HEADER PLANT PROTEIN 30-AUG-99 1CXR TITLE AUTOMATED 2D NOESY ASSIGNMENT AND STRUCTURE CALCULATION OF TITLE 2 CRAMBIN(S22/I25) WITH SELF-CORRECTING DISTANCE GEOMETRY BASED TITLE 3 NOAH/DIAMOD PROGRAMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRAMBIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ISOFORM OF CRAMBIN (46 RESIDUES); COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRAMBE HISPANICA SUBSP. ABYSSINICA; SOURCE 3 ORGANISM_TAXID: 3721; SOURCE 4 STRAIN: SUBSP. ABYSSINICA; SOURCE 5 ORGAN: SEED KEYWDS CRAMBIN, CRAMBE ABYSSINICA, PLANT SEED PROTEIN FEB. 20, 1997, PLANT KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR Y.XU,J.WU,D.GORENSTEIN,W.BRAUN REVDAT 6 14-MAR-18 1CXR 1 SEQADV REVDAT 5 24-JAN-18 1CXR 1 JRNL REMARK REVDAT 4 24-FEB-09 1CXR 1 VERSN REVDAT 3 01-APR-03 1CXR 1 JRNL REVDAT 2 01-NOV-99 1CXR 1 COMPND REVDAT 1 07-SEP-99 1CXR 0 JRNL AUTH Y.XU,J.WU,D.GORENSTEIN,W.BRAUN JRNL TITL AUTOMATED 2D NOESY ASSIGNMENT AND STRUCTURE CALCULATION OF JRNL TITL 2 CRAMBIN(S22/I25) WITH THE SELF-CORRECTING DISTANCE GEOMETRY JRNL TITL 3 BASED NOAH/DIAMOD PROGRAMS. JRNL REF J.MAGN.RESON. V. 136 76 1999 JRNL REFN ISSN 0022-2364 JRNL PMID 9887292 JRNL DOI 10.1006/JMRE.1998.1616 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.MUMENTHALER,W.BRAUN REMARK 1 TITL AUTOMATED ASSIGNMENT OF SIMULATED, EXPERIMENTAL NOESY REMARK 1 TITL 2 SPECTRA OF PROTEINS BY FEEDBACK FILTERING AND REMARK 1 TITL 3 SELF-CORRECTING DISTANCE GEOMETRY REMARK 1 REF J.MOL.BIOL. V. 254 465 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1995.0631 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.MUMENTHALER,P.GUNTERT,W.BRAUN,K.WUTHRICH REMARK 1 TITL AUTOMATED COMBINED ASSIGNMENT OF NOESY SPECTRA AND REMARK 1 TITL 2 THREE-DIMENSIONAL PROTEIN STRUCTURE DETERMINATION REMARK 1 REF J.BIOMOL.NMR V. 10 351 1997 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1018383106236 REMARK 1 REFERENCE 3 REMARK 1 AUTH Y.XU,C.H.SCHEIN,W.BRAUN REMARK 1 TITL COMBINED AUTOMATED ASSIGNMENT OF NMR SPECTRA AND CALCULATION REMARK 1 TITL 2 OF THREE- DIMENSIONAL PROTEIN STRUCTURES REMARK 1 REF BIOLOGICAL MAGNETIC V. 17 37 1999 REMARK 1 REF 2 RESONANCE REMARK 1 PUBL KLUWER/ACADEMIC/PLENUM PUBLISHERS REMARK 1 REFERENCE 4 REMARK 1 AUTH T.H.SCHAUMANN,W.BRAUN,K.WUTHRICH REMARK 1 TITL A PROGRAM, FANTOM, FOR ENERGY REFINEMENT OF POLYPEPTIDES AND REMARK 1 TITL 2 PROTEINS USING A NEWTON-RAPHSON MINIMIZER IN THE TORSION REMARK 1 TITL 3 ANGLE SPACE REMARK 1 REF BIOPOLYMERS V. 29 679 1990 REMARK 1 REFN ISSN 0006-3525 REMARK 1 REFERENCE 5 REMARK 1 AUTH R.FRACZKIEWICZ,W.BRAUN REMARK 1 TITL EXACT AND EFFICIENT ANALYTICAL CALCULATION OF THE ACCESSIBLE REMARK 1 TITL 2 SURFACE AREAS AND THEIR GRADIENTS MACROMOLECULES REMARK 1 REF J.COMPUT.CHEM. V. 19 319 1998 REMARK 1 REFN ISSN 0192-8651 REMARK 1 DOI 10.1002/(SICI)1096-987X(199802)19:3<319::AID-JCC6>3.3.CO;2-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NOAH 1.0, FANTOM 4.0 REMARK 3 AUTHORS : C.MUMENTHALER, Y.XU, W.BRAUN (NOAH), TH.SCHAUMANN, REMARK 3 W.BRAUN, K.WUTHRICH, R.FRACZKIEWICZ (FANTOM) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SEE REFERENCE: J. MAGN. RESON. 136, P76 REMARK 3 -85(1999) REMARK 4 REMARK 4 1CXR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009611. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.5 MM CRAMBIN(SER/ILE) 0.7 ML REMARK 210 OF 75% D6-ACETONE, 20%H2O,5%D2O REMARK 210 BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : VXRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIAMOD 1.0 REMARK 210 METHOD USED : SELF-CORRECTING DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY,TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 8 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 24 -66.68 74.41 REMARK 500 1 TYR A 29 32.16 -89.98 REMARK 500 1 THR A 30 17.13 -140.00 REMARK 500 1 CYS A 32 -179.14 -64.87 REMARK 500 2 THR A 21 -85.70 -102.35 REMARK 500 2 SER A 22 -56.75 76.33 REMARK 500 2 THR A 28 -125.28 -90.09 REMARK 500 2 TYR A 29 40.15 -89.96 REMARK 500 2 ALA A 38 -94.32 -157.11 REMARK 500 3 THR A 21 34.07 -159.94 REMARK 500 3 SER A 22 -131.23 38.36 REMARK 500 3 GLU A 23 54.53 -90.05 REMARK 500 3 ALA A 24 -69.94 73.37 REMARK 500 3 PRO A 36 -80.23 -75.00 REMARK 500 3 ALA A 45 -65.82 75.59 REMARK 500 4 THR A 21 -76.60 -135.08 REMARK 500 4 SER A 22 60.37 35.77 REMARK 500 4 ALA A 38 -93.58 -156.93 REMARK 500 4 ASP A 43 -60.24 -110.00 REMARK 500 5 THR A 21 136.73 64.70 REMARK 500 5 SER A 22 -82.36 -63.96 REMARK 500 5 GLU A 23 -75.90 -90.00 REMARK 500 5 ALA A 24 -70.45 -171.21 REMARK 500 5 TYR A 29 32.70 -90.04 REMARK 500 5 THR A 30 18.07 -140.01 REMARK 500 5 ALA A 38 60.98 34.66 REMARK 500 5 ALA A 45 -63.86 75.89 REMARK 500 6 ILE A 7 -14.56 83.49 REMARK 500 6 THR A 21 -77.99 -131.41 REMARK 500 6 TYR A 44 -51.46 -138.83 REMARK 500 6 ALA A 45 -64.99 75.42 REMARK 500 7 PHE A 13 40.21 -90.00 REMARK 500 7 THR A 21 99.58 61.19 REMARK 500 7 GLU A 23 -89.17 -90.03 REMARK 500 7 ALA A 24 -94.59 -173.94 REMARK 500 7 PRO A 36 -168.30 -75.00 REMARK 500 7 ALA A 38 71.39 30.66 REMARK 500 8 THR A 21 -78.09 -134.64 REMARK 500 8 ALA A 24 -157.56 -149.70 REMARK 500 9 SER A 22 -143.07 46.09 REMARK 500 9 GLU A 23 45.62 -89.94 REMARK 500 9 ALA A 24 -66.79 75.54 REMARK 500 9 TYR A 29 46.19 -90.01 REMARK 500 9 THR A 30 12.20 -140.01 REMARK 500 9 TYR A 44 -51.88 -125.12 REMARK 500 9 ALA A 45 84.36 54.42 REMARK 500 10 THR A 21 74.07 58.47 REMARK 500 10 SER A 22 -78.04 -72.18 REMARK 500 10 ALA A 24 -66.73 74.37 REMARK 500 10 ALA A 27 -79.40 -90.01 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 17 0.13 SIDE CHAIN REMARK 500 6 ARG A 10 0.15 SIDE CHAIN REMARK 500 8 ARG A 17 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1CCM RELATED DB: PDB REMARK 900 1CCM CONTAINS TWO ISOFORMS: SER22/ILE25 AND PRO22/LEU DBREF 1CXR A 1 46 UNP P01542 CRAM_CRAAB 1 46 SEQADV 1CXR SER A 22 UNP P01542 PRO 22 ENGINEERED MUTATION SEQRES 1 A 46 THR THR CYS CYS PRO SER ILE VAL ALA ARG SER ASN PHE SEQRES 2 A 46 ASN VAL CYS ARG LEU PRO GLY THR SER GLU ALA ILE CYS SEQRES 3 A 46 ALA THR TYR THR GLY CYS ILE ILE ILE PRO GLY ALA THR SEQRES 4 A 46 CYS PRO GLY ASP TYR ALA ASN HELIX 1 1 ILE A 7 CYS A 16 5 10 SSBOND 1 CYS A 3 CYS A 40 1555 1555 1.99 SSBOND 2 CYS A 4 CYS A 32 1555 1555 1.94 SSBOND 3 CYS A 16 CYS A 26 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1