 LEU A 317 THR A 322 1 O VAL A 318 N ALA A 200 SHEET 3 C 6 ILE A 286 ASP A 290 1 O ILE A 287 N VAL A 319 SHEET 4 C 6 VAL A 225 ASN A 229 1 O LEU A 226 N ILE A 288 SHEET 5 C 6 VAL A 265 THR A 269 1 O THR A 266 N VAL A 227 SHEET 6 C 6 ASN A 251 ARG A 253 1 O ASN A 251 N TYR A 267 SHEET 1 D 6 ILE A 336 ALA A 340 0 SHEET 2 D 6 GLY A 471 PHE A 475 1 O GLY A 471 N GLU A 337 SHEET 3 D 6 SER A 424 ASP A 427 1 N VAL A 425 O ILE A 472 SHEET 4 D 6 ARG A 363 PHE A 367 1 O ARG A 363 N SER A 424 SHEET 5 D 6 VAL A 406 ALA A 410 1 O VAL A 406 N HIS A 364 SHEET 6 D 6 ALA A 388 TYR A 391 1 N VAL A 389 O VAL A 407 SHEET 1 E 2 ILE A 347 PHE A 349 0 SHEET 2 E 2 LYS A 352 ILE A 354 -1 O LYS A 352 N PHE A 349 SHEET 1 F 2 THR A 430 ASP A 437 0 SHEET 2 F 2 THR A 445 PRO A 452 -1 O THR A 445 N ASP A 437 SHEET 1 G 2 THR A 596 PRO A 597 0 SHEET 2 G 2 VAL A 609 THR A 610 1 N THR A 610 O THR A 596 SHEET 1 H 7 THR B1004 GLN B1009 0 SHEET 2 H 7 VAL B1708 SER B1716 -1 O ARG B1712 N GLN B1008 SHEET 3 H 7 VAL B1033 SER B1037 -1 O VAL B1033 N ILE B1713 SHEET 4 H 7 SER B1042 VAL B1048 -1 O PHE B1043 N VAL B1036 SHEET 5 H 7 VAL B1051 VAL B1055 -1 O VAL B1051 N VAL B1048 SHEET 6 H 7 LEU B1082 GLN B1086 -1 O VAL B1083 N THR B1054 SHEET 7 H 7 TYR B1075 ASN B1077 -1 O TYR B1075 N GLY B1084 SHEET 1 J 7 GLN B1198 HIS B1203 0 SHEET 2 J 7 LEU B1317 THR B1322 1 O VAL B1318 N ALA B1200 SHEET 3 J 7 ILE B1286 CYS B1289 1 O ILE B1287 N VAL B1319 SHEET 4 J 7 VAL B1225 ASN B1229 1 O LEU B1226 N ILE B1288 SHEET 5 J 7 VAL B1265 THR B1269 1 N THR B1266 O VAL B1225 SHEET 6 J 7 ASN B1251 ARG B1253 1 O ASN B1251 N TYR B1267 SHEET 7 J 7 THR B1258 ILE B1259 -1 N ILE B1259 O ILE B1252 SHEET 1 K 6 ILE B1336 ALA B1340 0 SHEET 2 K 6 GLY B1471 PHE B1475 1 O GLY B1471 N GLU B1337 SHEET 3 K 6 SER B1424 ASP B1427 1 O VAL B1425 N ARG B1474 SHEET 4 K 6 ARG B1363 PHE B1367 1 O ARG B1363 N SER B1424 SHEET 5 K 6 VAL B1406 ALA B1410 1 O VAL B1406 N HIS B1364 SHEET 6 K 6 ALA B1388 TYR B1391 1 O VAL B1389 N VAL B1409 SHEET 1 L 2 ILE B1347 PHE B1349 0 SHEET 2 L 2 LYS B1352 ILE B1354 -1 O LYS B1352 N PHE B1349 SHEET 1 M 2 THR B1430 ASP B1437 0 SHEET 2 M 2 THR B1445 PRO B1452 -1 N THR B1445 O ASP B1437 SHEET 1 N 2 THR B1596 PRO B1597 0 SHEET 2 N 2 VAL B1609 THR B1610 1 N THR B1610 O THR B1596 LINK SG CYS A 97 ZN ZN A 999 1555 1555 2.39 LINK SG CYS A 99 ZN ZN A 999 1555 1555 2.35 LINK SG CYS A 145 ZN ZN A 999 1555 1555 2.38 LINK O HOH A 998 ZN ZN A 999 1555 1555 2.42 LINK SG CYS B1097 ZN ZN B1999 1555 1555 2.32 LINK SG CYS B1099 ZN ZN B1999 1555 1555 2.61 LINK SG CYS B1145 ZN ZN B1999 1555 1555 2.30 CISPEP 1 ASP A 441 PRO A 442 0 0.29 CISPEP 2 ASP B 1441 PRO B 1442 0 0.30 SITE 1 AC1 4 CYS A 97 CYS A 99 CYS A 145 HOH A 998 SITE 1 AC2 4 CYS B1097 CYS B1099 CYS B1145 SER B1147 SITE 1 AC3 7 PRO A 205 THR A 206 GLY A 207 SER A 208 SITE 2 AC3 7 GLY A 209 LYS A 210 SER A 211 SITE 1 AC4 7 PRO B1205 THR B1206 GLY B1207 SER B1208 SITE 2 AC4 7 GLY B1209 LYS B1210 SER B1211 CRYST1 91.360 110.510 141.200 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010946 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007082 0.00000