data_1D22 # _entry.id 1D22 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D22 pdb_00001d22 10.2210/pdb1d22/pdb RCSB DDFA15 ? ? WWPDB D_1000172627 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1991-07-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D22 _pdbx_database_status.recvd_initial_deposition_date 1990-08-08 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.-G.' 1 'Liaw, Y.-C.' 2 'Robinson, H.' 3 'Wang, A.H.-J.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Binding of the antitumor drug nogalamycin and its derivatives to DNA: structural comparison.' Biochemistry 29 10307 10316 1990 BICHAW US 0006-2960 0033 ? 2261474 10.1021/bi00497a004 1 'NMR Studies on the Binding of Antitumor Drug Nogalamycin to DNA Hexamer d(CGTACG)' 'Nucleic Acids Res.' 18 4851 4858 1990 NARHAD UK 0305-1048 0389 ? ? ? 2 'Antitumor Drug Nogalamycin Binds DNA in Both Grooves Simultaneously: Molecular Structure of Nogalamycin-DNA Complex' Biochemistry 28 9913 9918 1989 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Liaw, Y.C.' 2 ? primary 'Robinson, H.' 3 ? primary 'Wang, A.H.' 4 ? 1 'Robinson, H.' 5 ? 1 'Liaw, Y.-C.' 6 ? 1 'Van Der Marel, G.A.' 7 ? 1 'Van Boom, J.H.' 8 ? 1 'Wang, A.H.-J.' 9 ? 2 'Liaw, Y.-C.' 10 ? 2 'Gao, Y.-G.' 11 ? 2 'Robinson, H.' 12 ? 2 'Van Der Marel, G.A.' 13 ? 2 'Van Boom, J.H.' 14 ? 2 'Wang, A.H.-J.' 15 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(5CM)P*GP*TP*(AS)P*(5CM)P*G)-3') ; 1853.336 2 ? ? ? ? 2 non-polymer syn 'U-58872, HYDROXY DERIVATIVE OF NOGALAMYCIN' 803.803 2 ? ? ? ? 3 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(5CM)(DG)(DT)(AS)(5CM)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'U-58872, HYDROXY DERIVATIVE OF NOGALAMYCIN' NGU 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 5CM n 1 2 DG n 1 3 DT n 1 4 AS n 1 5 5CM n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 AS 'DNA linking' n ;2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE ; ? 'C10 H14 N5 O5 P S' 347.287 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NGU non-polymer . 'U-58872, HYDROXY DERIVATIVE OF NOGALAMYCIN' ? 'C39 H49 N O17' 803.803 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 5CM 1 1 1 5CM +C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 AS 4 4 4 AS +A A . n A 1 5 5CM 5 5 5 5CM +C A . n A 1 6 DG 6 6 6 DG G A . n B 1 1 5CM 1 7 7 5CM +C B . n B 1 2 DG 2 8 8 DG G B . n B 1 3 DT 3 9 9 DT T B . n B 1 4 AS 4 10 10 AS +A B . n B 1 5 5CM 5 11 11 5CM +C B . n B 1 6 DG 6 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NGU 1 13 13 NGU NGU B . D 2 NGU 1 14 14 NGU NGU B . E 3 HOH 1 15 15 HOH HOH A . E 3 HOH 2 27 27 HOH HOH A . E 3 HOH 3 31 31 HOH HOH A . E 3 HOH 4 33 33 HOH HOH A . E 3 HOH 5 35 35 HOH HOH A . E 3 HOH 6 36 36 HOH HOH A . E 3 HOH 7 37 37 HOH HOH A . E 3 HOH 8 38 38 HOH HOH A . E 3 HOH 9 39 39 HOH HOH A . E 3 HOH 10 45 45 HOH HOH A . E 3 HOH 11 46 46 HOH HOH A . E 3 HOH 12 47 47 HOH HOH A . E 3 HOH 13 55 55 HOH HOH A . E 3 HOH 14 56 56 HOH HOH A . E 3 HOH 15 57 57 HOH HOH A . E 3 HOH 16 58 58 HOH HOH A . E 3 HOH 17 59 59 HOH HOH A . E 3 HOH 18 63 63 HOH HOH A . E 3 HOH 19 68 68 HOH HOH A . E 3 HOH 20 69 69 HOH HOH A . E 3 HOH 21 70 70 HOH HOH A . E 3 HOH 22 71 71 HOH HOH A . E 3 HOH 23 72 72 HOH HOH A . E 3 HOH 24 73 73 HOH HOH A . E 3 HOH 25 75 75 HOH HOH A . E 3 HOH 26 76 76 HOH HOH A . E 3 HOH 27 88 88 HOH HOH A . F 3 HOH 1 16 16 HOH HOH B . F 3 HOH 2 17 17 HOH HOH B . F 3 HOH 3 18 18 HOH HOH B . F 3 HOH 4 19 19 HOH HOH B . F 3 HOH 5 20 20 HOH HOH B . F 3 HOH 6 21 21 HOH HOH B . F 3 HOH 7 22 22 HOH HOH B . F 3 HOH 8 23 23 HOH HOH B . F 3 HOH 9 24 24 HOH HOH B . F 3 HOH 10 25 25 HOH HOH B . F 3 HOH 11 26 26 HOH HOH B . F 3 HOH 12 28 28 HOH HOH B . F 3 HOH 13 29 29 HOH HOH B . F 3 HOH 14 30 30 HOH HOH B . F 3 HOH 15 32 32 HOH HOH B . F 3 HOH 16 34 34 HOH HOH B . F 3 HOH 17 40 40 HOH HOH B . F 3 HOH 18 41 41 HOH HOH B . F 3 HOH 19 42 42 HOH HOH B . F 3 HOH 20 43 43 HOH HOH B . F 3 HOH 21 44 44 HOH HOH B . F 3 HOH 22 48 48 HOH HOH B . F 3 HOH 23 49 49 HOH HOH B . F 3 HOH 24 50 50 HOH HOH B . F 3 HOH 25 51 51 HOH HOH B . F 3 HOH 26 52 52 HOH HOH B . F 3 HOH 27 53 53 HOH HOH B . F 3 HOH 28 54 54 HOH HOH B . F 3 HOH 29 60 60 HOH HOH B . F 3 HOH 30 61 61 HOH HOH B . F 3 HOH 31 62 62 HOH HOH B . F 3 HOH 32 64 64 HOH HOH B . F 3 HOH 33 65 65 HOH HOH B . F 3 HOH 34 66 66 HOH HOH B . F 3 HOH 35 67 67 HOH HOH B . F 3 HOH 36 74 74 HOH HOH B . F 3 HOH 37 77 77 HOH HOH B . F 3 HOH 38 78 78 HOH HOH B . F 3 HOH 39 79 79 HOH HOH B . F 3 HOH 40 80 80 HOH HOH B . F 3 HOH 41 81 81 HOH HOH B . F 3 HOH 42 82 82 HOH HOH B . F 3 HOH 43 83 83 HOH HOH B . F 3 HOH 44 84 84 HOH HOH B . F 3 HOH 45 85 85 HOH HOH B . F 3 HOH 46 86 86 HOH HOH B . F 3 HOH 47 87 87 HOH HOH B . F 3 HOH 48 89 89 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D22 _cell.length_a 26.270 _cell.length_b 26.270 _cell.length_c 100.230 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D22 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # _exptl.entry_id 1D22 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.33 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.00 _exptl_crystal_grow.pdbx_details 'pH 5.00, VAPOR DIFFUSION, temperature 298.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'PEG 400' ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 'PEG 400' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D22 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.800 _reflns.number_obs 2143 _reflns.number_all 4210 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D22 _refine.ls_number_reflns_obs 2143 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.196 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 238 _refine_hist.pdbx_number_atoms_ligand 120 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 433 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.040 ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D22 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D22 _struct.title 'BINDING OF THE ANTITUMOR DRUG NOGALAMYCIN AND ITS DERIVATIVES TO DNA: STRUCTURAL COMPARISON' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D22 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D22 _struct_ref.pdbx_db_accession 1D22 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D22 A 1 ? 6 ? 1D22 1 ? 6 ? 1 6 2 1 1D22 B 1 ? 6 ? 1D22 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A 5CM 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A 5CM 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.669 ? ? covale2 covale both ? A DT 3 "O3'" ? ? ? 1_555 A AS 4 P ? ? A DT 3 A AS 4 1_555 ? ? ? ? ? ? ? 1.661 ? ? covale3 covale both ? A AS 4 "O3'" ? ? ? 1_555 A 5CM 5 P ? ? A AS 4 A 5CM 5 1_555 ? ? ? ? ? ? ? 1.622 ? ? covale4 covale both ? A 5CM 5 "O3'" ? ? ? 1_555 A DG 6 P ? ? A 5CM 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale5 covale both ? B 5CM 1 "O3'" ? ? ? 1_555 B DG 2 P ? ? B 5CM 7 B DG 8 1_555 ? ? ? ? ? ? ? 1.530 ? ? covale6 covale both ? B DT 3 "O3'" ? ? ? 1_555 B AS 4 P ? ? B DT 9 B AS 10 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale7 covale both ? B AS 4 "O3'" ? ? ? 1_555 B 5CM 5 P ? ? B AS 10 B 5CM 11 1_555 ? ? ? ? ? ? ? 1.577 ? ? covale8 covale both ? B 5CM 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 5CM 11 B DG 12 1_555 ? ? ? ? ? ? ? 1.671 ? ? hydrog1 hydrog ? ? A 5CM 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A 5CM 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A 5CM 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B 5CM 5 N3 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B 5CM 5 O2 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B 5CM 5 N4 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B AS 4 N1 ? ? A DT 3 B AS 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B AS 4 N6 ? ? A DT 3 B AS 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A AS 4 N1 ? ? ? 1_555 B DT 3 N3 ? ? A AS 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A AS 4 N6 ? ? ? 1_555 B DT 3 O4 ? ? A AS 4 B DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A 5CM 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A 5CM 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A 5CM 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B 5CM 1 N3 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B 5CM 1 O2 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B 5CM 1 N4 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B NGU 13 ? 18 'BINDING SITE FOR RESIDUE NGU B 13' AC2 Software B NGU 14 ? 17 'BINDING SITE FOR RESIDUE NGU B 14' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 18 AS A 4 ? AS A 4 . ? 1_555 ? 2 AC1 18 5CM A 5 ? 5CM A 5 . ? 1_555 ? 3 AC1 18 DG A 6 ? DG A 6 . ? 1_555 ? 4 AC1 18 HOH E . ? HOH A 45 . ? 1_445 ? 5 AC1 18 HOH E . ? HOH A 47 . ? 1_555 ? 6 AC1 18 HOH E . ? HOH A 70 . ? 1_445 ? 7 AC1 18 5CM B 1 ? 5CM B 7 . ? 1_555 ? 8 AC1 18 DG B 2 ? DG B 8 . ? 1_555 ? 9 AC1 18 DT B 3 ? DT B 9 . ? 6_555 ? 10 AC1 18 DT B 3 ? DT B 9 . ? 1_555 ? 11 AC1 18 AS B 4 ? AS B 10 . ? 1_555 ? 12 AC1 18 NGU D . ? NGU B 14 . ? 5_564 ? 13 AC1 18 HOH F . ? HOH B 25 . ? 1_455 ? 14 AC1 18 HOH F . ? HOH B 28 . ? 6_555 ? 15 AC1 18 HOH F . ? HOH B 41 . ? 1_555 ? 16 AC1 18 HOH F . ? HOH B 60 . ? 1_445 ? 17 AC1 18 HOH F . ? HOH B 61 . ? 1_555 ? 18 AC1 18 HOH F . ? HOH B 74 . ? 1_555 ? 19 AC2 17 5CM A 1 ? 5CM A 1 . ? 1_555 ? 20 AC2 17 DG A 2 ? DG A 2 . ? 1_555 ? 21 AC2 17 DT A 3 ? DT A 3 . ? 1_555 ? 22 AC2 17 DT A 3 ? DT A 3 . ? 5_554 ? 23 AC2 17 AS A 4 ? AS A 4 . ? 1_555 ? 24 AC2 17 AS A 4 ? AS A 4 . ? 5_554 ? 25 AC2 17 HOH E . ? HOH A 57 . ? 1_545 ? 26 AC2 17 HOH E . ? HOH A 58 . ? 1_555 ? 27 AC2 17 DG B 2 ? DG B 8 . ? 6_665 ? 28 AC2 17 AS B 4 ? AS B 10 . ? 1_555 ? 29 AC2 17 5CM B 5 ? 5CM B 11 . ? 1_555 ? 30 AC2 17 DG B 6 ? DG B 12 . ? 1_555 ? 31 AC2 17 NGU C . ? NGU B 13 . ? 6_655 ? 32 AC2 17 HOH F . ? HOH B 21 . ? 1_555 ? 33 AC2 17 HOH F . ? HOH B 41 . ? 6_655 ? 34 AC2 17 HOH F . ? HOH B 78 . ? 1_545 ? 35 AC2 17 HOH F . ? HOH B 87 . ? 6_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 C26 B NGU 14 ? ? 1_555 O B HOH 87 ? ? 6_555 1.61 2 1 N3 A DG 6 ? ? 1_555 O B HOH 62 ? ? 1_455 1.62 3 1 "C1'" A DG 6 ? ? 1_555 O B HOH 62 ? ? 1_455 1.75 4 1 C4 A DG 6 ? ? 1_555 O B HOH 62 ? ? 1_455 1.87 5 1 N2 A DG 6 ? ? 1_555 O B HOH 25 ? ? 1_455 1.89 6 1 N9 A DG 6 ? ? 1_555 O B HOH 62 ? ? 1_455 1.89 7 1 O B HOH 53 ? ? 1_555 O B HOH 67 ? ? 5_554 2.00 8 1 OP2 B DT 9 ? ? 1_555 O B HOH 53 ? ? 1_455 2.10 9 1 OP2 B DG 8 ? ? 1_555 O B HOH 81 ? ? 1_445 2.14 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.499 1.420 0.079 0.011 N 2 1 P A DT 3 ? ? OP2 A DT 3 ? ? 1.595 1.485 0.110 0.017 N 3 1 P A DT 3 ? ? "O5'" A DT 3 ? ? 1.529 1.593 -0.064 0.010 N 4 1 "C2'" A DT 3 ? ? "C1'" A DT 3 ? ? 1.454 1.518 -0.064 0.010 N 5 1 C4 A DT 3 ? ? O4 A DT 3 ? ? 1.304 1.228 0.076 0.009 N 6 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.486 1.420 0.066 0.011 N 7 1 "O3'" B 5CM 7 ? ? P B DG 8 ? ? 1.530 1.607 -0.077 0.012 Y 8 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? 1.497 1.420 0.077 0.011 N 9 1 "C2'" B DT 9 ? ? "C1'" B DT 9 ? ? 1.455 1.518 -0.063 0.010 N 10 1 C4 B DT 9 ? ? O4 B DT 9 ? ? 1.295 1.228 0.067 0.009 N 11 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? 1.500 1.420 0.080 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 120.12 110.70 9.42 1.20 N 2 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 99.71 109.40 -9.69 0.80 N 3 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 120.50 125.10 -4.60 0.60 N 4 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 115.78 111.50 4.28 0.50 N 5 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 151.01 119.70 31.31 1.20 Y 6 1 "O3'" A DG 2 ? ? P A DT 3 ? ? "O5'" A DT 3 ? ? 117.34 104.00 13.34 1.90 Y 7 1 "O3'" A DG 2 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 90.30 105.20 -14.90 2.20 Y 8 1 OP1 A DT 3 ? ? P A DT 3 ? ? OP2 A DT 3 ? ? 109.58 119.60 -10.02 1.50 N 9 1 "O5'" A DT 3 ? ? P A DT 3 ? ? OP1 A DT 3 ? ? 118.14 110.70 7.44 1.20 N 10 1 P A DT 3 ? ? "O5'" A DT 3 ? ? "C5'" A DT 3 ? ? 159.08 120.90 38.18 1.60 N 11 1 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? 96.00 104.50 -8.50 0.40 N 12 1 "C5'" A DT 3 ? ? "C4'" A DT 3 ? ? "O4'" A DT 3 ? ? 119.61 109.80 9.81 1.10 N 13 1 "C4'" A DT 3 ? ? "C3'" A DT 3 ? ? "C2'" A DT 3 ? ? 98.00 102.20 -4.20 0.70 N 14 1 N1 A DT 3 ? ? "C1'" A DT 3 ? ? "C2'" A DT 3 ? ? 124.92 114.30 10.62 1.40 N 15 1 C6 A DT 3 ? ? N1 A DT 3 ? ? C2 A DT 3 ? ? 116.70 121.30 -4.60 0.50 N 16 1 N1 A DT 3 ? ? C2 A DT 3 ? ? N3 A DT 3 ? ? 119.03 114.60 4.43 0.60 N 17 1 N1 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 116.50 123.10 -6.60 0.80 N 18 1 "C3'" A DT 3 ? ? "O3'" A DT 3 ? ? P A AS 4 ? ? 136.09 119.70 16.39 1.20 Y 19 1 "C3'" A AS 4 ? ? "O3'" A AS 4 ? ? P A 5CM 5 ? ? 140.34 119.70 20.64 1.20 Y 20 1 "O3'" A 5CM 5 ? ? P A DG 6 ? ? "O5'" A DG 6 ? ? 89.75 104.00 -14.25 1.90 Y 21 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 124.19 110.70 13.49 1.20 N 22 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 103.47 109.40 -5.93 0.80 N 23 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 120.78 125.10 -4.32 0.60 N 24 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 127.71 123.90 3.81 0.60 N 25 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.81 111.50 3.31 0.50 N 26 1 "C3'" B 5CM 7 ? ? "O3'" B 5CM 7 ? ? P B DG 8 ? ? 131.74 119.70 12.04 1.20 Y 27 1 OP1 B DG 8 ? ? P B DG 8 ? ? OP2 B DG 8 ? ? 110.15 119.60 -9.45 1.50 N 28 1 "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 104.50 109.40 -4.90 0.80 N 29 1 P B DG 8 ? ? "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? 107.94 120.90 -12.96 1.60 N 30 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? "C2'" B DG 8 ? ? 98.50 105.90 -7.40 0.80 N 31 1 "C3'" B DG 8 ? ? "O3'" B DG 8 ? ? P B DT 9 ? ? 133.34 119.70 13.64 1.20 Y 32 1 "O5'" B DT 9 ? ? P B DT 9 ? ? OP2 B DT 9 ? ? 122.32 110.70 11.62 1.20 N 33 1 "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? "C3'" B DT 9 ? ? 99.35 104.50 -5.15 0.40 N 34 1 "C1'" B DT 9 ? ? "O4'" B DT 9 ? ? "C4'" B DT 9 ? ? 104.09 110.10 -6.01 1.00 N 35 1 C2 B DT 9 ? ? N3 B DT 9 ? ? C4 B DT 9 ? ? 122.45 127.20 -4.75 0.60 N 36 1 N3 B DT 9 ? ? C4 B DT 9 ? ? C5 B DT 9 ? ? 120.68 115.20 5.48 0.60 N 37 1 "C3'" B DT 9 ? ? "O3'" B DT 9 ? ? P B AS 10 ? ? 134.02 119.70 14.32 1.20 Y 38 1 "C3'" B AS 10 ? ? "O3'" B AS 10 ? ? P B 5CM 11 ? ? 130.10 119.70 10.40 1.20 Y 39 1 "C3'" B 5CM 11 ? ? "O3'" B 5CM 11 ? ? P B DG 12 ? ? 138.21 119.70 18.51 1.20 Y 40 1 "O5'" B DG 12 ? ? P B DG 12 ? ? OP1 B DG 12 ? ? 121.43 110.70 10.73 1.20 N 41 1 "O5'" B DG 12 ? ? P B DG 12 ? ? OP2 B DG 12 ? ? 121.96 110.70 11.26 1.20 N 42 1 C4 B DG 12 ? ? C5 B DG 12 ? ? N7 B DG 12 ? ? 108.24 110.80 -2.56 0.40 N 43 1 N9 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 108.17 105.40 2.77 0.40 N 44 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 114.05 119.90 -5.85 0.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 1 A 5CM 1 ? DC ? 2 A AS 4 A AS 4 ? DA ? 3 A 5CM 5 A 5CM 5 ? DC ? 4 B 5CM 1 B 5CM 7 ? DC ? 5 B AS 4 B AS 10 ? DA ? 6 B 5CM 5 B 5CM 11 ? DC ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL DRUGS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL DRUGS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 AS P P N N 38 AS OP1 O N N 39 AS S2P S N N 40 AS OP3 O N N 41 AS "O5'" O N N 42 AS "C5'" C N N 43 AS "C4'" C N R 44 AS "O4'" O N N 45 AS "C3'" C N S 46 AS "O3'" O N N 47 AS "C2'" C N N 48 AS "C1'" C N R 49 AS N9 N Y N 50 AS C8 C Y N 51 AS N7 N Y N 52 AS C5 C Y N 53 AS C6 C Y N 54 AS N6 N N N 55 AS N1 N Y N 56 AS C2 C Y N 57 AS N3 N Y N 58 AS C4 C Y N 59 AS HOP1 H N N 60 AS HOP3 H N N 61 AS "H5'" H N N 62 AS "H5''" H N N 63 AS "H4'" H N N 64 AS "H3'" H N N 65 AS "HO3'" H N N 66 AS "H2'" H N N 67 AS "H2''" H N N 68 AS "H1'" H N N 69 AS H8 H N N 70 AS HN61 H N N 71 AS HN62 H N N 72 AS H2 H N N 73 DG OP3 O N N 74 DG P P N N 75 DG OP1 O N N 76 DG OP2 O N N 77 DG "O5'" O N N 78 DG "C5'" C N N 79 DG "C4'" C N R 80 DG "O4'" O N N 81 DG "C3'" C N S 82 DG "O3'" O N N 83 DG "C2'" C N N 84 DG "C1'" C N R 85 DG N9 N Y N 86 DG C8 C Y N 87 DG N7 N Y N 88 DG C5 C Y N 89 DG C6 C N N 90 DG O6 O N N 91 DG N1 N N N 92 DG C2 C N N 93 DG N2 N N N 94 DG N3 N N N 95 DG C4 C Y N 96 DG HOP3 H N N 97 DG HOP2 H N N 98 DG "H5'" H N N 99 DG "H5''" H N N 100 DG "H4'" H N N 101 DG "H3'" H N N 102 DG "HO3'" H N N 103 DG "H2'" H N N 104 DG "H2''" H N N 105 DG "H1'" H N N 106 DG H8 H N N 107 DG H1 H N N 108 DG H21 H N N 109 DG H22 H N N 110 DT OP3 O N N 111 DT P P N N 112 DT OP1 O N N 113 DT OP2 O N N 114 DT "O5'" O N N 115 DT "C5'" C N N 116 DT "C4'" C N R 117 DT "O4'" O N N 118 DT "C3'" C N S 119 DT "O3'" O N N 120 DT "C2'" C N N 121 DT "C1'" C N R 122 DT N1 N N N 123 DT C2 C N N 124 DT O2 O N N 125 DT N3 N N N 126 DT C4 C N N 127 DT O4 O N N 128 DT C5 C N N 129 DT C7 C N N 130 DT C6 C N N 131 DT HOP3 H N N 132 DT HOP2 H N N 133 DT "H5'" H N N 134 DT "H5''" H N N 135 DT "H4'" H N N 136 DT "H3'" H N N 137 DT "HO3'" H N N 138 DT "H2'" H N N 139 DT "H2''" H N N 140 DT "H1'" H N N 141 DT H3 H N N 142 DT H71 H N N 143 DT H72 H N N 144 DT H73 H N N 145 DT H6 H N N 146 HOH O O N N 147 HOH H1 H N N 148 HOH H2 H N N 149 NGU C1 C Y N 150 NGU C2 C Y N 151 NGU C3 C Y N 152 NGU C4 C Y N 153 NGU C5 C N N 154 NGU C6 C Y N 155 NGU C7 C N S 156 NGU C8 C N N 157 NGU C9 C N S 158 NGU C10 C N R 159 NGU C11 C Y N 160 NGU C12 C N N 161 NGU C13 C N N 162 NGU C14 C N N 163 NGU C15 C N N 164 NGU C16 C Y N 165 NGU C17 C Y N 166 NGU C18 C Y N 167 NGU C19 C Y N 168 NGU C20 C Y N 169 NGU C21 C Y N 170 NGU O1 O N N 171 NGU O4 O N N 172 NGU O5 O N N 173 NGU O6 O N N 174 NGU O7 O N N 175 NGU O9 O N N 176 NGU O10 O N N 177 NGU O14 O N N 178 NGU O12 O N N 179 NGU "C1'" C N R 180 NGU "C2'" C N R 181 NGU "C3'" C N R 182 NGU "C4'" C N S 183 NGU "C5'" C N S 184 NGU C25 C N N 185 NGU C26 C N N 186 NGU C27 C N N 187 NGU C28 C N N 188 NGU C29 C N N 189 NGU "O1'" O N N 190 NGU "O2'" O N N 191 NGU "O3'" O N N 192 NGU "O4'" O N N 193 NGU C30 C N S 194 NGU C31 C N S 195 NGU C32 C N R 196 NGU C33 C N R 197 NGU C34 C N R 198 NGU C22 C N N 199 NGU C23 C N N 200 NGU C24 C N N 201 NGU N1 N N N 202 NGU O2 O N N 203 NGU O15 O N N 204 NGU O16 O N N 205 NGU O23 O N N 206 NGU H3 H N N 207 NGU H7 H N N 208 NGU H81 H N N 209 NGU H82 H N N 210 NGU H10 H N N 211 NGU H11 H N N 212 NGU H131 H N N 213 NGU H132 H N N 214 NGU H133 H N N 215 NGU H151 H N N 216 NGU H152 H N N 217 NGU H153 H N N 218 NGU HO4 H N N 219 NGU HO6 H N N 220 NGU HO9 H N N 221 NGU "H1'" H N N 222 NGU "H2'" H N N 223 NGU "H4'" H N N 224 NGU "H5'" H N N 225 NGU H251 H N N 226 NGU H252 H N N 227 NGU H253 H N N 228 NGU H261 H N N 229 NGU H262 H N N 230 NGU H263 H N N 231 NGU H271 H N N 232 NGU H272 H N N 233 NGU H273 H N N 234 NGU H281 H N N 235 NGU H282 H N N 236 NGU H283 H N N 237 NGU H291 H N N 238 NGU H292 H N N 239 NGU H293 H N N 240 NGU H30 H N N 241 NGU H31 H N N 242 NGU H32 H N N 243 NGU H33 H N N 244 NGU H221 H N N 245 NGU H222 H N N 246 NGU H223 H N N 247 NGU H231 H N N 248 NGU H232 H N N 249 NGU H241 H N N 250 NGU H242 H N N 251 NGU H243 H N N 252 NGU H15 H N N 253 NGU H16 H N N 254 NGU H23 H N N 255 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 AS P OP1 sing N N 39 AS P S2P doub N N 40 AS P OP3 sing N N 41 AS P "O5'" sing N N 42 AS OP1 HOP1 sing N N 43 AS OP3 HOP3 sing N N 44 AS "O5'" "C5'" sing N N 45 AS "C5'" "C4'" sing N N 46 AS "C5'" "H5'" sing N N 47 AS "C5'" "H5''" sing N N 48 AS "C4'" "O4'" sing N N 49 AS "C4'" "C3'" sing N N 50 AS "C4'" "H4'" sing N N 51 AS "O4'" "C1'" sing N N 52 AS "C3'" "O3'" sing N N 53 AS "C3'" "C2'" sing N N 54 AS "C3'" "H3'" sing N N 55 AS "O3'" "HO3'" sing N N 56 AS "C2'" "C1'" sing N N 57 AS "C2'" "H2'" sing N N 58 AS "C2'" "H2''" sing N N 59 AS "C1'" N9 sing N N 60 AS "C1'" "H1'" sing N N 61 AS N9 C8 sing Y N 62 AS N9 C4 sing Y N 63 AS C8 N7 doub Y N 64 AS C8 H8 sing N N 65 AS N7 C5 sing Y N 66 AS C5 C6 sing Y N 67 AS C5 C4 doub Y N 68 AS C6 N6 sing N N 69 AS C6 N1 doub Y N 70 AS N6 HN61 sing N N 71 AS N6 HN62 sing N N 72 AS N1 C2 sing Y N 73 AS C2 N3 doub Y N 74 AS C2 H2 sing N N 75 AS N3 C4 sing Y N 76 DG OP3 P sing N N 77 DG OP3 HOP3 sing N N 78 DG P OP1 doub N N 79 DG P OP2 sing N N 80 DG P "O5'" sing N N 81 DG OP2 HOP2 sing N N 82 DG "O5'" "C5'" sing N N 83 DG "C5'" "C4'" sing N N 84 DG "C5'" "H5'" sing N N 85 DG "C5'" "H5''" sing N N 86 DG "C4'" "O4'" sing N N 87 DG "C4'" "C3'" sing N N 88 DG "C4'" "H4'" sing N N 89 DG "O4'" "C1'" sing N N 90 DG "C3'" "O3'" sing N N 91 DG "C3'" "C2'" sing N N 92 DG "C3'" "H3'" sing N N 93 DG "O3'" "HO3'" sing N N 94 DG "C2'" "C1'" sing N N 95 DG "C2'" "H2'" sing N N 96 DG "C2'" "H2''" sing N N 97 DG "C1'" N9 sing N N 98 DG "C1'" "H1'" sing N N 99 DG N9 C8 sing Y N 100 DG N9 C4 sing Y N 101 DG C8 N7 doub Y N 102 DG C8 H8 sing N N 103 DG N7 C5 sing Y N 104 DG C5 C6 sing N N 105 DG C5 C4 doub Y N 106 DG C6 O6 doub N N 107 DG C6 N1 sing N N 108 DG N1 C2 sing N N 109 DG N1 H1 sing N N 110 DG C2 N2 sing N N 111 DG C2 N3 doub N N 112 DG N2 H21 sing N N 113 DG N2 H22 sing N N 114 DG N3 C4 sing N N 115 DT OP3 P sing N N 116 DT OP3 HOP3 sing N N 117 DT P OP1 doub N N 118 DT P OP2 sing N N 119 DT P "O5'" sing N N 120 DT OP2 HOP2 sing N N 121 DT "O5'" "C5'" sing N N 122 DT "C5'" "C4'" sing N N 123 DT "C5'" "H5'" sing N N 124 DT "C5'" "H5''" sing N N 125 DT "C4'" "O4'" sing N N 126 DT "C4'" "C3'" sing N N 127 DT "C4'" "H4'" sing N N 128 DT "O4'" "C1'" sing N N 129 DT "C3'" "O3'" sing N N 130 DT "C3'" "C2'" sing N N 131 DT "C3'" "H3'" sing N N 132 DT "O3'" "HO3'" sing N N 133 DT "C2'" "C1'" sing N N 134 DT "C2'" "H2'" sing N N 135 DT "C2'" "H2''" sing N N 136 DT "C1'" N1 sing N N 137 DT "C1'" "H1'" sing N N 138 DT N1 C2 sing N N 139 DT N1 C6 sing N N 140 DT C2 O2 doub N N 141 DT C2 N3 sing N N 142 DT N3 C4 sing N N 143 DT N3 H3 sing N N 144 DT C4 O4 doub N N 145 DT C4 C5 sing N N 146 DT C5 C7 sing N N 147 DT C5 C6 doub N N 148 DT C7 H71 sing N N 149 DT C7 H72 sing N N 150 DT C7 H73 sing N N 151 DT C6 H6 sing N N 152 HOH O H1 sing N N 153 HOH O H2 sing N N 154 NGU C1 C2 doub Y N 155 NGU C1 C21 sing Y N 156 NGU C1 O1 sing N N 157 NGU C2 C3 sing Y N 158 NGU C2 C34 sing N N 159 NGU C3 C4 doub Y N 160 NGU C3 H3 sing N N 161 NGU C4 C16 sing Y N 162 NGU C4 O4 sing N N 163 NGU C5 C16 sing N N 164 NGU C5 C17 sing N N 165 NGU C5 O5 doub N N 166 NGU C6 C17 sing Y N 167 NGU C6 C18 doub Y N 168 NGU C6 O6 sing N N 169 NGU C7 C8 sing N N 170 NGU C7 C18 sing N N 171 NGU C7 O7 sing N N 172 NGU C7 H7 sing N N 173 NGU C8 C9 sing N N 174 NGU C8 H81 sing N N 175 NGU C8 H82 sing N N 176 NGU C9 C10 sing N N 177 NGU C9 C13 sing N N 178 NGU C9 O9 sing N N 179 NGU C10 C14 sing N N 180 NGU C10 C19 sing N N 181 NGU C10 H10 sing N N 182 NGU C11 C19 doub Y N 183 NGU C11 C20 sing Y N 184 NGU C11 H11 sing N N 185 NGU C12 C20 sing N N 186 NGU C12 C21 sing N N 187 NGU C12 O12 doub N N 188 NGU C13 H131 sing N N 189 NGU C13 H132 sing N N 190 NGU C13 H133 sing N N 191 NGU C14 O10 sing N N 192 NGU C14 O14 doub N N 193 NGU C15 O10 sing N N 194 NGU C15 H151 sing N N 195 NGU C15 H152 sing N N 196 NGU C15 H153 sing N N 197 NGU C16 C21 doub Y N 198 NGU C17 C20 doub Y N 199 NGU C18 C19 sing Y N 200 NGU O1 C30 sing N N 201 NGU O4 HO4 sing N N 202 NGU O6 HO6 sing N N 203 NGU O7 "C1'" sing N N 204 NGU O9 HO9 sing N N 205 NGU "C1'" "C2'" sing N N 206 NGU "C1'" "O1'" sing N N 207 NGU "C1'" "H1'" sing N N 208 NGU "C2'" "C3'" sing N N 209 NGU "C2'" "O2'" sing N N 210 NGU "C2'" "H2'" sing N N 211 NGU "C3'" "C4'" sing N N 212 NGU "C3'" C28 sing N N 213 NGU "C3'" "O3'" sing N N 214 NGU "C4'" "C5'" sing N N 215 NGU "C4'" "O4'" sing N N 216 NGU "C4'" "H4'" sing N N 217 NGU "C5'" C25 sing N N 218 NGU "C5'" "O1'" sing N N 219 NGU "C5'" "H5'" sing N N 220 NGU C25 H251 sing N N 221 NGU C25 H252 sing N N 222 NGU C25 H253 sing N N 223 NGU C26 "O4'" sing N N 224 NGU C26 H261 sing N N 225 NGU C26 H262 sing N N 226 NGU C26 H263 sing N N 227 NGU C27 "O3'" sing N N 228 NGU C27 H271 sing N N 229 NGU C27 H272 sing N N 230 NGU C27 H273 sing N N 231 NGU C28 H281 sing N N 232 NGU C28 H282 sing N N 233 NGU C28 H283 sing N N 234 NGU C29 "O2'" sing N N 235 NGU C29 H291 sing N N 236 NGU C29 H292 sing N N 237 NGU C29 H293 sing N N 238 NGU C30 C31 sing N N 239 NGU C30 O2 sing N N 240 NGU C30 H30 sing N N 241 NGU C31 C32 sing N N 242 NGU C31 O15 sing N N 243 NGU C31 H31 sing N N 244 NGU C32 C33 sing N N 245 NGU C32 N1 sing N N 246 NGU C32 H32 sing N N 247 NGU C33 C34 sing N N 248 NGU C33 O16 sing N N 249 NGU C33 H33 sing N N 250 NGU C34 C22 sing N N 251 NGU C34 O2 sing N N 252 NGU C22 H221 sing N N 253 NGU C22 H222 sing N N 254 NGU C22 H223 sing N N 255 NGU C23 N1 sing N N 256 NGU C23 O23 sing N N 257 NGU C23 H231 sing N N 258 NGU C23 H232 sing N N 259 NGU C24 N1 sing N N 260 NGU C24 H241 sing N N 261 NGU C24 H242 sing N N 262 NGU C24 H243 sing N N 263 NGU O15 H15 sing N N 264 NGU O16 H16 sing N N 265 NGU O23 H23 sing N N 266 # _ndb_struct_conf_na.entry_id 1D22 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A 5CM 1 1_555 B DG 6 1_555 0.188 -0.355 -0.080 6.051 -0.080 2.716 1 A_5CM1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B 5CM 5 1_555 -0.101 -0.274 -0.352 -14.288 2.089 -0.307 2 A_DG2:5CM11_B A 2 ? B 11 ? 19 1 1 A DT 3 1_555 B AS 4 1_555 0.980 -0.586 0.131 -0.124 -3.932 0.416 3 A_DT3:AS10_B A 3 ? B 10 ? 20 1 1 A AS 4 1_555 B DT 3 1_555 0.646 -0.486 0.266 2.012 -7.676 0.986 4 A_AS4:DT9_B A 4 ? B 9 ? 20 1 1 A 5CM 5 1_555 B DG 2 1_555 0.151 -0.352 0.028 8.531 4.627 -3.693 5 A_5CM5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B 5CM 1 1_555 -0.066 -0.193 0.045 -9.871 4.606 -1.154 6 A_DG6:5CM7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A 5CM 1 1_555 B DG 6 1_555 A DG 2 1_555 B 5CM 5 1_555 0.252 0.466 6.916 2.768 -1.025 36.220 1.049 0.412 6.900 -1.645 -4.444 36.336 1 AA_5CM1DG2:5CM11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B 5CM 5 1_555 A DT 3 1_555 B AS 4 1_555 -0.378 -0.303 3.004 -3.757 0.651 29.339 -0.720 0.005 3.020 1.279 7.378 29.580 2 AA_DG2DT3:AS105CM11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DT 3 1_555 B AS 4 1_555 A AS 4 1_555 B DT 3 1_555 -0.210 -0.760 3.187 0.247 1.859 33.522 -1.610 0.403 3.140 3.220 -0.428 33.573 3 AA_DT3AS4:DT9AS10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A AS 4 1_555 B DT 3 1_555 A 5CM 5 1_555 B DG 2 1_555 0.503 -0.399 3.227 2.356 0.611 25.358 -1.078 -0.470 3.249 1.387 -5.350 25.473 4 AA_AS45CM5:DG8DT9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A 5CM 5 1_555 B DG 2 1_555 A DG 6 1_555 B 5CM 1 1_555 -0.693 0.791 6.818 -4.725 -2.733 34.784 2.159 -0.323 6.772 -4.537 7.844 35.197 5 AA_5CM5DG6:5CM7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 1D22 _atom_sites.fract_transf_matrix[1][1] 0.038066 _atom_sites.fract_transf_matrix[1][2] 0.021978 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.043955 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009977 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_