HEADER TOXIN 01-SEP-99 1CZ6 TITLE SOLUTION STRUCTURE OF ANDROCTONIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (ANDROCTONIN); COMPND 3 CHAIN: A; COMPND 4 OTHER_DETAILS: SYNTHETIC SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANDROCTONUS AUSTRALIS; SOURCE 3 ORGANISM_COMMON: SAHARA SCORPION; SOURCE 4 ORGANISM_TAXID: 6858; SOURCE 5 OTHER_DETAILS: ANDROCTONUS KEYWDS BETA SHEET, TOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.MANDARD,F.VOVELLE REVDAT 5 16-FEB-22 1CZ6 1 REMARK REVDAT 4 24-FEB-09 1CZ6 1 VERSN REVDAT 3 01-APR-03 1CZ6 1 JRNL REVDAT 2 26-SEP-01 1CZ6 3 ATOM REVDAT 1 12-JAN-00 1CZ6 0 JRNL AUTH N.MANDARD,D.SY,C.MAUFRAIS,J.M.BONMATIN,P.BULET,C.HETRU, JRNL AUTH 2 F.VOVELLE JRNL TITL ANDROCTONIN, A NOVEL ANTIMICROBIAL PEPTIDE FROM SCORPION JRNL TITL 2 ANDROCTONUS AUSTRALIS: SOLUTION STRUCTURE AND MOLECULAR JRNL TITL 3 DYNAMICS SIMULATIONS IN THE PRESENCE OF A LIPID MONOLAYER. JRNL REF J.BIOMOL.STRUCT.DYN. V. 17 367 1999 JRNL REFN ISSN 0739-1102 JRNL PMID 10563585 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.EHRET-SABATIER,P.BULET REMARK 1 TITL CHARACTERIZATION OF NOVEL CYSTEIN-RICH ANTIMICROBIAL REMARK 1 TITL 2 PEPTIDES FROM SCORPION BLOOD REMARK 1 REF J.BIOL.CHEM. V. 271 29537 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.271.47.29537 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER, A.T. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1CZ6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-99. REMARK 100 THE DEPOSITION ID IS D_1000009636. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3.25 MM REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DIANA 2.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 5 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 1 CYS A 20 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 2 ARG A 1 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 2 ARG A 11 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 2 ARG A 12 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 2 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 3 ARG A 5 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 3 CYS A 10 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 3 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 3 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 3 ARG A 23 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 4 CYS A 4 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 4 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 4 ARG A 11 NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 4 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 4 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 4 CYS A 20 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 5 ARG A 1 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 5 LYS A 8 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 5 ARG A 11 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 5 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 5 CYS A 20 CA - CB - SG ANGL. DEV. = 7.2 DEGREES REMARK 500 5 ARG A 23 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 6 ARG A 1 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 6 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 6 ARG A 13 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 6 CYS A 20 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 7 ARG A 1 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 7 ARG A 5 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 7 ARG A 11 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 7 ARG A 12 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 7 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 8 ARG A 1 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 8 CYS A 4 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 8 ARG A 11 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 8 ARG A 23 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 9 ARG A 5 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 9 LYS A 8 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 9 ARG A 11 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 9 ARG A 12 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 9 ARG A 23 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 10 ARG A 1 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 10 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 10 ARG A 12 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 10 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 10 ARG A 23 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 11 ARG A 5 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 11 ARG A 11 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 11 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 11 ARG A 23 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 94 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 3 50.02 -140.41 REMARK 500 1 ASN A 22 84.34 76.20 REMARK 500 1 PRO A 24 70.47 -62.77 REMARK 500 2 ASN A 22 66.37 39.46 REMARK 500 2 PRO A 24 37.86 -78.18 REMARK 500 3 ARG A 12 -58.43 -4.60 REMARK 500 3 ARG A 13 42.58 -148.13 REMARK 500 3 ASN A 22 68.82 39.99 REMARK 500 3 PRO A 24 79.51 -59.77 REMARK 500 4 VAL A 3 -159.61 -128.38 REMARK 500 4 ARG A 12 -47.91 -24.15 REMARK 500 4 TYR A 17 -157.20 -124.07 REMARK 500 4 ASN A 22 73.18 26.84 REMARK 500 4 PRO A 24 24.69 -76.44 REMARK 500 5 SER A 2 127.18 124.30 REMARK 500 5 ARG A 12 16.83 46.82 REMARK 500 5 TYR A 17 -153.73 -119.59 REMARK 500 5 THR A 21 -52.46 -27.94 REMARK 500 5 ASN A 22 78.13 66.31 REMARK 500 5 PRO A 24 59.19 -100.19 REMARK 500 6 SER A 2 55.72 7.01 REMARK 500 6 ASN A 22 69.08 27.09 REMARK 500 7 ARG A 12 -55.33 -19.39 REMARK 500 7 TYR A 17 -160.26 -160.49 REMARK 500 7 ASN A 22 52.62 33.62 REMARK 500 8 CYS A 4 -168.12 40.03 REMARK 500 8 ARG A 12 -51.75 -23.67 REMARK 500 9 SER A 2 77.48 -101.61 REMARK 500 9 ARG A 12 -47.13 -7.16 REMARK 500 9 ASN A 22 85.74 61.53 REMARK 500 9 PRO A 24 76.54 -61.56 REMARK 500 10 ARG A 12 -49.20 -16.81 REMARK 500 10 ASN A 22 55.18 31.37 REMARK 500 10 PRO A 24 71.32 -52.09 REMARK 500 11 SER A 2 177.42 114.42 REMARK 500 11 ARG A 12 61.71 9.40 REMARK 500 11 ARG A 13 48.70 35.22 REMARK 500 11 ASN A 22 78.52 54.68 REMARK 500 11 PRO A 24 80.21 -65.15 REMARK 500 12 SER A 2 -177.20 75.02 REMARK 500 12 ARG A 12 -45.94 -29.78 REMARK 500 12 THR A 21 -69.57 -129.41 REMARK 500 13 SER A 2 -174.03 69.52 REMARK 500 13 ARG A 12 44.91 29.73 REMARK 500 13 ARG A 13 42.52 27.87 REMARK 500 13 TYR A 17 -169.57 -160.52 REMARK 500 13 ASN A 22 67.10 -106.69 REMARK 500 14 TYR A 17 -159.41 -158.40 REMARK 500 14 PRO A 24 75.35 -58.53 REMARK 500 15 SER A 2 -169.38 179.03 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 23 PRO A 24 20 146.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 1 0.31 SIDE CHAIN REMARK 500 1 ARG A 5 0.23 SIDE CHAIN REMARK 500 1 ARG A 11 0.25 SIDE CHAIN REMARK 500 1 ARG A 12 0.28 SIDE CHAIN REMARK 500 1 ARG A 13 0.31 SIDE CHAIN REMARK 500 1 ARG A 23 0.29 SIDE CHAIN REMARK 500 2 ARG A 1 0.31 SIDE CHAIN REMARK 500 2 ARG A 5 0.26 SIDE CHAIN REMARK 500 2 ARG A 11 0.19 SIDE CHAIN REMARK 500 2 ARG A 12 0.32 SIDE CHAIN REMARK 500 2 ARG A 13 0.32 SIDE CHAIN REMARK 500 2 ARG A 23 0.31 SIDE CHAIN REMARK 500 3 ARG A 1 0.30 SIDE CHAIN REMARK 500 3 ARG A 5 0.32 SIDE CHAIN REMARK 500 3 ARG A 12 0.29 SIDE CHAIN REMARK 500 3 ARG A 13 0.29 SIDE CHAIN REMARK 500 3 ARG A 23 0.20 SIDE CHAIN REMARK 500 4 ARG A 1 0.31 SIDE CHAIN REMARK 500 4 ARG A 5 0.33 SIDE CHAIN REMARK 500 4 ARG A 11 0.32 SIDE CHAIN REMARK 500 4 ARG A 12 0.31 SIDE CHAIN REMARK 500 4 ARG A 13 0.30 SIDE CHAIN REMARK 500 4 ARG A 23 0.30 SIDE CHAIN REMARK 500 5 ARG A 1 0.31 SIDE CHAIN REMARK 500 5 ARG A 5 0.32 SIDE CHAIN REMARK 500 5 ARG A 11 0.26 SIDE CHAIN REMARK 500 5 ARG A 12 0.31 SIDE CHAIN REMARK 500 5 ARG A 13 0.31 SIDE CHAIN REMARK 500 5 ARG A 23 0.31 SIDE CHAIN REMARK 500 6 ARG A 1 0.15 SIDE CHAIN REMARK 500 6 ARG A 5 0.30 SIDE CHAIN REMARK 500 6 ARG A 11 0.29 SIDE CHAIN REMARK 500 6 ARG A 12 0.32 SIDE CHAIN REMARK 500 6 ARG A 13 0.30 SIDE CHAIN REMARK 500 6 ARG A 23 0.25 SIDE CHAIN REMARK 500 7 ARG A 1 0.30 SIDE CHAIN REMARK 500 7 ARG A 5 0.25 SIDE CHAIN REMARK 500 7 ARG A 11 0.30 SIDE CHAIN REMARK 500 7 ARG A 12 0.32 SIDE CHAIN REMARK 500 7 ARG A 13 0.32 SIDE CHAIN REMARK 500 7 ARG A 23 0.23 SIDE CHAIN REMARK 500 8 ARG A 1 0.31 SIDE CHAIN REMARK 500 8 ARG A 5 0.25 SIDE CHAIN REMARK 500 8 ARG A 11 0.25 SIDE CHAIN REMARK 500 8 ARG A 12 0.29 SIDE CHAIN REMARK 500 8 ARG A 13 0.32 SIDE CHAIN REMARK 500 8 ARG A 23 0.28 SIDE CHAIN REMARK 500 9 ARG A 1 0.31 SIDE CHAIN REMARK 500 9 ARG A 5 0.28 SIDE CHAIN REMARK 500 9 ARG A 11 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 118 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1CZ6 A 1 25 UNP P56684 ANDT_ANDAU 1 25 SEQRES 1 A 25 ARG SER VAL CYS ARG GLN ILE LYS ILE CYS ARG ARG ARG SEQRES 2 A 25 GLY GLY CYS TYR TYR LYS CYS THR ASN ARG PRO TYR SHEET 1 A 2 GLN A 6 ILE A 9 0 SHEET 2 A 2 TYR A 17 CYS A 20 -1 N TYR A 17 O ILE A 9 SSBOND 1 CYS A 4 CYS A 20 1555 1555 2.02 SSBOND 2 CYS A 10 CYS A 16 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1