data_1CYT # _entry.id 1CYT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1CYT WWPDB D_1000172607 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 1980-09-16 _pdbx_database_PDB_obs_spr.pdb_id 3CYT _pdbx_database_PDB_obs_spr.replace_pdb_id 1CYT _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1CYT _pdbx_database_status.recvd_initial_deposition_date 1976-09-01 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Swanson, R.' 1 'Trus, B.L.' 2 'Mandel, N.' 3 'Mandel, G.' 4 'Kallai, O.B.' 5 'Dickerson, R.E.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Tuna Cytochrome C at 2.0 Angstroms Resolution, I.Ferricytochrome Structure Analysis' J.Biol.Chem. 252 759 ? 1977 JBCHA3 US 0021-9258 071 ? ? ? 1 'The Structure of Ferrocytochrome C at 2.45 Angstroms Resolution' J.Biol.Chem. 248 5234 ? 1973 JBCHA3 US 0021-9258 071 ? ? ? 2 'Tuna Cytochrome C at 2.0 Angstroms Resolution, II.Ferrocytochrome Structure Analaysis' J.Biol.Chem. 252 776 ? 1977 JBCHA3 US 0021-9258 071 ? ? ? 3 ? 'Atlas of Macromolecular Structure on Microfiche' ? 100 ? 1976 ? ? 0-917934-01-6 434 'Tracor Jitco Inc.,Rockville,Md.' ? ? 4 ? 'Atlas of Macromolecular Structure on Microfiche' ? 105 ? 1976 ? ? 0-917934-01-6 434 'Tracor Jitco Inc.,Rockville,Md.' ? ? 5 ? 'Atlas of Protein Sequence and Structure,Supplement 2' 5 39 ? 1976 ? ? 0-912466-05-7 435 'National Biomedical Research Foundation, Silver Spring,Md.' ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Swanson, R.' 1 primary 'Trus, B.L.' 2 primary 'Mandel, N.' 3 primary 'Mandel, G.' 4 primary 'Kallai, O.B.' 5 primary 'Dickerson, R.E.' 6 1 'Takano, T.' 7 1 'Kallai, O.B.' 8 1 'Swanson, R.' 9 1 'Dickerson, R.E.' 10 2 'Takano, T.' 11 2 'Trus, B.L.' 12 2 'Mandel, N.' 13 2 'Mandel, G.' 14 2 'Kallai, O.B.' 15 2 'Swanson, R.' 16 2 'Dickerson, R.E.' 17 # loop_ _citation_editor.citation_id _citation_editor.name _citation_editor.ordinal 3 'Feldmann, R.J.' 1 4 'Feldmann, R.J.' 2 5 'Dayhoff, M.O.' 3 # _cell.entry_id 1CYT _cell.length_a 74.510 _cell.length_b 74.510 _cell.length_c 36.310 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1CYT _symmetry.space_group_name_H-M 'P 43' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ACETYL GROUP' 11416.114 2 ? ? ? ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 2 ? ? ? ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 ASP n 1 4 VAL n 1 5 ALA n 1 6 LYS n 1 7 GLY n 1 8 LYS n 1 9 LYS n 1 10 THR n 1 11 PHE n 1 12 VAL n 1 13 GLN n 1 14 LYS n 1 15 CYS n 1 16 ALA n 1 17 GLN n 1 18 CYS n 1 19 HIS n 1 20 THR n 1 21 VAL n 1 22 GLU n 1 23 ASN n 1 24 GLY n 1 25 GLY n 1 26 LYS n 1 27 HIS n 1 28 LYS n 1 29 VAL n 1 30 GLY n 1 31 PRO n 1 32 ASN n 1 33 LEU n 1 34 TRP n 1 35 GLY n 1 36 LEU n 1 37 PHE n 1 38 GLY n 1 39 ARG n 1 40 LYS n 1 41 THR n 1 42 GLY n 1 43 GLN n 1 44 ALA n 1 45 GLU n 1 46 GLY n 1 47 TYR n 1 48 SER n 1 49 TYR n 1 50 THR n 1 51 ASP n 1 52 ALA n 1 53 ASN n 1 54 LYS n 1 55 SER n 1 56 LYS n 1 57 GLY n 1 58 ILE n 1 59 VAL n 1 60 TRP n 1 61 ASN n 1 62 ASN n 1 63 ASP n 1 64 THR n 1 65 LEU n 1 66 MET n 1 67 GLU n 1 68 TYR n 1 69 LEU n 1 70 GLU n 1 71 ASN n 1 72 PRO n 1 73 LYS n 1 74 LYS n 1 75 TYR n 1 76 ILE n 1 77 PRO n 1 78 GLY n 1 79 THR n 1 80 LYS n 1 81 MET n 1 82 ILE n 1 83 PHE n 1 84 ALA n 1 85 GLY n 1 86 ILE n 1 87 LYS n 1 88 LYS n 1 89 LYS n 1 90 GLY n 1 91 GLU n 1 92 ARG n 1 93 GLN n 1 94 ASP n 1 95 LEU n 1 96 VAL n 1 97 ALA n 1 98 TYR n 1 99 LEU n 1 100 LYS n 1 101 SER n 1 102 ALA n 1 103 THR n 1 104 SER n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1CYT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.21 _exptl_crystal.density_percent_sol 44.27 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1CYT _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1606 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 86 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1692 _refine_hist.d_res_high . _refine_hist.d_res_low . _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function o_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? o_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? o_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? o_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? o_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? o_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct_ncs_oper.id 1 _struct_ncs_oper.code generate _struct_ncs_oper.details ? _struct_ncs_oper.matrix[1][1] .418450 _struct_ncs_oper.matrix[1][2] .907990 _struct_ncs_oper.matrix[1][3] .021520 _struct_ncs_oper.matrix[2][1] .908170 _struct_ncs_oper.matrix[2][2] -.418600 _struct_ncs_oper.matrix[2][3] .002880 _struct_ncs_oper.matrix[3][1] .011620 _struct_ncs_oper.matrix[3][2] .018340 _struct_ncs_oper.matrix[3][3] -.999760 _struct_ncs_oper.vector[1] -50.254000 _struct_ncs_oper.vector[2] -17.993000 _struct_ncs_oper.vector[3] 34.745000 # _struct.entry_id 1CYT _struct.title 'TUNA CYTOCHROME $C AT 2.0 ANGSTROMS RESOLUTION, $I.FERRICYTOCHROME STRUCTURE ANALYSIS' _struct.pdbx_descriptor 'PROTEIN, PROTOPORPHYRIN IX CONTAINING FE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1CYT _struct_keywords.pdbx_keywords 'ELECTRON TRANSPORT' _struct_keywords.text 'ELECTRON TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1O ASP A 3 ? CYS A 15 ? ASP O 2 CYS O 14 1 ? 13 HELX_P HELX_P2 H2O THR A 50 ? LYS A 56 ? THR O 49 LYS O 55 1 ? 7 HELX_P HELX_P3 H3O ASN A 61 ? ASN A 71 ? ASN O 60 ASN O 70 1 ? 11 HELX_P HELX_P4 H4O ASN A 71 ? ILE A 76 ? ASN O 70 ILE O 75 1 ? 6 HELX_P HELX_P5 H5O LYS A 88 ? SER A 104 ? LYS O 87 SER O 103 1 ? 17 HELX_P HELX_P6 H1I ASP B 3 ? CYS B 15 ? ASP I 2 CYS I 14 1 ? 13 HELX_P HELX_P7 H2I THR B 50 ? LYS B 56 ? THR I 49 LYS I 55 1 ? 7 HELX_P HELX_P8 H3I ASN B 61 ? ASN B 71 ? ASN I 60 ASN I 70 1 ? 11 HELX_P HELX_P9 H4I ASN B 71 ? ILE B 76 ? ASN I 70 ILE I 75 1 ? 6 HELX_P HELX_P10 H5I LYS B 88 ? SER B 104 ? LYS I 87 SER I 103 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 1CYT _database_PDB_matrix.origx[1][1] .013421 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] .013421 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] .027541 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 1CYT _atom_sites.fract_transf_matrix[1][1] .013421 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] .013421 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] .027541 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C FE N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE O . n A 1 2 GLY 2 1 1 GLY GLY O . n A 1 3 ASP 3 2 2 ASP ASP O . n A 1 4 VAL 4 3 3 VAL VAL O . n A 1 5 ALA 5 4 4 ALA ALA O . n A 1 6 LYS 6 5 5 LYS LYS O . n A 1 7 GLY 7 6 6 GLY GLY O . n A 1 8 LYS 8 7 7 LYS LYS O . n A 1 9 LYS 9 8 8 LYS LYS O . n A 1 10 THR 10 9 9 THR THR O . n A 1 11 PHE 11 10 10 PHE PHE O . n A 1 12 VAL 12 11 11 VAL VAL O . n A 1 13 GLN 13 12 12 GLN GLN O . n A 1 14 LYS 14 13 13 LYS LYS O . n A 1 15 CYS 15 14 14 CYS CYS O . n A 1 16 ALA 16 15 15 ALA ALA O . n A 1 17 GLN 17 16 16 GLN GLN O . n A 1 18 CYS 18 17 17 CYS CYS O . n A 1 19 HIS 19 18 18 HIS HIS O . n A 1 20 THR 20 19 19 THR THR O . n A 1 21 VAL 21 20 20 VAL VAL O . n A 1 22 GLU 22 21 21 GLU GLU O . n A 1 23 ASN 23 22 22 ASN ASN O . n A 1 24 GLY 24 23 23 GLY GLY O . n A 1 25 GLY 25 24 24 GLY GLY O . n A 1 26 LYS 26 25 25 LYS LYS O . n A 1 27 HIS 27 26 26 HIS HIS O . n A 1 28 LYS 28 27 27 LYS LYS O . n A 1 29 VAL 29 28 28 VAL VAL O . n A 1 30 GLY 30 29 29 GLY GLY O . n A 1 31 PRO 31 30 30 PRO PRO O . n A 1 32 ASN 32 31 31 ASN ASN O . n A 1 33 LEU 33 32 32 LEU LEU O . n A 1 34 TRP 34 33 33 TRP TRP O . n A 1 35 GLY 35 34 34 GLY GLY O . n A 1 36 LEU 36 35 35 LEU LEU O . n A 1 37 PHE 37 36 36 PHE PHE O . n A 1 38 GLY 38 37 37 GLY GLY O . n A 1 39 ARG 39 38 38 ARG ARG O . n A 1 40 LYS 40 39 39 LYS LYS O . n A 1 41 THR 41 40 40 THR THR O . n A 1 42 GLY 42 41 41 GLY GLY O . n A 1 43 GLN 43 42 42 GLN GLN O . n A 1 44 ALA 44 43 43 ALA ALA O . n A 1 45 GLU 45 44 44 GLU GLU O . n A 1 46 GLY 46 45 45 GLY GLY O . n A 1 47 TYR 47 46 46 TYR TYR O . n A 1 48 SER 48 47 47 SER SER O . n A 1 49 TYR 49 48 48 TYR TYR O . n A 1 50 THR 50 49 49 THR THR O . n A 1 51 ASP 51 50 50 ASP ASP O . n A 1 52 ALA 52 51 51 ALA ALA O . n A 1 53 ASN 53 52 52 ASN ASN O . n A 1 54 LYS 54 53 53 LYS LYS O . n A 1 55 SER 55 54 54 SER SER O . n A 1 56 LYS 56 55 55 LYS LYS O . n A 1 57 GLY 57 56 56 GLY GLY O . n A 1 58 ILE 58 57 57 ILE ILE O . n A 1 59 VAL 59 58 58 VAL VAL O . n A 1 60 TRP 60 59 59 TRP TRP O . n A 1 61 ASN 61 60 60 ASN ASN O . n A 1 62 ASN 62 61 61 ASN ASN O . n A 1 63 ASP 63 62 62 ASP ASP O . n A 1 64 THR 64 63 63 THR THR O . n A 1 65 LEU 65 64 64 LEU LEU O . n A 1 66 MET 66 65 65 MET MET O . n A 1 67 GLU 67 66 66 GLU GLU O . n A 1 68 TYR 68 67 67 TYR TYR O . n A 1 69 LEU 69 68 68 LEU LEU O . n A 1 70 GLU 70 69 69 GLU GLU O . n A 1 71 ASN 71 70 70 ASN ASN O . n A 1 72 PRO 72 71 71 PRO PRO O . n A 1 73 LYS 73 72 72 LYS LYS O . n A 1 74 LYS 74 73 73 LYS LYS O . n A 1 75 TYR 75 74 74 TYR TYR O . n A 1 76 ILE 76 75 75 ILE ILE O . n A 1 77 PRO 77 76 76 PRO PRO O . n A 1 78 GLY 78 77 77 GLY GLY O . n A 1 79 THR 79 78 78 THR THR O . n A 1 80 LYS 80 79 79 LYS LYS O . n A 1 81 MET 81 80 80 MET MET O . n A 1 82 ILE 82 81 81 ILE ILE O . n A 1 83 PHE 83 82 82 PHE PHE O . n A 1 84 ALA 84 83 83 ALA ALA O . n A 1 85 GLY 85 84 84 GLY GLY O . n A 1 86 ILE 86 85 85 ILE ILE O . n A 1 87 LYS 87 86 86 LYS LYS O . n A 1 88 LYS 88 87 87 LYS LYS O . n A 1 89 LYS 89 88 88 LYS LYS O . n A 1 90 GLY 90 89 89 GLY GLY O . n A 1 91 GLU 91 90 90 GLU GLU O . n A 1 92 ARG 92 91 91 ARG ARG O . n A 1 93 GLN 93 92 92 GLN GLN O . n A 1 94 ASP 94 93 93 ASP ASP O . n A 1 95 LEU 95 94 94 LEU LEU O . n A 1 96 VAL 96 95 95 VAL VAL O . n A 1 97 ALA 97 96 96 ALA ALA O . n A 1 98 TYR 98 97 97 TYR TYR O . n A 1 99 LEU 99 98 98 LEU LEU O . n A 1 100 LYS 100 99 99 LYS LYS O . n A 1 101 SER 101 100 100 SER SER O . n A 1 102 ALA 102 101 101 ALA ALA O . n A 1 103 THR 103 102 102 THR THR O . n A 1 104 SER 104 103 103 SER SER O . n B 1 1 ACE 1 0 0 ACE ACE I . n B 1 2 GLY 2 1 1 GLY GLY I . n B 1 3 ASP 3 2 2 ASP ASP I . n B 1 4 VAL 4 3 3 VAL VAL I . n B 1 5 ALA 5 4 4 ALA ALA I . n B 1 6 LYS 6 5 5 LYS LYS I . n B 1 7 GLY 7 6 6 GLY GLY I . n B 1 8 LYS 8 7 7 LYS LYS I . n B 1 9 LYS 9 8 8 LYS LYS I . n B 1 10 THR 10 9 9 THR THR I . n B 1 11 PHE 11 10 10 PHE PHE I . n B 1 12 VAL 12 11 11 VAL VAL I . n B 1 13 GLN 13 12 12 GLN GLN I . n B 1 14 LYS 14 13 13 LYS LYS I . n B 1 15 CYS 15 14 14 CYS CYS I . n B 1 16 ALA 16 15 15 ALA ALA I . n B 1 17 GLN 17 16 16 GLN GLN I . n B 1 18 CYS 18 17 17 CYS CYS I . n B 1 19 HIS 19 18 18 HIS HIS I . n B 1 20 THR 20 19 19 THR THR I . n B 1 21 VAL 21 20 20 VAL VAL I . n B 1 22 GLU 22 21 21 GLU GLU I . n B 1 23 ASN 23 22 22 ASN ASN I . n B 1 24 GLY 24 23 23 GLY GLY I . n B 1 25 GLY 25 24 24 GLY GLY I . n B 1 26 LYS 26 25 25 LYS LYS I . n B 1 27 HIS 27 26 26 HIS HIS I . n B 1 28 LYS 28 27 27 LYS LYS I . n B 1 29 VAL 29 28 28 VAL VAL I . n B 1 30 GLY 30 29 29 GLY GLY I . n B 1 31 PRO 31 30 30 PRO PRO I . n B 1 32 ASN 32 31 31 ASN ASN I . n B 1 33 LEU 33 32 32 LEU LEU I . n B 1 34 TRP 34 33 33 TRP TRP I . n B 1 35 GLY 35 34 34 GLY GLY I . n B 1 36 LEU 36 35 35 LEU LEU I . n B 1 37 PHE 37 36 36 PHE PHE I . n B 1 38 GLY 38 37 37 GLY GLY I . n B 1 39 ARG 39 38 38 ARG ARG I . n B 1 40 LYS 40 39 39 LYS LYS I . n B 1 41 THR 41 40 40 THR THR I . n B 1 42 GLY 42 41 41 GLY GLY I . n B 1 43 GLN 43 42 42 GLN GLN I . n B 1 44 ALA 44 43 43 ALA ALA I . n B 1 45 GLU 45 44 44 GLU GLU I . n B 1 46 GLY 46 45 45 GLY GLY I . n B 1 47 TYR 47 46 46 TYR TYR I . n B 1 48 SER 48 47 47 SER SER I . n B 1 49 TYR 49 48 48 TYR TYR I . n B 1 50 THR 50 49 49 THR THR I . n B 1 51 ASP 51 50 50 ASP ASP I . n B 1 52 ALA 52 51 51 ALA ALA I . n B 1 53 ASN 53 52 52 ASN ASN I . n B 1 54 LYS 54 53 53 LYS LYS I . n B 1 55 SER 55 54 54 SER SER I . n B 1 56 LYS 56 55 55 LYS LYS I . n B 1 57 GLY 57 56 56 GLY GLY I . n B 1 58 ILE 58 57 57 ILE ILE I . n B 1 59 VAL 59 58 58 VAL VAL I . n B 1 60 TRP 60 59 59 TRP TRP I . n B 1 61 ASN 61 60 60 ASN ASN I . n B 1 62 ASN 62 61 61 ASN ASN I . n B 1 63 ASP 63 62 62 ASP ASP I . n B 1 64 THR 64 63 63 THR THR I . n B 1 65 LEU 65 64 64 LEU LEU I . n B 1 66 MET 66 65 65 MET MET I . n B 1 67 GLU 67 66 66 GLU GLU I . n B 1 68 TYR 68 67 67 TYR TYR I . n B 1 69 LEU 69 68 68 LEU LEU I . n B 1 70 GLU 70 69 69 GLU GLU I . n B 1 71 ASN 71 70 70 ASN ASN I . n B 1 72 PRO 72 71 71 PRO PRO I . n B 1 73 LYS 73 72 72 LYS LYS I . n B 1 74 LYS 74 73 73 LYS LYS I . n B 1 75 TYR 75 74 74 TYR TYR I . n B 1 76 ILE 76 75 75 ILE ILE I . n B 1 77 PRO 77 76 76 PRO PRO I . n B 1 78 GLY 78 77 77 GLY GLY I . n B 1 79 THR 79 78 78 THR THR I . n B 1 80 LYS 80 79 79 LYS LYS I . n B 1 81 MET 81 80 80 MET MET I . n B 1 82 ILE 82 81 81 ILE ILE I . n B 1 83 PHE 83 82 82 PHE PHE I . n B 1 84 ALA 84 83 83 ALA ALA I . n B 1 85 GLY 85 84 84 GLY GLY I . n B 1 86 ILE 86 85 85 ILE ILE I . n B 1 87 LYS 87 86 86 LYS LYS I . n B 1 88 LYS 88 87 87 LYS LYS I . n B 1 89 LYS 89 88 88 LYS LYS I . n B 1 90 GLY 90 89 89 GLY GLY I . n B 1 91 GLU 91 90 90 GLU GLU I . n B 1 92 ARG 92 91 91 ARG ARG I . n B 1 93 GLN 93 92 92 GLN GLN I . n B 1 94 ASP 94 93 93 ASP ASP I . n B 1 95 LEU 95 94 94 LEU LEU I . n B 1 96 VAL 96 95 95 VAL VAL I . n B 1 97 ALA 97 96 96 ALA ALA I . n B 1 98 TYR 98 97 97 TYR TYR I . n B 1 99 LEU 99 98 98 LEU LEU I . n B 1 100 LYS 100 99 99 LYS LYS I . n B 1 101 SER 101 100 100 SER SER I . n B 1 102 ALA 102 101 101 ALA ALA I . n B 1 103 THR 103 102 102 THR THR I . n B 1 104 SER 104 103 103 SER SER I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM 1 1 1 HEM HEM O . D 2 HEM 1 1 1 HEM HEM I . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 ? 2 'Structure model' 1 1 1980-09-16 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DESCENTS refinement 'TO MINIMIZE THE SUM OF 1CY SQUARES OF DEVIATIONS FROM IDEAL PARAMETERS. AROMATIC SIDE 1CYT CHAINS HAVE BEEN CHECKED USING IN-PLANE' ? 1 PERPENDICULAR refinement '1CYT SECTIONS. COORDINATES WILL BE SUBJECTED LATER TO REAL- 1CYT SPACE REFINEMENT' ? 2 INCLUDING refinement 'USE OF CALCULATED PHASES. THESE 1CYT PRESENT COORDINATES HENCE ARE PROVISIONAL' ? 3 ALTHOUGH refinement '1CYT TRUSTWORTHY AT THEIR LEVEL OF REFINEMENT. 1CYT' ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 SG I CYS 17 ? ? CAC I HEM 1 ? ? 1.73 2 1 SG I CYS 14 ? ? CAB I HEM 1 ? ? 1.74 3 1 SG O CYS 14 ? ? CAB O HEM 1 ? ? 1.77 4 1 SG O CYS 17 ? ? CAC O HEM 1 ? ? 1.78 5 1 NE2 I HIS 18 ? ? FE I HEM 1 ? ? 1.98 6 1 NE2 O HIS 18 ? ? FE O HEM 1 ? ? 1.99 7 1 OH I TYR 48 ? ? O1A I HEM 1 ? ? 1.99 8 1 OD1 I ASN 60 ? ? OG1 I THR 63 ? ? 2.03 9 1 OE2 I GLU 69 ? ? NH2 I ARG 91 ? ? 2.04 10 1 CB I GLU 69 ? ? NH1 I ARG 91 ? ? 2.08 11 1 NZ O LYS 55 ? ? O O TYR 74 ? ? 2.14 12 1 CG I LYS 87 ? ? OE2 I GLU 90 ? ? 2.15 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OG O SER 103 ? ? 1_555 ND2 I ASN 61 ? ? 1_545 1.46 2 1 NZ O LYS 55 ? ? 1_555 O O ILE 81 ? ? 4_555 1.80 3 1 CE O LYS 55 ? ? 1_555 O O ILE 81 ? ? 4_555 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG O HIS 26 ? ? CD2 O HIS 26 ? ? 1.430 1.354 0.076 0.009 N 2 1 NE1 O TRP 33 ? ? CE2 O TRP 33 ? ? 1.289 1.371 -0.082 0.013 N 3 1 NE1 O TRP 59 ? ? CE2 O TRP 59 ? ? 1.270 1.371 -0.101 0.013 N 4 1 C O TRP 59 ? ? N O ASN 60 ? ? 1.477 1.336 0.141 0.023 Y 5 1 CG O TYR 67 ? ? CD1 O TYR 67 ? ? 1.301 1.387 -0.086 0.013 N 6 1 CE2 O TYR 74 ? ? CD2 O TYR 74 ? ? 1.486 1.389 0.097 0.015 N 7 1 C O TYR 74 ? ? N O ILE 75 ? ? 1.481 1.336 0.145 0.023 Y 8 1 CA I CYS 17 ? ? CB I CYS 17 ? ? 1.383 1.526 -0.143 0.013 N 9 1 CB I HIS 18 ? ? CG I HIS 18 ? ? 1.363 1.492 -0.129 0.016 N 10 1 CG I HIS 18 ? ? CD2 I HIS 18 ? ? 1.422 1.354 0.068 0.009 N 11 1 C I HIS 18 ? ? N I THR 19 ? ? 1.482 1.336 0.146 0.023 Y 12 1 CG I HIS 26 ? ? CD2 I HIS 26 ? ? 1.421 1.354 0.067 0.009 N 13 1 CB I TRP 33 ? ? CG I TRP 33 ? ? 1.607 1.498 0.109 0.018 N 14 1 CB I PHE 36 ? ? CG I PHE 36 ? ? 1.404 1.509 -0.105 0.017 N 15 1 N I GLY 37 ? ? CA I GLY 37 ? ? 1.354 1.456 -0.102 0.015 N 16 1 N I GLY 41 ? ? CA I GLY 41 ? ? 1.572 1.456 0.116 0.015 N 17 1 NE1 I TRP 59 ? ? CE2 I TRP 59 ? ? 1.456 1.371 0.085 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O O HIS 18 ? ? C O HIS 18 ? ? N O THR 19 ? ? 134.88 122.70 12.18 1.60 Y 2 1 CB O HIS 26 ? ? CG O HIS 26 ? ? CD2 O HIS 26 ? ? 117.81 129.70 -11.89 1.60 N 3 1 CB O TYR 48 ? ? CG O TYR 48 ? ? CD1 O TYR 48 ? ? 114.75 121.00 -6.25 0.60 N 4 1 CG O TYR 48 ? ? CD2 O TYR 48 ? ? CE2 O TYR 48 ? ? 116.09 121.30 -5.21 0.80 N 5 1 CG O MET 65 ? ? SD O MET 65 ? ? CE O MET 65 ? ? 115.40 100.20 15.20 1.60 N 6 1 CG O TYR 74 ? ? CD2 O TYR 74 ? ? CE2 O TYR 74 ? ? 114.90 121.30 -6.40 0.80 N 7 1 CG O MET 80 ? ? SD O MET 80 ? ? CE O MET 80 ? ? 115.68 100.20 15.48 1.60 N 8 1 CB O PHE 82 ? ? CG O PHE 82 ? ? CD1 O PHE 82 ? ? 114.70 120.80 -6.10 0.70 N 9 1 CB I TYR 46 ? ? CG I TYR 46 ? ? CD1 I TYR 46 ? ? 117.32 121.00 -3.68 0.60 N 10 1 O I TYR 46 ? ? C I TYR 46 ? ? N I SER 47 ? ? 133.59 122.70 10.89 1.60 Y 11 1 CB I TYR 48 ? ? CG I TYR 48 ? ? CD2 I TYR 48 ? ? 116.51 121.00 -4.49 0.60 N 12 1 CG I MET 65 ? ? SD I MET 65 ? ? CE I MET 65 ? ? 115.58 100.20 15.38 1.60 N 13 1 CG I MET 80 ? ? SD I MET 80 ? ? CE I MET 80 ? ? 114.90 100.20 14.70 1.60 N 14 1 CB I TYR 97 ? ? CG I TYR 97 ? ? CD1 I TYR 97 ? ? 117.24 121.00 -3.76 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP O 2 ? ? -10.96 84.84 2 1 GLN O 12 ? ? -48.14 -82.02 3 1 LYS O 27 ? ? -94.88 -116.63 4 1 PHE O 36 ? ? -34.91 132.31 5 1 ALA O 43 ? ? -38.28 80.44 6 1 GLU O 44 ? ? -30.08 160.27 7 1 ASP O 50 ? ? -23.54 -44.45 8 1 MET O 65 ? ? -46.26 -73.67 9 1 TYR O 67 ? ? -43.23 -72.45 10 1 ILE O 75 ? ? -111.37 62.72 11 1 THR O 78 ? ? -46.31 154.82 12 1 LYS O 86 ? ? -69.01 74.67 13 1 LYS O 87 ? ? 168.65 113.93 14 1 ARG O 91 ? ? -44.14 -70.40 15 1 LYS O 99 ? ? -40.37 -79.07 16 1 ASP I 2 ? ? 154.84 64.05 17 1 VAL I 3 ? ? -42.74 -70.11 18 1 LYS I 25 ? ? -3.28 121.05 19 1 LYS I 27 ? ? -120.29 -131.19 20 1 ALA I 43 ? ? -39.76 -176.76 21 1 TYR I 46 ? ? 10.86 131.00 22 1 LYS I 55 ? ? -21.85 -66.35 23 1 GLU I 69 ? ? -49.01 -19.16 24 1 ASN I 70 ? ? -166.73 71.05 25 1 THR I 78 ? ? -39.82 154.41 26 1 ILE I 81 ? ? -69.76 63.30 27 1 GLN I 92 ? ? -46.00 -72.61 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ASN _pdbx_validate_planes.auth_asym_id I _pdbx_validate_planes.auth_seq_id 70 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.070 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'PROTOPORPHYRIN IX CONTAINING FE' _pdbx_entity_nonpoly.comp_id HEM #