data_1D30 # _entry.id 1D30 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D30 pdb_00001d30 10.2210/pdb1d30/pdb RCSB GDL008 ? ? WWPDB D_1000172635 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D30 _pdbx_database_status.recvd_initial_deposition_date 1991-01-04 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Larsen, T.' 1 'Goodsell, D.S.' 2 'Cascio, D.' 3 'Grzeskowiak, K.' 4 'Dickerson, R.E.' 5 # _citation.id primary _citation.title 'The structure of DAPI bound to DNA.' _citation.journal_abbrev J.Biomol.Struct.Dyn. _citation.journal_volume 7 _citation.page_first 477 _citation.page_last 491 _citation.year 1989 _citation.journal_id_ASTM JBSDD6 _citation.country US _citation.journal_id_ISSN 0739-1102 _citation.journal_id_CSD 0646 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 2627296 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Larsen, T.A.' 1 ? primary 'Goodsell, D.S.' 2 ? primary 'Cascio, D.' 3 ? primary 'Grzeskowiak, K.' 4 ? primary 'Dickerson, R.E.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn '6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE' 277.324 1 ? ? ? ? 3 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE' DAP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DAP non-polymer . '6-AMIDINE-2-(4-AMIDINO-PHENYL)INDOLE' ? 'C16 H15 N5' 277.324 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DAP 1 25 25 DAP DAP A . D 3 HOH 1 26 26 HOH HOH A . D 3 HOH 2 28 28 HOH HOH A . D 3 HOH 3 30 30 HOH HOH A . D 3 HOH 4 31 31 HOH HOH A . D 3 HOH 5 32 32 HOH HOH A . D 3 HOH 6 33 33 HOH HOH A . D 3 HOH 7 35 35 HOH HOH A . D 3 HOH 8 36 36 HOH HOH A . D 3 HOH 9 37 37 HOH HOH A . D 3 HOH 10 38 38 HOH HOH A . D 3 HOH 11 39 39 HOH HOH A . D 3 HOH 12 42 42 HOH HOH A . D 3 HOH 13 43 43 HOH HOH A . D 3 HOH 14 46 46 HOH HOH A . D 3 HOH 15 47 47 HOH HOH A . D 3 HOH 16 48 48 HOH HOH A . E 3 HOH 1 27 27 HOH HOH B . E 3 HOH 2 29 29 HOH HOH B . E 3 HOH 3 34 34 HOH HOH B . E 3 HOH 4 40 40 HOH HOH B . E 3 HOH 5 41 41 HOH HOH B . E 3 HOH 6 44 44 HOH HOH B . E 3 HOH 7 45 45 HOH HOH B . E 3 HOH 8 49 49 HOH HOH B . E 3 HOH 9 50 50 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D30 _cell.length_a 25.350 _cell.length_b 40.710 _cell.length_c 66.530 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D30 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1D30 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 47.50 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 'MG ACETATE' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SDMS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D30 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.400 _reflns.number_obs 2541 _reflns.number_all 9292 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D30 _refine.ls_number_reflns_obs 2541 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 2.400 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2220000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 532 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low 10.000 # _database_PDB_matrix.entry_id 1D30 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D30 _struct.title 'THE STRUCTURE OF DAPI BOUND TO DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D30 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D30 _struct_ref.pdbx_db_accession 1D30 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D30 A 1 ? 12 ? 1D30 1 ? 12 ? 1 12 2 1 1D30 B 1 ? 12 ? 1D30 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DAP 25 ? 10 'BINDING SITE FOR RESIDUE DAP A 25' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 10 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 10 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 10 DC A 9 ? DC A 9 . ? 1_555 ? 5 AC1 10 HOH D . ? HOH A 26 . ? 1_555 ? 6 AC1 10 DA B 5 ? DA B 17 . ? 1_555 ? 7 AC1 10 DA B 6 ? DA B 18 . ? 1_555 ? 8 AC1 10 DT B 7 ? DT B 19 . ? 1_555 ? 9 AC1 10 DT B 8 ? DT B 20 . ? 1_555 ? 10 AC1 10 DC B 9 ? DC B 21 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.674 1.593 0.081 0.010 N 2 1 "O3'" A DG 4 ? ? P A DA 5 ? ? 1.716 1.607 0.109 0.012 Y 3 1 C4 A DA 6 ? ? C5 A DA 6 ? ? 1.335 1.383 -0.048 0.007 N 4 1 C5 A DA 6 ? ? N7 A DA 6 ? ? 1.425 1.388 0.037 0.006 N 5 1 "O3'" A DA 6 ? ? P A DT 7 ? ? 1.682 1.607 0.075 0.012 Y 6 1 "O3'" A DT 7 ? ? "C3'" A DT 7 ? ? 1.383 1.419 -0.036 0.006 N 7 1 C4 A DT 7 ? ? O4 A DT 7 ? ? 1.289 1.228 0.061 0.009 N 8 1 P A DT 8 ? ? OP1 A DT 8 ? ? 1.336 1.485 -0.149 0.017 N 9 1 P A DT 8 ? ? "O5'" A DT 8 ? ? 1.684 1.593 0.091 0.010 N 10 1 "O4'" A DT 8 ? ? "C4'" A DT 8 ? ? 1.378 1.446 -0.068 0.010 N 11 1 "O3'" A DT 8 ? ? "C3'" A DT 8 ? ? 1.370 1.419 -0.049 0.006 N 12 1 N3 A DT 8 ? ? C4 A DT 8 ? ? 1.324 1.382 -0.058 0.008 N 13 1 P B DG 14 ? ? "O5'" B DG 14 ? ? 1.677 1.593 0.084 0.010 N 14 1 C6 B DG 14 ? ? N1 B DG 14 ? ? 1.339 1.391 -0.052 0.007 N 15 1 C8 B DG 14 ? ? N9 B DG 14 ? ? 1.328 1.374 -0.046 0.007 N 16 1 N1 B DC 15 ? ? C2 B DC 15 ? ? 1.330 1.397 -0.067 0.010 N 17 1 "O4'" B DG 16 ? ? "C4'" B DG 16 ? ? 1.384 1.446 -0.062 0.010 N 18 1 "C2'" B DT 19 ? ? "C1'" B DT 19 ? ? 1.455 1.518 -0.063 0.010 N 19 1 C4 B DT 19 ? ? O4 B DT 19 ? ? 1.283 1.228 0.055 0.009 N 20 1 C6 B DT 20 ? ? N1 B DT 20 ? ? 1.323 1.378 -0.055 0.007 N 21 1 C4 B DT 20 ? ? O4 B DT 20 ? ? 1.286 1.228 0.058 0.009 N 22 1 P B DG 22 ? ? "O5'" B DG 22 ? ? 1.667 1.593 0.074 0.010 N 23 1 C5 B DG 22 ? ? N7 B DG 22 ? ? 1.434 1.388 0.046 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 92.18 104.50 -12.32 0.40 N 2 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "C3'" A DC 1 ? ? 126.49 115.70 10.79 1.20 N 3 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 115.25 110.30 4.95 0.70 N 4 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 116.23 108.30 7.93 0.30 N 5 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 126.77 118.90 7.87 0.60 N 6 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 113.06 121.90 -8.84 0.70 N 7 1 "O3'" A DC 1 ? ? P A DG 2 ? ? OP1 A DG 2 ? ? 89.79 105.20 -15.41 2.20 Y 8 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 102.58 109.40 -6.82 0.80 N 9 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.69 108.30 2.39 0.30 N 10 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 106.03 116.20 -10.17 0.90 N 11 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 127.69 119.90 7.79 0.70 N 12 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 115.48 119.90 -4.42 0.60 N 13 1 "O5'" A DC 3 ? ? P A DC 3 ? ? OP1 A DC 3 ? ? 133.36 110.70 22.66 1.20 N 14 1 "O5'" A DC 3 ? ? P A DC 3 ? ? OP2 A DC 3 ? ? 95.41 105.70 -10.29 0.90 N 15 1 "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 123.30 115.70 7.60 1.20 N 16 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 114.97 110.30 4.67 0.70 N 17 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? "C2'" A DC 3 ? ? 100.72 105.90 -5.18 0.80 N 18 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 113.57 108.30 5.27 0.30 N 19 1 C5 A DC 3 ? ? C6 A DC 3 ? ? N1 A DC 3 ? ? 124.03 121.00 3.03 0.50 N 20 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 125.00 118.90 6.10 0.60 N 21 1 "O3'" A DC 3 ? ? P A DG 4 ? ? "O5'" A DG 4 ? ? 89.77 104.00 -14.23 1.90 Y 22 1 "O3'" A DC 3 ? ? P A DG 4 ? ? OP1 A DG 4 ? ? 91.30 105.20 -13.90 2.20 Y 23 1 OP1 A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 134.07 119.60 14.47 1.50 N 24 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 118.96 110.70 8.26 1.20 N 25 1 "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? "O4'" A DG 4 ? ? 116.49 109.80 6.69 1.10 N 26 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 100.39 105.90 -5.51 0.80 N 27 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.71 108.30 4.41 0.30 N 28 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 108.43 111.90 -3.47 0.50 N 29 1 N3 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 131.69 128.60 3.09 0.50 N 30 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 114.26 110.80 3.46 0.40 N 31 1 C5 A DG 4 ? ? N7 A DG 4 ? ? C8 A DG 4 ? ? 99.33 104.30 -4.97 0.50 N 32 1 N7 A DG 4 ? ? C8 A DG 4 ? ? N9 A DG 4 ? ? 116.60 113.10 3.50 0.50 N 33 1 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 126.78 119.90 6.88 0.60 N 34 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 123.17 128.60 -5.43 0.60 N 35 1 "O3'" A DG 4 ? ? P A DA 5 ? ? OP1 A DA 5 ? ? 85.10 105.20 -20.10 2.20 Y 36 1 "O5'" A DA 5 ? ? "C5'" A DA 5 ? ? "C4'" A DA 5 ? ? 104.15 109.40 -5.25 0.80 N 37 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? "C2'" A DA 5 ? ? 100.75 105.90 -5.15 0.80 N 38 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 117.70 108.30 9.40 0.30 N 39 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 124.88 129.30 -4.42 0.50 N 40 1 C2 A DA 5 ? ? N3 A DA 5 ? ? C4 A DA 5 ? ? 114.95 110.60 4.35 0.50 N 41 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 112.50 118.60 -6.10 0.60 N 42 1 C5 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 129.01 123.70 5.31 0.80 N 43 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 152.37 119.70 32.67 1.20 Y 44 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 135.01 119.60 15.41 1.50 N 45 1 "O5'" A DA 6 ? ? P A DA 6 ? ? OP1 A DA 6 ? ? 89.77 105.70 -15.93 0.90 N 46 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 115.96 108.30 7.66 0.30 N 47 1 N9 A DA 6 ? ? C4 A DA 6 ? ? C5 A DA 6 ? ? 108.40 105.80 2.60 0.40 N 48 1 "O3'" A DA 6 ? ? P A DT 7 ? ? "O5'" A DT 7 ? ? 89.98 104.00 -14.02 1.90 Y 49 1 "O3'" A DA 6 ? ? P A DT 7 ? ? OP1 A DT 7 ? ? 87.02 105.20 -18.18 2.20 Y 50 1 OP1 A DT 7 ? ? P A DT 7 ? ? OP2 A DT 7 ? ? 152.27 119.60 32.67 1.50 N 51 1 "O5'" A DT 7 ? ? P A DT 7 ? ? OP1 A DT 7 ? ? 100.02 105.70 -5.68 0.90 N 52 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 96.99 105.90 -8.91 0.80 N 53 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.82 108.30 3.52 0.30 N 54 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 118.25 114.60 3.65 0.60 N 55 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 121.06 127.20 -6.14 0.60 N 56 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 119.14 115.20 3.94 0.60 N 57 1 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 115.56 122.30 -6.74 0.60 N 58 1 C5 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 120.61 124.90 -4.29 0.70 N 59 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 131.88 119.70 12.18 1.20 Y 60 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 139.36 119.60 19.76 1.50 N 61 1 "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 102.35 109.40 -7.05 0.80 N 62 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 97.35 105.90 -8.55 0.80 N 63 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 113.12 108.30 4.82 0.30 N 64 1 C6 A DT 8 ? ? N1 A DT 8 ? ? C2 A DT 8 ? ? 116.29 121.30 -5.01 0.50 N 65 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 119.13 114.60 4.53 0.60 N 66 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 123.35 127.20 -3.85 0.60 N 67 1 N1 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 117.72 123.10 -5.38 0.80 N 68 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 127.60 119.00 8.60 0.60 N 69 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 114.78 122.90 -8.12 0.60 N 70 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 147.18 119.70 27.48 1.20 Y 71 1 OP1 A DC 9 ? ? P A DC 9 ? ? OP2 A DC 9 ? ? 138.27 119.60 18.67 1.50 N 72 1 "O5'" A DC 9 ? ? "C5'" A DC 9 ? ? "C4'" A DC 9 ? ? 101.83 109.40 -7.57 0.80 N 73 1 "C1'" A DC 9 ? ? "O4'" A DC 9 ? ? "C4'" A DC 9 ? ? 115.12 110.30 4.82 0.70 N 74 1 "C3'" A DC 9 ? ? "C2'" A DC 9 ? ? "C1'" A DC 9 ? ? 110.41 102.50 7.91 1.20 N 75 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? "C2'" A DC 9 ? ? 92.88 105.90 -13.02 0.80 N 76 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 97.07 108.00 -10.93 0.70 N 77 1 N3 A DC 9 ? ? C4 A DC 9 ? ? C5 A DC 9 ? ? 118.61 121.90 -3.29 0.40 N 78 1 "O4'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 100.66 104.50 -3.84 0.40 N 79 1 "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? 96.92 102.20 -5.28 0.70 N 80 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.28 102.40 -5.12 0.80 N 81 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 119.98 108.30 11.68 0.30 N 82 1 C5 A DG 10 ? ? C6 A DG 10 ? ? N1 A DG 10 ? ? 115.24 111.50 3.74 0.50 N 83 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP1 A DC 11 ? ? 93.77 105.70 -11.93 0.90 N 84 1 P A DC 11 ? ? "O5'" A DC 11 ? ? "C5'" A DC 11 ? ? 110.35 120.90 -10.55 1.60 N 85 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 99.49 105.90 -6.41 0.80 N 86 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 100.52 108.00 -7.48 0.70 N 87 1 N3 A DC 11 ? ? C4 A DC 11 ? ? C5 A DC 11 ? ? 117.98 121.90 -3.92 0.40 N 88 1 N3 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 126.34 118.00 8.34 0.70 N 89 1 C5 A DC 11 ? ? C4 A DC 11 ? ? N4 A DC 11 ? ? 115.66 120.20 -4.54 0.70 N 90 1 OP1 A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 133.51 119.60 13.91 1.50 N 91 1 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 100.66 109.40 -8.74 0.80 N 92 1 P A DG 12 ? ? "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? 131.92 120.90 11.02 1.60 N 93 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? "C2'" A DG 12 ? ? 110.40 106.80 3.60 0.50 N 94 1 C6 A DG 12 ? ? N1 A DG 12 ? ? C2 A DG 12 ? ? 120.11 125.10 -4.99 0.60 N 95 1 C5 A DG 12 ? ? C6 A DG 12 ? ? N1 A DG 12 ? ? 115.98 111.50 4.48 0.50 N 96 1 N1 A DG 12 ? ? C6 A DG 12 ? ? O6 A DG 12 ? ? 115.20 119.90 -4.70 0.60 N 97 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 101.60 109.40 -7.80 0.80 N 98 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? "C2'" B DC 13 ? ? 99.09 105.90 -6.81 0.80 N 99 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 99.48 108.00 -8.52 0.70 N 100 1 C2 B DC 13 ? ? N3 B DC 13 ? ? C4 B DC 13 ? ? 123.00 119.90 3.10 0.50 N 101 1 N3 B DC 13 ? ? C2 B DC 13 ? ? O2 B DC 13 ? ? 127.45 121.90 5.55 0.70 N 102 1 N3 B DC 13 ? ? C4 B DC 13 ? ? N4 B DC 13 ? ? 124.93 118.00 6.93 0.70 N 103 1 C5 B DC 13 ? ? C4 B DC 13 ? ? N4 B DC 13 ? ? 114.00 120.20 -6.20 0.70 N 104 1 "C3'" B DC 13 ? ? "O3'" B DC 13 ? ? P B DG 14 ? ? 139.82 119.70 20.12 1.20 Y 105 1 OP1 B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 144.34 119.60 24.74 1.50 N 106 1 "O5'" B DG 14 ? ? P B DG 14 ? ? OP1 B DG 14 ? ? 90.70 105.70 -15.00 0.90 N 107 1 P B DG 14 ? ? "O5'" B DG 14 ? ? "C5'" B DG 14 ? ? 109.51 120.90 -11.39 1.60 N 108 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 111.23 106.00 5.23 0.60 N 109 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 111.92 106.80 5.12 0.50 N 110 1 "O3'" B DG 14 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 118.97 110.50 8.47 1.10 Y 111 1 OP1 B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 137.58 119.60 17.98 1.50 N 112 1 "O5'" B DC 15 ? ? P B DC 15 ? ? OP1 B DC 15 ? ? 97.83 105.70 -7.87 0.90 N 113 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 97.09 105.90 -8.81 0.80 N 114 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 102.21 108.00 -5.79 0.70 N 115 1 C5 B DC 15 ? ? C6 B DC 15 ? ? N1 B DC 15 ? ? 124.25 121.00 3.25 0.50 N 116 1 "O3'" B DC 15 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 118.44 110.50 7.94 1.10 Y 117 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 113.21 108.30 4.91 0.30 N 118 1 C5 B DG 16 ? ? C6 B DG 16 ? ? N1 B DG 16 ? ? 115.44 111.50 3.94 0.50 N 119 1 N1 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 115.47 119.90 -4.43 0.60 N 120 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 151.23 119.70 31.53 1.20 Y 121 1 OP1 B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 110.12 119.60 -9.48 1.50 N 122 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP2 B DA 17 ? ? 120.98 110.70 10.28 1.20 N 123 1 "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? "O4'" B DA 17 ? ? 116.51 109.80 6.71 1.10 N 124 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? "C2'" B DA 17 ? ? 100.53 105.90 -5.37 0.80 N 125 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 123.74 108.30 15.44 0.30 N 126 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 126.73 118.60 8.13 0.60 N 127 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 120.00 129.30 -9.30 0.50 N 128 1 C2 B DA 17 ? ? N3 B DA 17 ? ? C4 B DA 17 ? ? 115.00 110.60 4.40 0.50 N 129 1 C5 B DA 17 ? ? C6 B DA 17 ? ? N1 B DA 17 ? ? 114.30 117.70 -3.40 0.50 N 130 1 C5 B DA 17 ? ? N7 B DA 17 ? ? C8 B DA 17 ? ? 99.39 103.90 -4.51 0.50 N 131 1 N7 B DA 17 ? ? C8 B DA 17 ? ? N9 B DA 17 ? ? 117.93 113.80 4.13 0.50 N 132 1 N1 B DA 17 ? ? C6 B DA 17 ? ? N6 B DA 17 ? ? 126.12 118.60 7.52 0.60 N 133 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DA 18 ? ? 129.75 119.70 10.05 1.20 Y 134 1 "O5'" B DA 18 ? ? P B DA 18 ? ? OP2 B DA 18 ? ? 124.68 110.70 13.98 1.20 N 135 1 "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? "C3'" B DA 18 ? ? 99.16 104.50 -5.34 0.40 N 136 1 "C1'" B DA 18 ? ? "O4'" B DA 18 ? ? "C4'" B DA 18 ? ? 116.84 110.30 6.54 0.70 N 137 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? "C2'" B DA 18 ? ? 99.47 105.90 -6.43 0.80 N 138 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 123.50 108.30 15.20 0.30 N 139 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 124.08 118.60 5.48 0.60 N 140 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 121.19 129.30 -8.11 0.50 N 141 1 C2 B DA 18 ? ? N3 B DA 18 ? ? C4 B DA 18 ? ? 115.38 110.60 4.78 0.50 N 142 1 OP1 B DT 19 ? ? P B DT 19 ? ? OP2 B DT 19 ? ? 130.81 119.60 11.21 1.50 N 143 1 "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? 101.18 104.50 -3.32 0.40 N 144 1 "C1'" B DT 19 ? ? "O4'" B DT 19 ? ? "C4'" B DT 19 ? ? 103.60 110.10 -6.50 1.00 N 145 1 N1 B DT 19 ? ? C2 B DT 19 ? ? N3 B DT 19 ? ? 118.27 114.60 3.67 0.60 N 146 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 120.16 127.20 -7.04 0.60 N 147 1 N3 B DT 19 ? ? C4 B DT 19 ? ? C5 B DT 19 ? ? 121.22 115.20 6.02 0.60 N 148 1 N3 B DT 19 ? ? C4 B DT 19 ? ? O4 B DT 19 ? ? 115.46 119.90 -4.44 0.60 N 149 1 C4 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 124.96 119.00 5.96 0.60 N 150 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 118.02 122.90 -4.88 0.60 N 151 1 "O5'" B DT 20 ? ? P B DT 20 ? ? OP2 B DT 20 ? ? 100.16 105.70 -5.54 0.90 N 152 1 "O4'" B DT 20 ? ? "C4'" B DT 20 ? ? "C3'" B DT 20 ? ? 109.87 106.00 3.87 0.60 N 153 1 "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? "O4'" B DT 20 ? ? 96.84 109.30 -12.46 1.90 N 154 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 100.63 108.00 -7.37 0.70 N 155 1 N3 B DT 20 ? ? C4 B DT 20 ? ? C5 B DT 20 ? ? 119.51 115.20 4.31 0.60 N 156 1 C5 B DT 20 ? ? C4 B DT 20 ? ? O4 B DT 20 ? ? 118.71 124.90 -6.19 0.70 N 157 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DC 21 ? ? 141.57 119.70 21.87 1.20 Y 158 1 "O3'" B DT 20 ? ? P B DC 21 ? ? OP2 B DC 21 ? ? 118.43 110.50 7.93 1.10 Y 159 1 "O5'" B DC 21 ? ? P B DC 21 ? ? OP2 B DC 21 ? ? 94.48 105.70 -11.22 0.90 N 160 1 "C4'" B DC 21 ? ? "C3'" B DC 21 ? ? "C2'" B DC 21 ? ? 95.96 102.20 -6.24 0.70 N 161 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? "C2'" B DC 21 ? ? 94.63 105.90 -11.27 0.80 N 162 1 C2 B DC 21 ? ? N3 B DC 21 ? ? C4 B DC 21 ? ? 122.96 119.90 3.06 0.50 N 163 1 N3 B DC 21 ? ? C4 B DC 21 ? ? C5 B DC 21 ? ? 118.19 121.90 -3.71 0.40 N 164 1 N1 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 124.82 118.90 5.92 0.60 N 165 1 N3 B DC 21 ? ? C2 B DC 21 ? ? O2 B DC 21 ? ? 117.56 121.90 -4.34 0.70 N 166 1 "C5'" B DG 22 ? ? "C4'" B DG 22 ? ? "O4'" B DG 22 ? ? 121.18 109.80 11.38 1.10 N 167 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 97.08 102.40 -5.32 0.80 N 168 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 117.21 108.30 8.91 0.30 N 169 1 N1 B DG 22 ? ? C2 B DG 22 ? ? N2 B DG 22 ? ? 106.04 116.20 -10.16 0.90 N 170 1 N3 B DG 22 ? ? C2 B DG 22 ? ? N2 B DG 22 ? ? 128.97 119.90 9.07 0.70 N 171 1 OP1 B DC 23 ? ? P B DC 23 ? ? OP2 B DC 23 ? ? 132.14 119.60 12.54 1.50 N 172 1 "O5'" B DC 23 ? ? P B DC 23 ? ? OP1 B DC 23 ? ? 99.98 105.70 -5.72 0.90 N 173 1 N1 B DC 23 ? ? "C1'" B DC 23 ? ? "C2'" B DC 23 ? ? 125.89 114.30 11.59 1.40 N 174 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 110.84 108.30 2.54 0.30 N 175 1 C6 B DC 23 ? ? N1 B DC 23 ? ? C2 B DC 23 ? ? 117.77 120.30 -2.53 0.40 N 176 1 C5 B DC 23 ? ? C6 B DC 23 ? ? N1 B DC 23 ? ? 126.14 121.00 5.14 0.50 N 177 1 N3 B DC 23 ? ? C4 B DC 23 ? ? N4 B DC 23 ? ? 112.57 118.00 -5.43 0.70 N 178 1 C5 B DC 23 ? ? C4 B DC 23 ? ? N4 B DC 23 ? ? 125.42 120.20 5.22 0.70 N 179 1 C6 B DC 23 ? ? N1 B DC 23 ? ? "C1'" B DC 23 ? ? 129.73 120.80 8.93 1.20 N 180 1 C2 B DC 23 ? ? N1 B DC 23 ? ? "C1'" B DC 23 ? ? 111.86 118.80 -6.94 1.10 N 181 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 105.26 119.60 -14.34 1.50 N 182 1 "O5'" B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 123.05 110.70 12.35 1.20 N 183 1 "O4'" B DG 24 ? ? "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? 100.22 104.50 -4.28 0.40 N 184 1 "C4'" B DG 24 ? ? "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? 96.67 102.20 -5.53 0.70 N 185 1 "C3'" B DG 24 ? ? "C2'" B DG 24 ? ? "C1'" B DG 24 ? ? 97.38 102.40 -5.02 0.80 N 186 1 N9 B DG 24 ? ? "C1'" B DG 24 ? ? "C2'" B DG 24 ? ? 123.40 114.30 9.10 1.40 N 187 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 100.30 108.00 -7.70 0.70 N 188 1 C6 B DG 24 ? ? N1 B DG 24 ? ? C2 B DG 24 ? ? 120.92 125.10 -4.18 0.60 N 189 1 N9 B DG 24 ? ? C4 B DG 24 ? ? C5 B DG 24 ? ? 107.94 105.40 2.54 0.40 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DAP N1 N Y N 37 DAP C2 C Y N 38 DAP C3 C Y N 39 DAP C4 C Y N 40 DAP C5 C Y N 41 DAP C6 C Y N 42 DAP C7 C Y N 43 DAP C8 C Y N 44 DAP C9 C Y N 45 DAP C10 C N N 46 DAP N2 N N N 47 DAP N3 N N N 48 DAP "C1'" C Y N 49 DAP "C2'" C Y N 50 DAP "C3'" C Y N 51 DAP "C4'" C Y N 52 DAP "C5'" C Y N 53 DAP "C6'" C Y N 54 DAP C11 C N N 55 DAP N4 N N N 56 DAP N5 N N N 57 DAP HN1 H N N 58 DAP H3 H N N 59 DAP H4 H N N 60 DAP H5 H N N 61 DAP H7 H N N 62 DAP HN2 H N N 63 DAP HN31 H N N 64 DAP HN32 H N N 65 DAP "H2'" H N N 66 DAP "H3'" H N N 67 DAP "H5'" H N N 68 DAP "H6'" H N N 69 DAP HN4 H N N 70 DAP HN51 H N N 71 DAP HN52 H N N 72 DC OP3 O N N 73 DC P P N N 74 DC OP1 O N N 75 DC OP2 O N N 76 DC "O5'" O N N 77 DC "C5'" C N N 78 DC "C4'" C N R 79 DC "O4'" O N N 80 DC "C3'" C N S 81 DC "O3'" O N N 82 DC "C2'" C N N 83 DC "C1'" C N R 84 DC N1 N N N 85 DC C2 C N N 86 DC O2 O N N 87 DC N3 N N N 88 DC C4 C N N 89 DC N4 N N N 90 DC C5 C N N 91 DC C6 C N N 92 DC HOP3 H N N 93 DC HOP2 H N N 94 DC "H5'" H N N 95 DC "H5''" H N N 96 DC "H4'" H N N 97 DC "H3'" H N N 98 DC "HO3'" H N N 99 DC "H2'" H N N 100 DC "H2''" H N N 101 DC "H1'" H N N 102 DC H41 H N N 103 DC H42 H N N 104 DC H5 H N N 105 DC H6 H N N 106 DG OP3 O N N 107 DG P P N N 108 DG OP1 O N N 109 DG OP2 O N N 110 DG "O5'" O N N 111 DG "C5'" C N N 112 DG "C4'" C N R 113 DG "O4'" O N N 114 DG "C3'" C N S 115 DG "O3'" O N N 116 DG "C2'" C N N 117 DG "C1'" C N R 118 DG N9 N Y N 119 DG C8 C Y N 120 DG N7 N Y N 121 DG C5 C Y N 122 DG C6 C N N 123 DG O6 O N N 124 DG N1 N N N 125 DG C2 C N N 126 DG N2 N N N 127 DG N3 N N N 128 DG C4 C Y N 129 DG HOP3 H N N 130 DG HOP2 H N N 131 DG "H5'" H N N 132 DG "H5''" H N N 133 DG "H4'" H N N 134 DG "H3'" H N N 135 DG "HO3'" H N N 136 DG "H2'" H N N 137 DG "H2''" H N N 138 DG "H1'" H N N 139 DG H8 H N N 140 DG H1 H N N 141 DG H21 H N N 142 DG H22 H N N 143 DT OP3 O N N 144 DT P P N N 145 DT OP1 O N N 146 DT OP2 O N N 147 DT "O5'" O N N 148 DT "C5'" C N N 149 DT "C4'" C N R 150 DT "O4'" O N N 151 DT "C3'" C N S 152 DT "O3'" O N N 153 DT "C2'" C N N 154 DT "C1'" C N R 155 DT N1 N N N 156 DT C2 C N N 157 DT O2 O N N 158 DT N3 N N N 159 DT C4 C N N 160 DT O4 O N N 161 DT C5 C N N 162 DT C7 C N N 163 DT C6 C N N 164 DT HOP3 H N N 165 DT HOP2 H N N 166 DT "H5'" H N N 167 DT "H5''" H N N 168 DT "H4'" H N N 169 DT "H3'" H N N 170 DT "HO3'" H N N 171 DT "H2'" H N N 172 DT "H2''" H N N 173 DT "H1'" H N N 174 DT H3 H N N 175 DT H71 H N N 176 DT H72 H N N 177 DT H73 H N N 178 DT H6 H N N 179 HOH O O N N 180 HOH H1 H N N 181 HOH H2 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DAP N1 C2 sing Y N 39 DAP N1 C8 sing Y N 40 DAP N1 HN1 sing N N 41 DAP C2 C3 doub Y N 42 DAP C2 "C1'" sing Y N 43 DAP C3 C9 sing Y N 44 DAP C3 H3 sing N N 45 DAP C4 C5 doub Y N 46 DAP C4 C9 sing Y N 47 DAP C4 H4 sing N N 48 DAP C5 C6 sing Y N 49 DAP C5 H5 sing N N 50 DAP C6 C7 doub Y N 51 DAP C6 C10 sing N N 52 DAP C7 C8 sing Y N 53 DAP C7 H7 sing N N 54 DAP C8 C9 doub Y N 55 DAP C10 N2 doub N N 56 DAP C10 N3 sing N N 57 DAP N2 HN2 sing N N 58 DAP N3 HN31 sing N N 59 DAP N3 HN32 sing N N 60 DAP "C1'" "C2'" doub Y N 61 DAP "C1'" "C6'" sing Y N 62 DAP "C2'" "C3'" sing Y N 63 DAP "C2'" "H2'" sing N N 64 DAP "C3'" "C4'" doub Y N 65 DAP "C3'" "H3'" sing N N 66 DAP "C4'" "C5'" sing Y N 67 DAP "C4'" C11 sing N N 68 DAP "C5'" "C6'" doub Y N 69 DAP "C5'" "H5'" sing N N 70 DAP "C6'" "H6'" sing N N 71 DAP C11 N4 doub N N 72 DAP C11 N5 sing N N 73 DAP N4 HN4 sing N N 74 DAP N5 HN51 sing N N 75 DAP N5 HN52 sing N N 76 DC OP3 P sing N N 77 DC OP3 HOP3 sing N N 78 DC P OP1 doub N N 79 DC P OP2 sing N N 80 DC P "O5'" sing N N 81 DC OP2 HOP2 sing N N 82 DC "O5'" "C5'" sing N N 83 DC "C5'" "C4'" sing N N 84 DC "C5'" "H5'" sing N N 85 DC "C5'" "H5''" sing N N 86 DC "C4'" "O4'" sing N N 87 DC "C4'" "C3'" sing N N 88 DC "C4'" "H4'" sing N N 89 DC "O4'" "C1'" sing N N 90 DC "C3'" "O3'" sing N N 91 DC "C3'" "C2'" sing N N 92 DC "C3'" "H3'" sing N N 93 DC "O3'" "HO3'" sing N N 94 DC "C2'" "C1'" sing N N 95 DC "C2'" "H2'" sing N N 96 DC "C2'" "H2''" sing N N 97 DC "C1'" N1 sing N N 98 DC "C1'" "H1'" sing N N 99 DC N1 C2 sing N N 100 DC N1 C6 sing N N 101 DC C2 O2 doub N N 102 DC C2 N3 sing N N 103 DC N3 C4 doub N N 104 DC C4 N4 sing N N 105 DC C4 C5 sing N N 106 DC N4 H41 sing N N 107 DC N4 H42 sing N N 108 DC C5 C6 doub N N 109 DC C5 H5 sing N N 110 DC C6 H6 sing N N 111 DG OP3 P sing N N 112 DG OP3 HOP3 sing N N 113 DG P OP1 doub N N 114 DG P OP2 sing N N 115 DG P "O5'" sing N N 116 DG OP2 HOP2 sing N N 117 DG "O5'" "C5'" sing N N 118 DG "C5'" "C4'" sing N N 119 DG "C5'" "H5'" sing N N 120 DG "C5'" "H5''" sing N N 121 DG "C4'" "O4'" sing N N 122 DG "C4'" "C3'" sing N N 123 DG "C4'" "H4'" sing N N 124 DG "O4'" "C1'" sing N N 125 DG "C3'" "O3'" sing N N 126 DG "C3'" "C2'" sing N N 127 DG "C3'" "H3'" sing N N 128 DG "O3'" "HO3'" sing N N 129 DG "C2'" "C1'" sing N N 130 DG "C2'" "H2'" sing N N 131 DG "C2'" "H2''" sing N N 132 DG "C1'" N9 sing N N 133 DG "C1'" "H1'" sing N N 134 DG N9 C8 sing Y N 135 DG N9 C4 sing Y N 136 DG C8 N7 doub Y N 137 DG C8 H8 sing N N 138 DG N7 C5 sing Y N 139 DG C5 C6 sing N N 140 DG C5 C4 doub Y N 141 DG C6 O6 doub N N 142 DG C6 N1 sing N N 143 DG N1 C2 sing N N 144 DG N1 H1 sing N N 145 DG C2 N2 sing N N 146 DG C2 N3 doub N N 147 DG N2 H21 sing N N 148 DG N2 H22 sing N N 149 DG N3 C4 sing N N 150 DT OP3 P sing N N 151 DT OP3 HOP3 sing N N 152 DT P OP1 doub N N 153 DT P OP2 sing N N 154 DT P "O5'" sing N N 155 DT OP2 HOP2 sing N N 156 DT "O5'" "C5'" sing N N 157 DT "C5'" "C4'" sing N N 158 DT "C5'" "H5'" sing N N 159 DT "C5'" "H5''" sing N N 160 DT "C4'" "O4'" sing N N 161 DT "C4'" "C3'" sing N N 162 DT "C4'" "H4'" sing N N 163 DT "O4'" "C1'" sing N N 164 DT "C3'" "O3'" sing N N 165 DT "C3'" "C2'" sing N N 166 DT "C3'" "H3'" sing N N 167 DT "O3'" "HO3'" sing N N 168 DT "C2'" "C1'" sing N N 169 DT "C2'" "H2'" sing N N 170 DT "C2'" "H2''" sing N N 171 DT "C1'" N1 sing N N 172 DT "C1'" "H1'" sing N N 173 DT N1 C2 sing N N 174 DT N1 C6 sing N N 175 DT C2 O2 doub N N 176 DT C2 N3 sing N N 177 DT N3 C4 sing N N 178 DT N3 H3 sing N N 179 DT C4 O4 doub N N 180 DT C4 C5 sing N N 181 DT C5 C7 sing N N 182 DT C5 C6 doub N N 183 DT C7 H71 sing N N 184 DT C7 H72 sing N N 185 DT C7 H73 sing N N 186 DT C6 H6 sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 # _ndb_struct_conf_na.entry_id 1D30 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.046 -0.096 -0.153 6.150 -12.814 0.316 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.346 -0.168 0.307 2.126 -20.075 -2.226 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.054 -0.213 -0.175 -3.141 -14.431 -5.884 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.055 -0.391 0.035 8.717 -12.580 -8.995 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 -0.102 -0.004 -0.257 -0.510 -15.040 1.733 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.086 -0.027 0.661 8.983 -22.142 -4.366 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.041 -0.152 0.175 -3.842 -23.837 6.146 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.124 -0.505 0.097 -6.864 -23.138 -2.771 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.148 -0.353 -0.022 -10.111 -12.539 2.144 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.100 -0.199 0.038 8.738 -6.153 -1.228 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.098 -0.460 0.173 1.173 -16.315 -4.409 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.059 -0.433 -0.594 -3.065 5.579 -4.381 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.192 0.289 3.546 -4.983 6.951 36.954 -0.531 -0.405 3.536 10.790 7.734 37.897 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.194 0.421 3.465 5.857 -3.553 40.511 1.009 0.397 3.412 -5.087 -8.386 41.062 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.189 0.629 3.313 -1.635 3.902 30.451 0.401 0.029 3.371 7.384 3.093 30.736 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.383 -0.118 3.510 1.331 7.483 33.514 -1.456 -0.425 3.417 12.773 -2.272 34.341 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.170 -0.357 3.002 -7.794 -1.336 35.288 -0.401 -0.745 2.982 -2.170 12.661 36.135 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.450 -0.840 3.604 5.797 1.490 36.284 -1.556 0.161 3.595 2.372 -9.231 36.758 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.658 -0.199 3.357 -1.332 3.209 35.156 -0.816 0.883 3.348 5.297 2.199 35.322 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.027 0.211 3.452 -0.549 -5.626 41.525 0.913 -0.023 3.397 -7.890 0.770 41.891 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.305 0.943 3.117 0.110 1.827 24.542 1.671 -0.682 3.179 4.291 -0.259 24.609 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.864 0.618 3.648 -2.283 -6.105 42.052 1.538 0.935 3.569 -8.446 3.159 42.531 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 0.580 1.045 3.715 7.217 -3.128 38.548 1.977 0.115 3.668 -4.678 -10.794 39.312 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1D30 _atom_sites.fract_transf_matrix[1][1] 0.039448 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024564 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015031 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_