HEADER APOPTOSIS 26-AUG-99 1CWW TITLE SOLUTION STRUCTURE OF THE CASPASE RECRUITMENT DOMAIN (CARD) FROM APAF- TITLE 2 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOTIC PROTEASE ACTIVATING FACTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CASPASE RECRUITMENT DOMAIN; COMPND 5 SYNONYM: CARD OF APAF-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX 6P-3 KEYWDS HELICAL BUNDLE, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.L.DAY,C.DUPONT,M.LACKMANN,D.L.VAUX,M.G.HINDS REVDAT 4 21-DEC-22 1CWW 1 SEQADV REVDAT 3 16-FEB-22 1CWW 1 REMARK REVDAT 2 24-FEB-09 1CWW 1 VERSN REVDAT 1 21-JAN-00 1CWW 0 JRNL AUTH C.L.DAY,C.DUPONT,M.LACKMANN,D.L.VAUX,M.G.HINDS JRNL TITL SOLUTION STRUCTURE AND MUTAGENESIS OF THE CASPASE JRNL TITL 2 RECRUITMENT DOMAIN (CARD) FROM APAF-1. JRNL REF CELL DEATH DIFFER. V. 6 1125 1999 JRNL REFN ISSN 1350-9047 JRNL PMID 10578182 JRNL DOI 10.1038/SJ.CDD.4400584 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.1, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER (AG) (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 2314 NOE-DERIVED DISTANCE CONSTRAINTS, 31 HYDROGEN BOND REMARK 3 CONSTRAINTS AND 173 DIHEDRAL ANGLE CONSTRAINTS. REMARK 4 REMARK 4 1CWW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009593. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 30; 30; 30 REMARK 210 PH : 6.7; 6.7; 6.7 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL REMARK 210 PRESSURE : NULL; NULL; NULL REMARK 210 SAMPLE CONTENTS : UNLABELLED 1.5MM APAF-1 CARD REMARK 210 20MM SODIUM PHOSPHATE PH 6.7 REMARK 210 75MM NACL 2MM DITHIOTHREITOL; U- REMARK 210 15N 1.5MM APAF-1 CARD 20MM REMARK 210 SODIUM PHOSPHATE PH 6.7 75MM REMARK 210 NACL 2MM DITHIOTHREITOL; U-15N; REMARK 210 U-13C 1.5MM APAF-1 CARD 20MM REMARK 210 SODIUM PHOSPHATE PH 6.7 75MM REMARK 210 NACL 2MM DITHIOTHREITOL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; 3D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY 1.3.13, DYANA 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY TORSION ANGLE REMARK 210 DYNAMICS SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 12 43.84 -82.05 REMARK 500 1 LEU A 16 -80.10 -49.28 REMARK 500 1 SER A 23 -92.58 -64.83 REMARK 500 1 GLN A 50 -80.81 -47.83 REMARK 500 1 LYS A 62 50.46 -140.29 REMARK 500 1 LYS A 63 -128.50 -107.58 REMARK 500 1 TYR A 80 50.87 -101.88 REMARK 500 1 SER A 95 -70.68 77.35 REMARK 500 2 SER A -1 -114.81 -125.10 REMARK 500 2 HIS A 12 36.80 -80.11 REMARK 500 2 LEU A 16 -82.29 -44.80 REMARK 500 2 THR A 22 -102.09 -66.29 REMARK 500 2 SER A 23 -101.94 29.09 REMARK 500 2 GLN A 50 -87.03 -41.47 REMARK 500 2 LYS A 63 -120.94 -94.00 REMARK 500 2 GLU A 78 -139.45 -116.80 REMARK 500 2 VAL A 94 49.89 -102.42 REMARK 500 2 SER A 95 -62.79 74.56 REMARK 500 3 HIS A 12 40.51 -85.38 REMARK 500 3 LEU A 16 -84.46 -44.76 REMARK 500 3 THR A 22 -101.77 -82.40 REMARK 500 3 SER A 23 -111.86 49.21 REMARK 500 3 GLN A 49 -30.49 -38.21 REMARK 500 3 GLN A 50 -92.13 -41.02 REMARK 500 3 LYS A 63 -163.20 -127.18 REMARK 500 3 GLU A 78 -140.20 -92.64 REMARK 500 3 PRO A 92 -83.64 -61.26 REMARK 500 3 SER A 95 81.88 -69.16 REMARK 500 3 SER A 96 76.36 43.24 REMARK 500 4 HIS A 12 39.23 -83.19 REMARK 500 4 LEU A 16 -84.73 -46.63 REMARK 500 4 THR A 22 -89.45 -113.88 REMARK 500 4 SER A 23 -77.88 -8.91 REMARK 500 4 GLN A 50 -83.89 -43.46 REMARK 500 4 LYS A 63 -157.23 -132.17 REMARK 500 4 TYR A 80 53.25 -104.89 REMARK 500 5 PRO A -4 45.66 -82.91 REMARK 500 5 HIS A 12 36.29 -81.81 REMARK 500 5 LEU A 16 -88.95 -50.85 REMARK 500 5 THR A 22 -103.29 -120.50 REMARK 500 5 SER A 23 -101.36 30.45 REMARK 500 5 GLN A 50 -73.37 -42.79 REMARK 500 5 LYS A 63 -145.84 -123.78 REMARK 500 5 GLU A 78 -144.63 -108.05 REMARK 500 6 SER A -1 -155.56 -166.07 REMARK 500 6 HIS A 12 41.03 -86.79 REMARK 500 6 LEU A 16 -85.70 -49.44 REMARK 500 6 THR A 22 -104.06 -120.43 REMARK 500 6 SER A 23 -107.57 44.48 REMARK 500 6 GLN A 50 -84.38 -37.77 REMARK 500 REMARK 500 THIS ENTRY HAS 177 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1CWW A 1 97 UNP O14727 APAF_HUMAN 1 97 SEQADV 1CWW GLY A -5 UNP O14727 CLONING ARTIFACT SEQADV 1CWW PRO A -4 UNP O14727 CLONING ARTIFACT SEQADV 1CWW LEU A -3 UNP O14727 CLONING ARTIFACT SEQADV 1CWW GLY A -2 UNP O14727 CLONING ARTIFACT SEQADV 1CWW SER A -1 UNP O14727 CLONING ARTIFACT SEQRES 1 A 102 GLY PRO LEU GLY SER MET ASP ALA LYS ALA ARG ASN CYS SEQRES 2 A 102 LEU LEU GLN HIS ARG GLU ALA LEU GLU LYS ASP ILE LYS SEQRES 3 A 102 THR SER TYR ILE MET ASP HIS MET ILE SER ASP GLY PHE SEQRES 4 A 102 LEU THR ILE SER GLU GLU GLU LYS VAL ARG ASN GLU PRO SEQRES 5 A 102 THR GLN GLN GLN ARG ALA ALA MET LEU ILE LYS MET ILE SEQRES 6 A 102 LEU LYS LYS ASP ASN ASP SER TYR VAL SER PHE TYR ASN SEQRES 7 A 102 ALA LEU LEU HIS GLU GLY TYR LYS ASP LEU ALA ALA LEU SEQRES 8 A 102 LEU HIS ASP GLY ILE PRO VAL VAL SER SER SER HELIX 1 1 ASP A 2 GLN A 11 1 10 HELIX 2 2 ALA A 15 ILE A 20 1 6 HELIX 3 3 THR A 22 ASP A 32 1 11 HELIX 4 4 THR A 36 GLU A 46 1 11 HELIX 5 5 THR A 48 LEU A 61 1 14 HELIX 6 6 ASP A 64 GLU A 78 1 15 HELIX 7 7 TYR A 80 ASP A 89 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1