HEADER TRANSFERASE 30-AUG-99 1CXU TITLE 1.42A RESOLUTION ASV INTEGRASE CORE DOMAIN FROM CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (AVIAN SARCOMA VIRUS INTEGRASE); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC CORE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVIAN SARCOMA VIRUS; SOURCE 3 ORGANISM_TAXID: 11876; SOURCE 4 STRAIN: ROUS SARCOMA VIRUS, SCHMIDT-RUPPIN B; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRC23IN(52-207) KEYWDS MIXED BETA-SHEET SURROUNDED BY ALPHA-HELICES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,Z.DAUTER,F.YANG,J.ALEXANDRATOS,A.WLODAWER REVDAT 5 07-FEB-24 1CXU 1 REMARK SEQADV REVDAT 4 13-JUL-11 1CXU 1 VERSN REVDAT 3 24-FEB-09 1CXU 1 VERSN REVDAT 2 02-APR-00 1CXU 1 JRNL REMARK COMPND REVDAT 1 08-SEP-99 1CXU 0 JRNL AUTH J.LUBKOWSKI,Z.DAUTER,F.YANG,J.ALEXANDRATOS,G.MERKEL, JRNL AUTH 2 A.M.SKALKA,A.WLODAWER JRNL TITL ATOMIC RESOLUTION STRUCTURES OF THE CORE DOMAIN OF AVIAN JRNL TITL 2 SARCOMA VIRUS INTEGRASE AND ITS D64N MUTANT. JRNL REF BIOCHEMISTRY V. 38 13512 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10521258 JRNL DOI 10.1021/BI991362Q REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.BUJACZ,M.JASKOLSKI,J.ALEXANDRATOS,A.WLODAWER,G.MERKEL, REMARK 1 AUTH 2 R.A.KATZ,A.M.SKALKA REMARK 1 TITL HIGH RESOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF AVIAN REMARK 1 TITL 2 SARCOMA VIRUS INTEGRASE REMARK 1 REF J.MOL.BIOL. V. 253 333 1995 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.1995.0556 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.187 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.187 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 0.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1142 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 34287 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.183 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 0.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 3166 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1101 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1308.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 536 REMARK 3 NUMBER OF RESTRAINTS : 467 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 ANGLE DISTANCES (A) : 0.020 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.025 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.060 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.060 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.010 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.050 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CXU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000009612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 13.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.550 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.05000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 10% ISOPROPANOL, 100 MM REMARK 280 CITRATE, PH 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.36500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.08850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.08850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.04750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.08850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.08850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.68250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.08850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.08850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.04750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.08850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.08850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 19.68250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 39.36500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.73000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 GLU A 51 REMARK 465 GLY A 52 REMARK 465 ARG A 53 REMARK 465 GLY A 54 REMARK 465 LEU A 55 REMARK 465 PHE A 199 REMARK 465 GLU A 200 REMARK 465 ARG A 201 REMARK 465 GLY A 202 REMARK 465 GLU A 203 REMARK 465 ASN A 204 REMARK 465 THR A 205 REMARK 465 LYS A 206 REMARK 465 THR A 207 REMARK 465 ASN A 208 REMARK 465 LEU A 209 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 129 CG CD CE NZ REMARK 480 ARG A 132 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 124 O HOH A 663 1.59 REMARK 500 NE ARG A 132 O HOH A 487 1.65 REMARK 500 NE2 GLN A 102 O HOH A 410 1.72 REMARK 500 O ARG A 137 O HOH A 621 1.74 REMARK 500 O SER A 130 O HOH A 427 1.82 REMARK 500 O ASN A 122 O HOH A 657 1.84 REMARK 500 OE1 GLN A 153 O HOH A 411 1.87 REMARK 500 OD2 ASP A 121 O HOH A 489 2.04 REMARK 500 NE ARG A 132 O HOH A 468 2.05 REMARK 500 OG SER A 130 O HOH A 456 2.06 REMARK 500 ND1 HIS A 142 O HOH A 490 2.08 REMARK 500 OG1 THR A 127 O HOH A 647 2.10 REMARK 500 CG GLU A 133 O HOH A 422 2.11 REMARK 500 OE1 GLN A 151 O HOH A 656 2.11 REMARK 500 OG1 THR A 97 O HOH A 448 2.13 REMARK 500 O PHE A 126 O HOH A 620 2.17 REMARK 500 OG SER A 183 O HOH A 458 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 442 O HOH A 651 3644 1.67 REMARK 500 O HOH A 425 O HOH A 634 4565 1.74 REMARK 500 O HOH A 480 O HOH A 601 3644 1.81 REMARK 500 O HOH A 625 O HOH A 651 3644 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 64 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 153 -10.23 -142.23 REMARK 500 LYS A 178 -119.90 -134.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ACT REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: NULL REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 299 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ASV RELATED DB: PDB REMARK 900 SAME PROTEIN AT LOWER RESOLUTION REMARK 900 RELATED ID: 1CXQ RELATED DB: PDB REMARK 900 RELATED ID: 1CZ9 RELATED DB: PDB REMARK 900 RELATED ID: 1CZB RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE APPARENT DISCREPANCY BETWEEN THE SEQUENCE PRESENTED REMARK 999 HERE AND THE "POL_RSVP" SEQUENCE IS A RESULT OF VIRAL REMARK 999 STRAIN VARIATION. THE STRAIN USED FOR THIS WORK, "ROUS REMARK 999 SARCOMA VIRUS SCHMIDT-RUPPIN B", COMPARED TO "POL-RSVP" REMARK 999 SEQUENCE DIFFERS AT TWO POSITIONS WITH THE CONSERVATIVE REMARK 999 AMINO ACID RESIDUE DIFFERENCES NOTED (VAL->ALA 101 & REMARK 999 ARG->LYS 166). DBREF 1CXU A 52 207 UNP P03354 POL_RSVP 624 779 SEQADV 1CXU PRO A 48 UNP P03354 INSERTION SEQADV 1CXU LEU A 49 UNP P03354 INSERTION SEQADV 1CXU ARG A 50 UNP P03354 INSERTION SEQADV 1CXU GLU A 51 UNP P03354 INSERTION SEQADV 1CXU GLY A 52 UNP P03354 PRO 624 CONFLICT SEQADV 1CXU ALA A 101 UNP P03354 VAL 673 SEE REMARK 999 SEQADV 1CXU LYS A 166 UNP P03354 ARG 738 SEE REMARK 999 SEQADV 1CXU ASN A 208 UNP P03354 INSERTION SEQADV 1CXU LEU A 209 UNP P03354 INSERTION SEQRES 1 A 162 PRO LEU ARG GLU GLY ARG GLY LEU GLY PRO LEU GLN ILE SEQRES 2 A 162 TRP GLN THR ASP PHE THR LEU GLU PRO ARG MET ALA PRO SEQRES 3 A 162 ARG SER TRP LEU ALA VAL THR VAL ASP THR ALA SER SER SEQRES 4 A 162 ALA ILE VAL VAL THR GLN HIS GLY ARG VAL THR SER VAL SEQRES 5 A 162 ALA ALA GLN HIS HIS TRP ALA THR ALA ILE ALA VAL LEU SEQRES 6 A 162 GLY ARG PRO LYS ALA ILE LYS THR ASP ASN GLY SER CYS SEQRES 7 A 162 PHE THR SER LYS SER THR ARG GLU TRP LEU ALA ARG TRP SEQRES 8 A 162 GLY ILE ALA HIS THR THR GLY ILE PRO GLY ASN SER GLN SEQRES 9 A 162 GLY GLN ALA MET VAL GLU ARG ALA ASN ARG LEU LEU LYS SEQRES 10 A 162 ASP LYS ILE ARG VAL LEU ALA GLU GLY ASP GLY PHE MET SEQRES 11 A 162 LYS ARG ILE PRO THR SER LYS GLN GLY GLU LEU LEU ALA SEQRES 12 A 162 LYS ALA MET TYR ALA LEU ASN HIS PHE GLU ARG GLY GLU SEQRES 13 A 162 ASN THR LYS THR ASN LEU HET CIT A 300 13 HET GOL A 299 6 HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CIT C6 H8 O7 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *203(H2 O) HELIX 1 1 PRO A 69 MET A 71 5 3 HELIX 2 2 SER A 98 LEU A 112 1 15 HELIX 3 3 SER A 124 THR A 127 1 4 HELIX 4 4 LYS A 129 TRP A 138 1 10 HELIX 5 5 ALA A 154 ASP A 174 1 21 HELIX 6 6 THR A 182 ASN A 197 1 16 SHEET 1 A 5 ILE A 88 HIS A 93 0 SHEET 2 A 5 TRP A 76 ASP A 82 -1 N THR A 80 O VAL A 89 SHEET 3 A 5 ILE A 60 LEU A 67 -1 N THR A 66 O LEU A 77 SHEET 4 A 5 ALA A 117 LYS A 119 1 N ALA A 117 O TRP A 61 SHEET 5 A 5 ALA A 141 THR A 143 1 N ALA A 141 O ILE A 118 CISPEP 1 ALA A 72 PRO A 73 0 3.50 SITE 1 ACT 3 ASP A 64 ASP A 121 GLU A 157 SITE 1 AC1 12 ARG A 132 ARG A 179 PRO A 181 THR A 182 SITE 2 AC1 12 SER A 183 HOH A 602 HOH A 607 HOH A 608 SITE 3 AC1 12 HOH A 629 HOH A 641 HOH A 644 HOH A 688 SITE 1 AC2 6 VAL A 90 THR A 91 THR A 107 MET A 193 SITE 2 AC2 6 HOH A 445 HOH A 466 CRYST1 66.177 66.177 78.730 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012702 0.00000