HEADER ELECTRON TRANSPORT PROTEIN (CYTOCHROME) 09-MAY-95 1CYJ TITLE CYTOCHROME C6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME C553 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 STRAIN: CC124; SOURCE 5 ORGANELLE: CHLOROPLAST KEYWDS PHOTOSYNTHESIS, CHLAMYDOMONAS, ELECTRON TRANSPORT PROTEIN KEYWDS 2 (CYTOCHROME) EXPDTA X-RAY DIFFRACTION AUTHOR C.A.KERFELD,T.O.YEATES REVDAT 5 10-MAR-21 1CYJ 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 HETSYN FORMUL LINK ATOM REVDAT 4 16-NOV-11 1CYJ 1 VERSN HETATM REVDAT 3 24-FEB-09 1CYJ 1 VERSN REVDAT 2 01-APR-03 1CYJ 1 JRNL REVDAT 1 29-JAN-96 1CYJ 0 JRNL AUTH C.A.KERFELD,H.P.ANWAR,R.INTERRANTE,S.MERCHANT,T.O.YEATES JRNL TITL THE STRUCTURE OF CHLOROPLAST CYTOCHROME C6 AT 1.9 A JRNL TITL 2 RESOLUTION: EVIDENCE FOR FUNCTIONAL OLIGOMERIZATION. JRNL REF J.MOL.BIOL. V. 250 627 1995 JRNL REFN ISSN 0022-2836 JRNL PMID 7623381 JRNL DOI 10.1006/JMBI.1995.0404 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.L.HILL,H.H.LI,J.SINGER,S.MERCHANT REMARK 1 TITL ISOLATION AND STRUCTURAL CHARACTERIZATION OF THE REMARK 1 TITL 2 CHLAMYDOMONAS REINHARDTII GENE FOR CYTOCHROME C6 REMARK 1 REF J.BIOL.CHEM. V. 266 15060 1991 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 684 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 72 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.665 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.500 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.000 ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 NO RESTRAINTS WERE PLACED ON CADMIUM IONS DURING REMARK 3 REFINEMENT. CONSEQUENTLY THERE ARE CLOSE CONTACTS BETWEEN REMARK 3 SOLVENT MOLECULES AND SIDE-CHAIN ATOMS INVOLVED IN CADMIUM REMARK 3 LIGATION. REMARK 3 REMARK 3 FROM 2FO-FC ELECTRON DENSITY AND ITS PROXIMITY TO SOLVENT REMARK 3 MOLECULES, THE ATOM AT POSITION 422 APPEARS TO BE AN ION. REMARK 3 HOWEVER SINCE IT DID NOT REFINE SATISFACTORILY AS A CADMIUM REMARK 3 ION IT WAS MODELLED AS SOLVENT, RESULTING IN CLOSE REMARK 3 INTERMOLECULAR CONTACTS WITH SOLVENT MOLECULES 456 AND 469. REMARK 4 REMARK 4 1CYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-93 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS, MSC REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5709 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 57.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 40.80000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 40.80000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 40.80000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 40.80000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 40.80000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 40.80000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 40.80000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 40.80000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 40.80000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 40.80000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 40.80000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 40.80000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 40.80000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 40.80000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 40.80000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 40.80000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 40.80000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 40.80000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 40.80000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 40.80000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 40.80000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 40.80000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 40.80000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 40.80000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 40.80000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 40.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 90 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 422 O HOH A 469 1.91 REMARK 500 O HOH A 422 O HOH A 456 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 18 CG HIS A 18 CD2 0.061 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 57 109.20 -170.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 301 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 2 OD1 REMARK 620 2 ASP A 2 OD2 49.0 REMARK 620 3 GLU A 47 OE2 136.9 90.1 REMARK 620 4 HOH A 424 O 96.6 109.7 112.1 REMARK 620 5 HOH A 428 O 92.4 124.2 103.5 113.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 200 NA 89.2 REMARK 620 3 HEC A 200 NB 86.7 88.9 REMARK 620 4 HEC A 200 NC 94.9 175.4 89.2 REMARK 620 5 HEC A 200 ND 91.2 91.1 177.9 91.0 REMARK 620 6 MET A 60 SD 172.1 83.0 92.8 93.0 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 300 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD1 REMARK 620 2 ASP A 41 OD2 53.5 REMARK 620 3 GLU A 71 OE1 76.6 123.6 REMARK 620 4 GLU A 71 OE2 121.1 173.9 53.8 REMARK 620 5 HOH A 421 O 89.6 88.1 118.9 88.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 54 OE2 REMARK 620 2 GLU A 54 OE1 46.9 REMARK 620 3 GLU A 69 OE2 85.8 129.6 REMARK 620 4 GLU A 69 OE1 79.5 121.3 45.4 REMARK 620 5 HOH A 403 O 110.1 101.8 112.0 72.2 REMARK 620 6 HOH A 412 O 140.0 101.4 108.8 137.2 98.8 REMARK 620 7 HOH A 419 O 69.1 74.2 72.6 111.8 175.3 79.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 303 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE2 REMARK 620 2 HOH A 422 O 117.0 REMARK 620 3 HOH A 456 O 119.1 42.6 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 DUE TO INCOMPLETE ELECTRON DENSITY, THE CE1, CE2, CZ AND REMARK 700 OH OF TYR 90 IS MISSING. A SHORT TWO-STRANDED REMARK 700 ANTI-PARALLEL BETA-SHEET IS FORMED BY RESIDUES 54 - 63, REMARK 700 ENCLOSING A TYPE II' TURN BETWEEN RESIDUES 57 AND 60. REMARK 700 THERE ARE TWO INTERSTRAND HYDROGEN BONDS BETWEEN RESIDUES REMARK 700 57 AND 60. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 200 DBREF 1CYJ A 1 90 UNP P08197 CYC6_CHLRE 59 148 SEQRES 1 A 90 ALA ASP LEU ALA LEU GLY ALA GLN VAL PHE ASN GLY ASN SEQRES 2 A 90 CYS ALA ALA CYS HIS MET GLY GLY ARG ASN SER VAL MET SEQRES 3 A 90 PRO GLU LYS THR LEU ASP LYS ALA ALA LEU GLU GLN TYR SEQRES 4 A 90 LEU ASP GLY GLY PHE LYS VAL GLU SER ILE ILE TYR GLN SEQRES 5 A 90 VAL GLU ASN GLY LYS GLY ALA MET PRO ALA TRP ALA ASP SEQRES 6 A 90 ARG LEU SER GLU GLU GLU ILE GLN ALA VAL ALA GLU TYR SEQRES 7 A 90 VAL PHE LYS GLN ALA THR ASP ALA ALA TRP LYS TYR HET CD A 300 1 HET CD A 301 1 HET CD A 302 1 HET CD A 303 1 HET HEC A 200 43 HETNAM CD CADMIUM ION HETNAM HEC HEME C FORMUL 2 CD 4(CD 2+) FORMUL 6 HEC C34 H34 FE N4 O4 FORMUL 7 HOH *72(H2 O) HELIX 1 1 LEU A 3 ASN A 13 1 11 HELIX 2 2 LYS A 33 TYR A 39 1 7 HELIX 3 3 VAL A 46 ASN A 55 1 10 HELIX 4 4 GLU A 69 ASP A 85 1 17 LINK SG CYS A 14 CAB HEC A 200 1555 1555 1.79 LINK SG CYS A 17 CAC HEC A 200 1555 1555 1.76 LINK OD1 ASP A 2 CD CD A 301 1555 1555 2.86 LINK OD2 ASP A 2 CD CD A 301 1555 1555 2.26 LINK NE2 HIS A 18 FE HEC A 200 1555 1555 1.90 LINK OD1 ASP A 41 CD CD A 300 22445 1555 2.29 LINK OD2 ASP A 41 CD CD A 300 22445 1555 2.53 LINK OE2 GLU A 47 CD CD A 301 5456 1555 2.09 LINK OE2 GLU A 54 CD CD A 302 1555 1555 2.66 LINK OE1 GLU A 54 CD CD A 302 1555 1555 2.86 LINK SD MET A 60 FE HEC A 200 1555 1555 2.39 LINK OE2 GLU A 69 CD CD A 302 1555 1555 2.62 LINK OE1 GLU A 69 CD CD A 302 1555 1555 3.01 LINK OE2 GLU A 70 CD CD A 303 9546 1555 2.93 LINK OE1 GLU A 71 CD CD A 300 1555 1555 2.46 LINK OE2 GLU A 71 CD CD A 300 1555 1555 2.41 LINK CD CD A 300 O HOH A 421 1555 22445 1.80 LINK CD CD A 301 O HOH A 424 1555 1555 2.06 LINK CD CD A 301 O HOH A 428 1555 5456 2.23 LINK CD CD A 302 O HOH A 403 1555 1555 1.89 LINK CD CD A 302 O HOH A 412 1555 18445 2.09 LINK CD CD A 302 O HOH A 419 1555 1555 1.93 LINK CD CD A 303 O HOH A 422 1555 1555 1.79 LINK CD CD A 303 O HOH A 456 1555 1555 2.84 SITE 1 AC1 3 ASP A 41 GLU A 71 HOH A 421 SITE 1 AC2 4 ASP A 2 GLU A 47 HOH A 424 HOH A 428 SITE 1 AC3 5 GLU A 54 GLU A 69 HOH A 403 HOH A 412 SITE 2 AC3 5 HOH A 419 SITE 1 AC4 4 GLU A 47 GLU A 70 HOH A 422 HOH A 456 SITE 1 AC5 15 CYS A 14 CYS A 17 HIS A 18 ASN A 23 SITE 2 AC5 15 VAL A 25 LYS A 29 THR A 30 ALA A 35 SITE 3 AC5 15 TYR A 39 LEU A 40 GLN A 52 LYS A 57 SITE 4 AC5 15 ALA A 59 MET A 60 HOH A 450 CRYST1 81.600 81.600 81.600 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012255 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012255 0.00000