HEADER HYDROLASE/HYDROLASE INHIBITOR 24-AUG-99 1CVR TITLE CRYSTAL STRUCTURE OF THE ARG SPECIFIC CYSTEINE PROTEINASE GINGIPAIN R TITLE 2 (RGPB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GINGIPAIN R; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RGPB; COMPND 5 EC: 3.4.22.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 837 KEYWDS CASPASES, CYSTEINE PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.EICHINGER,H.-G.BEISEL REVDAT 6 16-OCT-13 1CVR 1 CONECT LINK REMARK SITE REVDAT 5 11-SEP-13 1CVR 1 REMARK REVDAT 4 13-JUL-11 1CVR 1 VERSN REVDAT 3 24-FEB-09 1CVR 1 VERSN REVDAT 2 01-APR-03 1CVR 1 JRNL REVDAT 1 01-MAR-00 1CVR 0 JRNL AUTH A.EICHINGER,H.G.BEISEL,U.JACOB,R.HUBER,F.J.MEDRANO, JRNL AUTH 2 A.BANBULA,J.POTEMPA,J.TRAVIS,W.BODE JRNL TITL CRYSTAL STRUCTURE OF GINGIPAIN R: AN ARG-SPECIFIC BACTERIAL JRNL TITL 2 CYSTEINE PROTEINASE WITH A CASPASE-LIKE FOLD. JRNL REF EMBO J. V. 18 5453 1999 JRNL REFN ISSN 0261-4189 JRNL PMID 10523290 JRNL DOI 10.1093/EMBOJ/18.20.5453 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 23281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1865 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3345 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 322 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.55 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-99. REMARK 100 THE RCSB ID CODE IS RCSB009569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-97 REMARK 200 TEMPERATURE (KELVIN) : 289 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (TRUNCATE) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25583 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 15.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % PEG 8000 100 MM ZINC ACETATE 100 REMARK 280 MM SODIUM CACODYLATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.96500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.91000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.96000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.91000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.96500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.96000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 433 REMARK 465 THR A 434 REMARK 465 SER A 435 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS A 104 O HOH A 860 2.08 REMARK 500 OE2 GLU A 410 O HOH A 821 2.13 REMARK 500 OE1 GLN A 98 O HOH A 860 2.15 REMARK 500 OD2 ASP A 409 O HOH A 821 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 405 O HOH A 922 4566 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 146.25 -174.11 REMARK 500 SER A 220 -28.27 102.70 REMARK 500 VAL A 245 12.47 30.58 REMARK 500 LYS A 326 -130.57 54.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 689 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH A 772 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH A 792 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 842 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH A 865 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH A 879 DISTANCE = 8.08 ANGSTROMS REMARK 525 HOH A 901 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 906 DISTANCE = 5.30 ANGSTROMS REMARK 525 HOH A 917 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 296 OE2 REMARK 620 2 GLU A 293 OE1 101.7 REMARK 620 3 HOH A 619 O 105.5 104.8 REMARK 620 4 GLU A 293 OE2 142.1 48.5 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 119 OE1 REMARK 620 2 HOH A 922 O 97.0 REMARK 620 3 HOH A 712 O 74.8 171.1 REMARK 620 4 GLU A 119 OE2 56.9 62.7 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 161 OE1 REMARK 620 2 HOH A 882 O 78.5 REMARK 620 3 ASP A 292 OD2 161.7 86.6 REMARK 620 4 HOH A 818 O 99.1 175.9 96.3 REMARK 620 5 HOH A 717 O 87.7 94.9 82.8 88.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 152 OE1 REMARK 620 2 HIS A 211 NE2 110.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD1 REMARK 620 2 GLU A 258 OE2 81.1 REMARK 620 3 HOH A 690 O 76.9 99.9 REMARK 620 4 HOH A 632 O 150.5 110.9 74.6 REMARK 620 5 HOH A 672 O 86.4 165.1 84.8 83.9 REMARK 620 6 ASP A 78 OD2 53.6 85.7 128.9 149.9 80.4 REMARK 620 7 PHE A 249 O 130.8 102.0 147.0 74.6 80.2 77.4 REMARK 620 8 GLU A 258 OE1 119.3 49.7 79.3 62.1 145.1 133.2 96.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 819 O REMARK 620 2 VAL A 100 O 83.7 REMARK 620 3 HOH A 716 O 153.0 87.2 REMARK 620 4 TYR A 105 O 91.8 171.3 100.0 REMARK 620 5 ASP A 103 OD2 73.1 92.4 81.9 93.5 REMARK 620 6 GLU A 107 OE2 127.9 95.0 78.2 81.9 158.4 REMARK 620 7 GLU A 107 OE1 78.8 82.0 125.0 89.9 151.8 49.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 509 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 130 ND1 REMARK 620 2 HOH A 921 O 126.3 REMARK 620 N 1 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(3S)-6-CARBAMIMIDAMIDO-1-CHLORO- REMARK 630 2-OXOHEXAN-3-YL]-L-PHENYLALANINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 H37 A 501 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PHE ARG 0QE REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE H37 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 509 DBREF 1CVR A 1 435 UNP P95493 CPG2_PORGI 230 664 SEQRES 1 A 435 TYR THR PRO VAL GLU GLU LYS GLU ASN GLY ARG MET ILE SEQRES 2 A 435 VAL ILE VAL ALA LYS LYS TYR GLU GLY ASP ILE LYS ASP SEQRES 3 A 435 PHE VAL ASP TRP LYS ASN GLN ARG GLY LEU ARG THR GLU SEQRES 4 A 435 VAL LYS VAL ALA GLU ASP ILE ALA SER PRO VAL THR ALA SEQRES 5 A 435 ASN ALA ILE GLN GLN PHE VAL LYS GLN GLU TYR GLU LYS SEQRES 6 A 435 GLU GLY ASN ASP LEU THR TYR VAL LEU LEU VAL GLY ASP SEQRES 7 A 435 HIS LYS ASP ILE PRO ALA LYS ILE THR PRO GLY ILE LYS SEQRES 8 A 435 SER ASP GLN VAL TYR GLY GLN ILE VAL GLY ASN ASP HIS SEQRES 9 A 435 TYR ASN GLU VAL PHE ILE GLY ARG PHE SER CYS GLU SER SEQRES 10 A 435 LYS GLU ASP LEU LYS THR GLN ILE ASP ARG THR ILE HIS SEQRES 11 A 435 TYR GLU ARG ASN ILE THR THR GLU ASP LYS TRP LEU GLY SEQRES 12 A 435 GLN ALA LEU CYS ILE ALA SER ALA GLU GLY GLY PRO SER SEQRES 13 A 435 ALA ASP ASN GLY GLU SER ASP ILE GLN HIS GLU ASN VAL SEQRES 14 A 435 ILE ALA ASN LEU LEU THR GLN TYR GLY TYR THR LYS ILE SEQRES 15 A 435 ILE LYS CYS TYR ASP PRO GLY VAL THR PRO LYS ASN ILE SEQRES 16 A 435 ILE ASP ALA PHE ASN GLY GLY ILE SER LEU VAL ASN TYR SEQRES 17 A 435 THR GLY HIS GLY SER GLU THR ALA TRP GLY THR SER HIS SEQRES 18 A 435 PHE GLY THR THR HIS VAL LYS GLN LEU THR ASN SER ASN SEQRES 19 A 435 GLN LEU PRO PHE ILE PHE ASP VAL ALA CYS VAL ASN GLY SEQRES 20 A 435 ASP PHE LEU PHE SER MET PRO CYS PHE ALA GLU ALA LEU SEQRES 21 A 435 MET ARG ALA GLN LYS ASP GLY LYS PRO THR GLY THR VAL SEQRES 22 A 435 ALA ILE ILE ALA SER THR ILE ASP GLN TYR TRP ALA PRO SEQRES 23 A 435 PRO MET ARG GLY GLN ASP GLU MET ASN GLU ILE LEU CYS SEQRES 24 A 435 GLU LYS HIS PRO ASN ASN ILE LYS ARG THR PHE GLY GLY SEQRES 25 A 435 VAL THR MET ASN GLY MET PHE ALA MET VAL GLU LYS TYR SEQRES 26 A 435 LYS LYS ASP GLY GLU ASN MET LEU ASP THR TRP THR VAL SEQRES 27 A 435 PHE GLY ASP PRO SER LEU LEU VAL ARG THR LEU VAL PRO SEQRES 28 A 435 THR GLU MET GLN VAL THR ALA PRO ALA ASN ILE SER ALA SEQRES 29 A 435 SER ALA GLN THR PHE GLU VAL ALA CYS ASP TYR ASN GLY SEQRES 30 A 435 ALA ILE ALA THR LEU SER ASP ASP GLY ASP MET VAL GLY SEQRES 31 A 435 THR ALA ILE VAL LYS ASP GLY LYS ALA ILE ILE LYS LEU SEQRES 32 A 435 ASN GLU SER ILE ALA ASP GLU THR ASN LEU THR LEU THR SEQRES 33 A 435 VAL VAL GLY TYR ASN LYS VAL THR VAL ILE LYS ASP VAL SEQRES 34 A 435 LYS VAL GLU GLY THR SER HET H37 A 501 34 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET ZN A 507 1 HET CA A 508 1 HET ZN A 509 1 HETNAM H37 D-PHENYLALANYL-N-[(3S)-6-CARBAMIMIDAMIDO-1-CHLORO-2- HETNAM 2 H37 OXOHEXAN-3-YL]-L-PHENYLALANINAMIDE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETSYN H37 FFRCK FORMUL 2 H37 C25 H33 CL N6 O3 FORMUL 3 CA 6(CA 2+) FORMUL 8 ZN 2(ZN 2+) FORMUL 11 HOH *322(H2 O) HELIX 1 1 LYS A 18 ASP A 23 5 6 HELIX 2 2 ILE A 24 ARG A 34 1 11 HELIX 3 3 ALA A 43 ALA A 47 1 5 HELIX 4 4 THR A 51 LYS A 65 1 15 HELIX 5 5 ASP A 93 GLN A 98 5 6 HELIX 6 6 SER A 117 ASN A 134 1 18 HELIX 7 7 ALA A 157 GLU A 161 5 5 HELIX 8 8 SER A 162 GLY A 178 1 17 HELIX 9 9 THR A 191 GLY A 202 1 12 HELIX 10 10 HIS A 226 LEU A 230 5 5 HELIX 11 11 CYS A 255 ALA A 263 1 9 HELIX 12 12 ALA A 285 CYS A 299 1 15 HELIX 13 13 THR A 309 LYS A 326 1 18 HELIX 14 14 TYR A 325 THR A 335 1 11 SHEET 1 A 4 ARG A 37 VAL A 42 0 SHEET 2 A 4 ARG A 11 VAL A 16 1 N MET A 12 O ARG A 37 SHEET 3 A 4 LEU A 70 VAL A 76 1 N THR A 71 O ARG A 11 SHEET 4 A 4 PHE A 109 PHE A 113 1 N PHE A 109 O THR A 71 SHEET 1 B 2 LYS A 85 THR A 87 0 SHEET 2 B 2 ILE A 90 SER A 92 -1 N ILE A 90 O THR A 87 SHEET 1 C 6 LYS A 181 TYR A 186 0 SHEET 2 C 6 GLN A 144 ALA A 149 1 O ALA A 145 N ILE A 183 SHEET 3 C 6 LEU A 205 THR A 209 1 O LEU A 205 N LEU A 146 SHEET 4 C 6 PHE A 238 VAL A 242 1 O PHE A 238 N VAL A 206 SHEET 5 C 6 ALA A 274 SER A 278 1 O ALA A 274 N ILE A 239 SHEET 6 C 6 TRP A 336 PHE A 339 -1 N THR A 337 O ALA A 277 SHEET 1 D 2 GLN A 264 LYS A 265 0 SHEET 2 D 2 LYS A 268 PRO A 269 -1 O LYS A 268 N LYS A 265 SHEET 1 E 3 VAL A 356 THR A 357 0 SHEET 2 E 3 THR A 368 CYS A 373 -1 N ALA A 372 O THR A 357 SHEET 3 E 3 LYS A 398 LYS A 402 -1 N ALA A 399 O VAL A 371 SHEET 1 F 5 ASN A 361 SER A 363 0 SHEET 2 F 5 VAL A 425 GLU A 432 1 O LYS A 430 N ILE A 362 SHEET 3 F 5 ASN A 412 VAL A 418 -1 O LEU A 413 N VAL A 429 SHEET 4 F 5 ILE A 379 ASP A 384 -1 N ILE A 379 O VAL A 418 SHEET 5 F 5 ASP A 387 ILE A 393 -1 O ASP A 387 N ASP A 384 LINK OE2 GLU A 296 CA CA A 505 1555 1555 1.96 LINK OE1 GLU A 293 CA CA A 505 1555 1555 2.05 LINK OE1 GLU A 119 CA CA A 508 1555 1555 2.06 LINK OE1 GLU A 161 CA CA A 502 1555 1555 2.11 LINK CA CA A 502 O HOH A 882 1555 1555 2.13 LINK OD2 ASP A 292 CA CA A 502 1555 1555 2.17 LINK CA CA A 502 O HOH A 818 1555 1555 2.17 LINK CA CA A 505 O HOH A 619 1555 1555 2.18 LINK CA CA A 502 O HOH A 717 1555 1555 2.20 LINK CA CA A 508 O HOH A 922 1555 1555 2.30 LINK OE1 GLU A 152 ZN ZN A 507 1555 1555 2.30 LINK OD1 ASP A 78 CA CA A 503 1555 1555 2.31 LINK CA CA A 504 O HOH A 819 1555 1555 2.31 LINK O VAL A 100 CA CA A 504 1555 1555 2.32 LINK ND1 HIS A 130 ZN ZN A 509 1555 1555 2.33 LINK OE2 GLU A 258 CA CA A 503 1555 1555 2.33 LINK CA CA A 504 O HOH A 716 1555 1555 2.33 LINK O TYR A 105 CA CA A 504 1555 1555 2.35 LINK OD2 ASP A 103 CA CA A 504 1555 1555 2.41 LINK NE2 HIS A 211 ZN ZN A 507 1555 1555 2.41 LINK CA CA A 506 O HOH A 677 1555 1555 2.41 LINK CA CA A 503 O HOH A 690 1555 1555 2.44 LINK CA CA A 503 O HOH A 632 1555 1555 2.44 LINK OE2 GLU A 107 CA CA A 504 1555 1555 2.48 LINK CA CA A 508 O HOH A 712 1555 1555 2.48 LINK OE2 GLU A 119 CA CA A 508 1555 1555 2.50 LINK CA CA A 503 O HOH A 672 1555 1555 2.53 LINK OD2 ASP A 78 CA CA A 503 1555 1555 2.53 LINK O PHE A 249 CA CA A 503 1555 1555 2.56 LINK ZN ZN A 509 O HOH A 921 1555 1555 2.63 LINK OE1 GLU A 107 CA CA A 504 1555 1555 2.73 LINK OE1 GLU A 258 CA CA A 503 1555 1555 2.80 LINK OE2 GLU A 293 CA CA A 505 1555 1555 2.90 LINK SG CYS A 244 C3 H37 A 501 1555 1555 1.80 CISPEP 1 SER A 48 PRO A 49 0 0.21 CISPEP 2 ASP A 187 PRO A 188 0 -0.34 SITE 1 AC1 16 ASP A 163 THR A 191 PRO A 192 GLY A 210 SITE 2 AC1 16 HIS A 211 GLY A 212 HIS A 221 VAL A 242 SITE 3 AC1 16 CYS A 244 GLN A 282 TYR A 283 TRP A 284 SITE 4 AC1 16 MET A 288 HOH A 640 HOH A 724 HOH A 772 SITE 1 AC2 6 GLU A 161 HIS A 166 ASP A 292 HOH A 717 SITE 2 AC2 6 HOH A 818 HOH A 882 SITE 1 AC3 6 ASP A 78 PHE A 249 GLU A 258 HOH A 632 SITE 2 AC3 6 HOH A 672 HOH A 690 SITE 1 AC4 6 VAL A 100 ASP A 103 TYR A 105 GLU A 107 SITE 2 AC4 6 HOH A 716 HOH A 819 SITE 1 AC5 4 GLU A 293 GLU A 296 HIS A 302 HOH A 619 SITE 1 AC6 4 HIS A 221 ASP A 328 HOH A 646 HOH A 677 SITE 1 AC7 6 GLU A 152 HIS A 211 TRP A 284 LYS A 327 SITE 2 AC7 6 HOH A 724 HOH A 920 SITE 1 AC8 5 GLU A 119 ASP A 387 GLU A 405 HOH A 712 SITE 2 AC8 5 HOH A 922 SITE 1 AC9 4 HIS A 130 ASN A 134 HOH A 852 HOH A 921 CRYST1 51.930 79.920 99.820 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019257 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010018 0.00000