data_1D27 # _entry.id 1D27 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D27 pdb_00001d27 10.2210/pdb1d27/pdb RCSB BDLB26 ? ? WWPDB D_1000172631 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-04-07 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D27 _pdbx_database_status.recvd_initial_deposition_date 1991-04-22 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leonard, G.A.' 1 'Thomson, J.' 2 'Watson, W.P.' 3 'Brown, T.' 4 # _citation.id primary _citation.title 'High-resolution structure of a mutagenic lesion in DNA.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 87 _citation.page_first 9573 _citation.page_last 9576 _citation.year 1990 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 2263612 _citation.pdbx_database_id_DOI 10.1073/pnas.87.24.9573 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leonard, G.A.' 1 ? primary 'Thomson, J.' 2 ? primary 'Watson, W.P.' 3 ? primary 'Brown, T.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*(6OG)P*AP*AP*TP*TP*TP*GP*CP*G)-3') ; 3692.430 2 ? ? ? ? 2 water nat water 18.015 69 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(6OG)(DA)(DA)(DT)(DT)(DT)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTTGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 6OG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DT n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6OG 'DNA linking' n ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; ? 'C11 H16 N5 O7 P' 361.248 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 6OG 4 4 4 6OG +G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DT 9 9 9 DT T A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 6OG 4 16 16 6OG +G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DT 9 21 21 DT T B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 25 25 HOH HOH A . C 2 HOH 2 26 26 HOH HOH A . C 2 HOH 3 27 27 HOH HOH A . C 2 HOH 4 29 29 HOH HOH A . C 2 HOH 5 31 31 HOH HOH A . C 2 HOH 6 32 32 HOH HOH A . C 2 HOH 7 33 33 HOH HOH A . C 2 HOH 8 34 34 HOH HOH A . C 2 HOH 9 35 35 HOH HOH A . C 2 HOH 10 37 37 HOH HOH A . C 2 HOH 11 39 39 HOH HOH A . C 2 HOH 12 40 40 HOH HOH A . C 2 HOH 13 42 42 HOH HOH A . C 2 HOH 14 50 50 HOH HOH A . C 2 HOH 15 51 51 HOH HOH A . C 2 HOH 16 53 53 HOH HOH A . C 2 HOH 17 55 55 HOH HOH A . C 2 HOH 18 57 57 HOH HOH A . C 2 HOH 19 58 58 HOH HOH A . C 2 HOH 20 59 59 HOH HOH A . C 2 HOH 21 64 64 HOH HOH A . C 2 HOH 22 67 67 HOH HOH A . C 2 HOH 23 70 70 HOH HOH A . C 2 HOH 24 71 71 HOH HOH A . C 2 HOH 25 73 73 HOH HOH A . C 2 HOH 26 75 75 HOH HOH A . C 2 HOH 27 79 79 HOH HOH A . C 2 HOH 28 80 80 HOH HOH A . C 2 HOH 29 85 85 HOH HOH A . C 2 HOH 30 86 86 HOH HOH A . C 2 HOH 31 88 88 HOH HOH A . C 2 HOH 32 90 90 HOH HOH A . C 2 HOH 33 91 91 HOH HOH A . C 2 HOH 34 92 92 HOH HOH A . C 2 HOH 35 93 93 HOH HOH A . D 2 HOH 1 28 28 HOH HOH B . D 2 HOH 2 30 30 HOH HOH B . D 2 HOH 3 36 36 HOH HOH B . D 2 HOH 4 38 38 HOH HOH B . D 2 HOH 5 41 41 HOH HOH B . D 2 HOH 6 43 43 HOH HOH B . D 2 HOH 7 44 44 HOH HOH B . D 2 HOH 8 45 45 HOH HOH B . D 2 HOH 9 46 46 HOH HOH B . D 2 HOH 10 47 47 HOH HOH B . D 2 HOH 11 48 48 HOH HOH B . D 2 HOH 12 49 49 HOH HOH B . D 2 HOH 13 52 52 HOH HOH B . D 2 HOH 14 54 54 HOH HOH B . D 2 HOH 15 56 56 HOH HOH B . D 2 HOH 16 60 60 HOH HOH B . D 2 HOH 17 61 61 HOH HOH B . D 2 HOH 18 62 62 HOH HOH B . D 2 HOH 19 63 63 HOH HOH B . D 2 HOH 20 65 65 HOH HOH B . D 2 HOH 21 66 66 HOH HOH B . D 2 HOH 22 68 68 HOH HOH B . D 2 HOH 23 69 69 HOH HOH B . D 2 HOH 24 72 72 HOH HOH B . D 2 HOH 25 74 74 HOH HOH B . D 2 HOH 26 76 76 HOH HOH B . D 2 HOH 27 77 77 HOH HOH B . D 2 HOH 28 78 78 HOH HOH B . D 2 HOH 29 81 81 HOH HOH B . D 2 HOH 30 82 82 HOH HOH B . D 2 HOH 31 83 83 HOH HOH B . D 2 HOH 32 84 84 HOH HOH B . D 2 HOH 33 87 87 HOH HOH B . D 2 HOH 34 89 89 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D27 _cell.length_a 25.440 _cell.length_b 40.700 _cell.length_c 65.990 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D27 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1D27 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.82 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.30 _exptl_crystal_grow.pdbx_details 'pH 6.30, VAPOR DIFFUSION, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'HEXYLENE GLYCOL' ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 'NA CACODYLATE' ? ? ? # loop_ _diffrn.id _diffrn.crystal_id _diffrn.ambient_temp _diffrn.ambient_temp_details 1 1 ? ? 2 1 ? ? 3 1 ? ? # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 DIFFRACTOMETER ? ? ? 2 'AREA DETECTOR' 'SIEMENS-NICOLET X100' ? ? 3 DIFFRACTOMETER 'STOE-SIEMENS AED2' ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 ? ? ? x-ray 2 2 ? ? ? x-ray 3 3 ? ? ? x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 . 1.0 2 . 1.0 3 . 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 'ROTATING ANODE' ? ? ? ? ? 2 ? ? ? ? ? ? 3 ? ? ? ? ? ? # _reflns.entry_id 1D27 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.000 _reflns.number_obs 4557 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1,2,3 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D27 _refine.ls_number_reflns_obs 3118 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.185 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 559 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 7.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d 0.031 ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.029 ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D27 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D27 _struct.title 'HIGH-RESOLUTION STRUCTURE OF A MUTAGENIC LESION IN DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D27 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, MODIFIED, MISMATCHED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D27 _struct_ref.pdbx_db_accession 1D27 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D27 A 1 ? 12 ? 1D27 1 ? 12 ? 1 12 2 1 1D27 B 1 ? 12 ? 1D27 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 3 "O3'" ? ? ? 1_555 A 6OG 4 P ? ? A DC 3 A 6OG 4 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale one ? A 6OG 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A 6OG 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale3 covale both ? B DC 3 "O3'" ? ? ? 1_555 B 6OG 4 P ? ? B DC 15 B 6OG 16 1_555 ? ? ? ? ? ? ? 1.628 ? ? covale4 covale one ? B 6OG 4 "O3'" ? ? ? 1_555 B DA 5 P ? ? B 6OG 16 B DA 17 1_555 ? ? ? ? ? ? ? 1.576 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A 6OG 4 N2 ? ? ? 1_555 B DT 9 O2 ? ? A 6OG 4 B DT 21 1_555 ? ? ? ? ? ? '6OG-DT MISPAIR' ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B 6OG 4 O6 ? ? A DT 9 B 6OG 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A DT 9 O2 ? ? ? 1_555 B 6OG 4 N1 ? ? A DT 9 B 6OG 16 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 40 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 73 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_645 _pdbx_validate_symm_contact.dist 2.02 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? 1.499 1.420 0.079 0.011 N 2 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? 1.502 1.420 0.082 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 96.11 102.40 -6.29 0.80 N 2 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? "C2'" A DC 1 ? ? 99.98 105.90 -5.92 0.80 N 3 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 103.83 109.40 -5.57 0.80 N 4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 99.30 105.90 -6.60 0.80 N 5 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 127.37 119.70 7.67 1.20 Y 6 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 101.82 109.40 -7.58 0.80 N 7 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 101.52 104.50 -2.98 0.40 N 8 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 103.06 110.10 -7.04 1.00 N 9 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 98.10 105.90 -7.80 0.80 N 10 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 101.05 108.00 -6.95 0.70 N 11 1 "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 102.71 109.40 -6.69 0.80 N 12 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? "C2'" A DA 5 ? ? 97.51 105.90 -8.39 0.80 N 13 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 123.07 118.60 4.47 0.60 N 14 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 123.81 129.30 -5.49 0.50 N 15 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N1 A DA 5 ? ? 114.57 117.70 -3.13 0.50 N 16 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 102.27 109.40 -7.13 0.80 N 17 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.68 118.60 4.08 0.60 N 18 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 125.02 129.30 -4.28 0.50 N 19 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 103.46 109.40 -5.94 0.80 N 20 1 "C1'" A DT 7 ? ? "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 101.59 110.10 -8.51 1.00 N 21 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 97.33 105.90 -8.57 0.80 N 22 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 121.41 127.20 -5.79 0.60 N 23 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 119.52 115.20 4.32 0.60 N 24 1 N3 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 115.61 119.90 -4.29 0.60 N 25 1 P A DT 8 ? ? "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? 109.00 120.90 -11.90 1.60 N 26 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 103.67 108.00 -4.33 0.70 N 27 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 122.60 127.20 -4.60 0.60 N 28 1 C2 A DT 9 ? ? N3 A DT 9 ? ? C4 A DT 9 ? ? 121.63 127.20 -5.57 0.60 N 29 1 N3 A DT 9 ? ? C4 A DT 9 ? ? C5 A DT 9 ? ? 119.24 115.20 4.04 0.60 N 30 1 N3 A DT 9 ? ? C4 A DT 9 ? ? O4 A DT 9 ? ? 116.20 119.90 -3.70 0.60 N 31 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 102.14 109.40 -7.26 0.80 N 32 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 94.51 102.40 -7.89 0.80 N 33 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.52 108.30 2.22 0.30 N 34 1 C6 A DG 10 ? ? N1 A DG 10 ? ? C2 A DG 10 ? ? 120.93 125.10 -4.17 0.60 N 35 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 115.16 111.50 3.66 0.50 N 36 1 "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? "C4'" A DC 11 ? ? 101.17 109.40 -8.23 0.80 N 37 1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 101.15 109.40 -8.25 0.80 N 38 1 "C3'" B DC 13 ? ? "C2'" B DC 13 ? ? "C1'" B DC 13 ? ? 96.56 102.40 -5.84 0.80 N 39 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? "C2'" B DC 13 ? ? 100.27 105.90 -5.63 0.80 N 40 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 114.94 108.30 6.64 0.30 N 41 1 N3 B DC 13 ? ? C4 B DC 13 ? ? C5 B DC 13 ? ? 119.43 121.90 -2.47 0.40 N 42 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 100.38 105.90 -5.52 0.80 N 43 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 102.58 109.40 -6.82 0.80 N 44 1 "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? 101.54 104.50 -2.96 0.40 N 45 1 "C3'" B 6OG 16 ? ? "O3'" B 6OG 16 ? ? P B DA 17 ? ? 142.18 119.70 22.48 1.20 Y 46 1 "C4'" B DA 17 ? ? "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 97.75 102.20 -4.45 0.70 N 47 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 115.48 108.30 7.18 0.30 N 48 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 122.94 118.60 4.34 0.60 N 49 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 123.64 129.30 -5.66 0.50 N 50 1 "O5'" B DA 18 ? ? "C5'" B DA 18 ? ? "C4'" B DA 18 ? ? 100.21 109.40 -9.19 0.80 N 51 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 99.53 105.90 -6.37 0.80 N 52 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 122.97 118.60 4.37 0.60 N 53 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 124.23 129.30 -5.07 0.50 N 54 1 "C3'" B DA 18 ? ? "O3'" B DA 18 ? ? P B DT 19 ? ? 133.59 119.70 13.89 1.20 Y 55 1 P B DT 19 ? ? "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? 110.79 120.90 -10.11 1.60 N 56 1 "C1'" B DT 19 ? ? "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? 102.86 110.10 -7.24 1.00 N 57 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 100.82 108.00 -7.18 0.70 N 58 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 122.78 127.20 -4.42 0.60 N 59 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 119.52 115.20 4.32 0.60 N 60 1 "O5'" B DT 20 ? ? "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? 104.41 109.40 -4.99 0.80 N 61 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? "C2'" B DT 20 ? ? 100.82 105.90 -5.08 0.80 N 62 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 121.87 127.20 -5.33 0.60 N 63 1 N3 B DT 20 ? ? C4 B DT 20 ? ? C5 B DT 20 ? ? 119.13 115.20 3.93 0.60 N 64 1 N3 B DT 20 ? ? C2 B DT 20 ? ? O2 B DT 20 ? ? 118.56 122.30 -3.74 0.60 N 65 1 N3 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 115.60 119.90 -4.30 0.60 N 66 1 N1 B DT 21 ? ? C2 B DT 21 ? ? N3 B DT 21 ? ? 118.53 114.60 3.93 0.60 N 67 1 C2 B DT 21 ? ? N3 B DT 21 ? ? C4 B DT 21 ? ? 121.69 127.20 -5.51 0.60 N 68 1 N3 B DT 21 ? ? C4 B DT 21 ? ? C5 B DT 21 ? ? 119.53 115.20 4.33 0.60 N 69 1 N3 B DT 21 ? ? C4 B DT 21 ? ? O4 B DT 21 ? ? 115.65 119.90 -4.25 0.60 N 70 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 96.23 102.40 -6.17 0.80 N 71 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 114.38 108.30 6.08 0.30 N 72 1 C5 B DG 22 ? ? C6 B DG 22 ? ? N1 B DG 22 ? ? 114.70 111.50 3.20 0.50 N 73 1 "O5'" B DG 24 ? ? "C5'" B DG 24 ? ? "C4'" B DG 24 ? ? 103.56 109.40 -5.84 0.80 N 74 1 C6 B DG 24 ? ? N1 B DG 24 ? ? C2 B DG 24 ? ? 121.02 125.10 -4.08 0.60 N 75 1 C5 B DG 24 ? ? C6 B DG 24 ? ? N1 B DG 24 ? ? 115.34 111.50 3.84 0.50 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 6OG 4 A 6OG 4 ? DG ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; 2 B 6OG 4 B 6OG 16 ? DG ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6OG P P N N 1 6OG OP1 O N N 2 6OG OP2 O N N 3 6OG "O5'" O N N 4 6OG N9 N Y N 5 6OG C4 C Y N 6 6OG N3 N Y N 7 6OG C2 C Y N 8 6OG N2 N N N 9 6OG N1 N Y N 10 6OG C6 C Y N 11 6OG O6 O N N 12 6OG C5 C Y N 13 6OG N7 N Y N 14 6OG C8 C Y N 15 6OG "C2'" C N N 16 6OG "C5'" C N N 17 6OG "C4'" C N R 18 6OG "O4'" O N N 19 6OG "C1'" C N R 20 6OG "C3'" C N S 21 6OG "O3'" O N N 22 6OG C C N N 23 6OG HOP2 H N N 24 6OG HN21 H N N 25 6OG HN22 H N N 26 6OG H8 H N N 27 6OG "H2'" H N N 28 6OG "H2''" H N N 29 6OG "H5'" H N N 30 6OG "H5''" H N N 31 6OG "H4'" H N N 32 6OG "H1'" H N N 33 6OG "H3'" H N N 34 6OG "HO3'" H N N 35 6OG H1 H N N 36 6OG H2 H N N 37 6OG H3 H N N 38 6OG OP3 O N N 39 6OG HOP3 H N N 40 DA OP3 O N N 41 DA P P N N 42 DA OP1 O N N 43 DA OP2 O N N 44 DA "O5'" O N N 45 DA "C5'" C N N 46 DA "C4'" C N R 47 DA "O4'" O N N 48 DA "C3'" C N S 49 DA "O3'" O N N 50 DA "C2'" C N N 51 DA "C1'" C N R 52 DA N9 N Y N 53 DA C8 C Y N 54 DA N7 N Y N 55 DA C5 C Y N 56 DA C6 C Y N 57 DA N6 N N N 58 DA N1 N Y N 59 DA C2 C Y N 60 DA N3 N Y N 61 DA C4 C Y N 62 DA HOP3 H N N 63 DA HOP2 H N N 64 DA "H5'" H N N 65 DA "H5''" H N N 66 DA "H4'" H N N 67 DA "H3'" H N N 68 DA "HO3'" H N N 69 DA "H2'" H N N 70 DA "H2''" H N N 71 DA "H1'" H N N 72 DA H8 H N N 73 DA H61 H N N 74 DA H62 H N N 75 DA H2 H N N 76 DC OP3 O N N 77 DC P P N N 78 DC OP1 O N N 79 DC OP2 O N N 80 DC "O5'" O N N 81 DC "C5'" C N N 82 DC "C4'" C N R 83 DC "O4'" O N N 84 DC "C3'" C N S 85 DC "O3'" O N N 86 DC "C2'" C N N 87 DC "C1'" C N R 88 DC N1 N N N 89 DC C2 C N N 90 DC O2 O N N 91 DC N3 N N N 92 DC C4 C N N 93 DC N4 N N N 94 DC C5 C N N 95 DC C6 C N N 96 DC HOP3 H N N 97 DC HOP2 H N N 98 DC "H5'" H N N 99 DC "H5''" H N N 100 DC "H4'" H N N 101 DC "H3'" H N N 102 DC "HO3'" H N N 103 DC "H2'" H N N 104 DC "H2''" H N N 105 DC "H1'" H N N 106 DC H41 H N N 107 DC H42 H N N 108 DC H5 H N N 109 DC H6 H N N 110 DG OP3 O N N 111 DG P P N N 112 DG OP1 O N N 113 DG OP2 O N N 114 DG "O5'" O N N 115 DG "C5'" C N N 116 DG "C4'" C N R 117 DG "O4'" O N N 118 DG "C3'" C N S 119 DG "O3'" O N N 120 DG "C2'" C N N 121 DG "C1'" C N R 122 DG N9 N Y N 123 DG C8 C Y N 124 DG N7 N Y N 125 DG C5 C Y N 126 DG C6 C N N 127 DG O6 O N N 128 DG N1 N N N 129 DG C2 C N N 130 DG N2 N N N 131 DG N3 N N N 132 DG C4 C Y N 133 DG HOP3 H N N 134 DG HOP2 H N N 135 DG "H5'" H N N 136 DG "H5''" H N N 137 DG "H4'" H N N 138 DG "H3'" H N N 139 DG "HO3'" H N N 140 DG "H2'" H N N 141 DG "H2''" H N N 142 DG "H1'" H N N 143 DG H8 H N N 144 DG H1 H N N 145 DG H21 H N N 146 DG H22 H N N 147 DT OP3 O N N 148 DT P P N N 149 DT OP1 O N N 150 DT OP2 O N N 151 DT "O5'" O N N 152 DT "C5'" C N N 153 DT "C4'" C N R 154 DT "O4'" O N N 155 DT "C3'" C N S 156 DT "O3'" O N N 157 DT "C2'" C N N 158 DT "C1'" C N R 159 DT N1 N N N 160 DT C2 C N N 161 DT O2 O N N 162 DT N3 N N N 163 DT C4 C N N 164 DT O4 O N N 165 DT C5 C N N 166 DT C7 C N N 167 DT C6 C N N 168 DT HOP3 H N N 169 DT HOP2 H N N 170 DT "H5'" H N N 171 DT "H5''" H N N 172 DT "H4'" H N N 173 DT "H3'" H N N 174 DT "HO3'" H N N 175 DT "H2'" H N N 176 DT "H2''" H N N 177 DT "H1'" H N N 178 DT H3 H N N 179 DT H71 H N N 180 DT H72 H N N 181 DT H73 H N N 182 DT H6 H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6OG P OP1 doub N N 1 6OG P OP2 sing N N 2 6OG P "O5'" sing N N 3 6OG OP2 HOP2 sing N N 4 6OG "O5'" "C5'" sing N N 5 6OG N9 C4 sing Y N 6 6OG N9 C8 sing Y N 7 6OG N9 "C1'" sing N N 8 6OG C4 N3 sing Y N 9 6OG C4 C5 doub Y N 10 6OG N3 C2 doub Y N 11 6OG C2 N2 sing N N 12 6OG C2 N1 sing Y N 13 6OG N2 HN21 sing N N 14 6OG N2 HN22 sing N N 15 6OG N1 C6 doub Y N 16 6OG C6 O6 sing N N 17 6OG C6 C5 sing Y N 18 6OG O6 C sing N N 19 6OG C5 N7 sing Y N 20 6OG N7 C8 doub Y N 21 6OG C8 H8 sing N N 22 6OG "C2'" "C1'" sing N N 23 6OG "C2'" "C3'" sing N N 24 6OG "C2'" "H2'" sing N N 25 6OG "C2'" "H2''" sing N N 26 6OG "C5'" "C4'" sing N N 27 6OG "C5'" "H5'" sing N N 28 6OG "C5'" "H5''" sing N N 29 6OG "C4'" "O4'" sing N N 30 6OG "C4'" "C3'" sing N N 31 6OG "C4'" "H4'" sing N N 32 6OG "O4'" "C1'" sing N N 33 6OG "C1'" "H1'" sing N N 34 6OG "C3'" "O3'" sing N N 35 6OG "C3'" "H3'" sing N N 36 6OG "O3'" "HO3'" sing N N 37 6OG C H1 sing N N 38 6OG C H2 sing N N 39 6OG C H3 sing N N 40 6OG P OP3 sing N N 41 6OG OP3 HOP3 sing N N 42 DA OP3 P sing N N 43 DA OP3 HOP3 sing N N 44 DA P OP1 doub N N 45 DA P OP2 sing N N 46 DA P "O5'" sing N N 47 DA OP2 HOP2 sing N N 48 DA "O5'" "C5'" sing N N 49 DA "C5'" "C4'" sing N N 50 DA "C5'" "H5'" sing N N 51 DA "C5'" "H5''" sing N N 52 DA "C4'" "O4'" sing N N 53 DA "C4'" "C3'" sing N N 54 DA "C4'" "H4'" sing N N 55 DA "O4'" "C1'" sing N N 56 DA "C3'" "O3'" sing N N 57 DA "C3'" "C2'" sing N N 58 DA "C3'" "H3'" sing N N 59 DA "O3'" "HO3'" sing N N 60 DA "C2'" "C1'" sing N N 61 DA "C2'" "H2'" sing N N 62 DA "C2'" "H2''" sing N N 63 DA "C1'" N9 sing N N 64 DA "C1'" "H1'" sing N N 65 DA N9 C8 sing Y N 66 DA N9 C4 sing Y N 67 DA C8 N7 doub Y N 68 DA C8 H8 sing N N 69 DA N7 C5 sing Y N 70 DA C5 C6 sing Y N 71 DA C5 C4 doub Y N 72 DA C6 N6 sing N N 73 DA C6 N1 doub Y N 74 DA N6 H61 sing N N 75 DA N6 H62 sing N N 76 DA N1 C2 sing Y N 77 DA C2 N3 doub Y N 78 DA C2 H2 sing N N 79 DA N3 C4 sing Y N 80 DC OP3 P sing N N 81 DC OP3 HOP3 sing N N 82 DC P OP1 doub N N 83 DC P OP2 sing N N 84 DC P "O5'" sing N N 85 DC OP2 HOP2 sing N N 86 DC "O5'" "C5'" sing N N 87 DC "C5'" "C4'" sing N N 88 DC "C5'" "H5'" sing N N 89 DC "C5'" "H5''" sing N N 90 DC "C4'" "O4'" sing N N 91 DC "C4'" "C3'" sing N N 92 DC "C4'" "H4'" sing N N 93 DC "O4'" "C1'" sing N N 94 DC "C3'" "O3'" sing N N 95 DC "C3'" "C2'" sing N N 96 DC "C3'" "H3'" sing N N 97 DC "O3'" "HO3'" sing N N 98 DC "C2'" "C1'" sing N N 99 DC "C2'" "H2'" sing N N 100 DC "C2'" "H2''" sing N N 101 DC "C1'" N1 sing N N 102 DC "C1'" "H1'" sing N N 103 DC N1 C2 sing N N 104 DC N1 C6 sing N N 105 DC C2 O2 doub N N 106 DC C2 N3 sing N N 107 DC N3 C4 doub N N 108 DC C4 N4 sing N N 109 DC C4 C5 sing N N 110 DC N4 H41 sing N N 111 DC N4 H42 sing N N 112 DC C5 C6 doub N N 113 DC C5 H5 sing N N 114 DC C6 H6 sing N N 115 DG OP3 P sing N N 116 DG OP3 HOP3 sing N N 117 DG P OP1 doub N N 118 DG P OP2 sing N N 119 DG P "O5'" sing N N 120 DG OP2 HOP2 sing N N 121 DG "O5'" "C5'" sing N N 122 DG "C5'" "C4'" sing N N 123 DG "C5'" "H5'" sing N N 124 DG "C5'" "H5''" sing N N 125 DG "C4'" "O4'" sing N N 126 DG "C4'" "C3'" sing N N 127 DG "C4'" "H4'" sing N N 128 DG "O4'" "C1'" sing N N 129 DG "C3'" "O3'" sing N N 130 DG "C3'" "C2'" sing N N 131 DG "C3'" "H3'" sing N N 132 DG "O3'" "HO3'" sing N N 133 DG "C2'" "C1'" sing N N 134 DG "C2'" "H2'" sing N N 135 DG "C2'" "H2''" sing N N 136 DG "C1'" N9 sing N N 137 DG "C1'" "H1'" sing N N 138 DG N9 C8 sing Y N 139 DG N9 C4 sing Y N 140 DG C8 N7 doub Y N 141 DG C8 H8 sing N N 142 DG N7 C5 sing Y N 143 DG C5 C6 sing N N 144 DG C5 C4 doub Y N 145 DG C6 O6 doub N N 146 DG C6 N1 sing N N 147 DG N1 C2 sing N N 148 DG N1 H1 sing N N 149 DG C2 N2 sing N N 150 DG C2 N3 doub N N 151 DG N2 H21 sing N N 152 DG N2 H22 sing N N 153 DG N3 C4 sing N N 154 DT OP3 P sing N N 155 DT OP3 HOP3 sing N N 156 DT P OP1 doub N N 157 DT P OP2 sing N N 158 DT P "O5'" sing N N 159 DT OP2 HOP2 sing N N 160 DT "O5'" "C5'" sing N N 161 DT "C5'" "C4'" sing N N 162 DT "C5'" "H5'" sing N N 163 DT "C5'" "H5''" sing N N 164 DT "C4'" "O4'" sing N N 165 DT "C4'" "C3'" sing N N 166 DT "C4'" "H4'" sing N N 167 DT "O4'" "C1'" sing N N 168 DT "C3'" "O3'" sing N N 169 DT "C3'" "C2'" sing N N 170 DT "C3'" "H3'" sing N N 171 DT "O3'" "HO3'" sing N N 172 DT "C2'" "C1'" sing N N 173 DT "C2'" "H2'" sing N N 174 DT "C2'" "H2''" sing N N 175 DT "C1'" N1 sing N N 176 DT "C1'" "H1'" sing N N 177 DT N1 C2 sing N N 178 DT N1 C6 sing N N 179 DT C2 O2 doub N N 180 DT C2 N3 sing N N 181 DT N3 C4 sing N N 182 DT N3 H3 sing N N 183 DT C4 O4 doub N N 184 DT C4 C5 sing N N 185 DT C5 C7 sing N N 186 DT C5 C6 doub N N 187 DT C7 H71 sing N N 188 DT C7 H72 sing N N 189 DT C7 H73 sing N N 190 DT C6 H6 sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D27 'b-form double helix' 1D27 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.432 -0.222 0.075 4.987 -9.595 -0.738 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.318 -0.177 0.224 -1.224 -11.716 -3.321 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.470 -0.164 0.175 -3.921 -0.970 -2.730 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A 6OG 4 1_555 B DT 9 1_555 0.019 -0.037 -0.073 7.788 -10.514 2.575 4 A_6OG4:DT21_B A 4 ? B 21 ? ? ? 1 A DA 5 1_555 B DT 8 1_555 0.083 -0.060 0.188 5.476 -18.178 5.569 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.014 -0.284 0.360 5.915 -18.635 5.940 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.188 -0.122 0.381 -0.507 -20.133 4.301 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.031 -0.409 -0.107 -0.833 -20.276 3.586 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DT 9 1_555 B 6OG 4 1_555 0.264 -0.200 0.012 -11.234 -12.461 -2.205 9 A_DT9:6OG16_B A 9 ? B 16 ? 28 1 1 A DG 10 1_555 B DC 3 1_555 0.013 -0.261 0.310 7.209 -0.899 -1.664 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 -0.662 -0.376 0.436 3.288 -18.188 -5.063 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 0.025 -0.360 0.553 7.433 -5.302 -6.342 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.261 0.208 3.531 -1.399 1.734 39.846 0.088 0.209 3.544 2.542 2.050 39.906 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.772 0.229 3.506 1.813 -2.687 37.986 0.716 -0.935 3.514 -4.119 -2.779 38.119 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A 6OG 4 1_555 B DT 9 1_555 -0.044 0.453 3.156 2.569 6.180 30.852 -0.291 0.549 3.171 11.449 -4.760 31.552 3 AA_DC36OG4:DT21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A 6OG 4 1_555 B DT 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.030 -0.117 3.366 -1.779 1.212 34.399 -0.390 -0.233 3.357 2.048 3.004 34.464 4 AA_6OG4DA5:DT20DT21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.064 -0.243 3.162 -1.817 -0.841 37.750 -0.271 -0.128 3.166 -1.299 2.806 37.801 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.105 -0.622 3.446 1.302 -2.559 30.946 -0.639 0.068 3.487 -4.783 -2.434 31.075 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.233 -0.136 3.161 3.825 2.128 38.831 -0.450 0.791 3.114 3.189 -5.731 39.068 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DT 9 1_555 B 6OG 4 1_555 -0.230 0.000 3.602 -1.403 -4.602 41.413 0.534 0.160 3.587 -6.482 1.977 41.680 8 AA_DT8DT9:6OG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DT 9 1_555 B 6OG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.424 0.555 3.008 -3.780 1.002 28.709 0.907 -1.611 2.946 2.010 7.579 28.968 9 AA_DT9DG10:DC156OG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.161 0.303 3.547 -2.831 -8.560 35.208 1.789 1.433 3.462 -13.872 4.588 36.309 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.528 0.309 3.387 2.194 -3.409 41.365 0.810 -0.504 3.374 -4.812 -3.097 41.554 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1D27 _atom_sites.fract_transf_matrix[1][1] 0.039308 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024570 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015154 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_