data_1D36 # _entry.id 1D36 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D36 pdb_00001d36 10.2210/pdb1d36/pdb RCSB DDF026 ? ? WWPDB D_1000172640 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.pdbx_synonyms' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D36 _pdbx_database_status.recvd_initial_deposition_date 1991-04-23 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.-G.' 1 'Liaw, Y.-C.' 2 'Li, Y.-K.' 3 'Van Der Marel, G.A.' 4 'Van Boom, J.H.' 5 'Wang, A.H.-J.' 6 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Facile formation of a crosslinked adduct between DNA and the daunorubicin derivative MAR70 mediated by formaldehyde: molecular structure of the MAR70-d(CGTnACG) covalent adduct. ; Proc.Natl.Acad.Sci.USA 88 4845 4849 1991 PNASA6 US 0027-8424 0040 ? 2052564 10.1073/pnas.88.11.4845 1 ;Influence of Aglycone Modifications on the Binding of Anthracycline Drugs to DNA: The Molecular Structure of Idarubicin and 4-O-Demethyl-11- Deoxydoxorubicin Complexed to d(CGATCG) ; 'Anti-Cancer Drug Des.' 6 137 ? 1991 ACDDEA UK 0266-9536 0807 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Liaw, Y.C.' 2 ? primary 'Li, Y.K.' 3 ? primary 'van der Marel, G.A.' 4 ? primary 'van Boom, J.H.' 5 ? primary 'Wang, A.H.' 6 ? 1 'Gao, Y.-G.' 7 ? 1 'Wang, A.H.-J.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') ; 1809.217 1 ? ? ? ? 2 non-polymer syn "4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN" 657.662 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 68 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DT)(DA)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN" MAR 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MAR non-polymer . "4'-EPI-4'-(2-DEOXYFUCOSE)DAUNOMYCIN" 'MAR70; DAUNOMYCIN DERIVATIVE' 'C33 H39 N O13' 657.662 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MAR 1 7 7 MAR MAR A . C 3 MG 1 8 8 MG MG A . D 4 HOH 1 9 9 HOH HOH A . D 4 HOH 2 10 10 HOH HOH A . D 4 HOH 3 11 11 HOH HOH A . D 4 HOH 4 12 12 HOH HOH A . D 4 HOH 5 13 13 HOH HOH A . D 4 HOH 6 14 14 HOH HOH A . D 4 HOH 7 15 15 HOH HOH A . D 4 HOH 8 16 16 HOH HOH A . D 4 HOH 9 17 17 HOH HOH A . D 4 HOH 10 18 18 HOH HOH A . D 4 HOH 11 19 19 HOH HOH A . D 4 HOH 12 20 20 HOH HOH A . D 4 HOH 13 21 21 HOH HOH A . D 4 HOH 14 22 22 HOH HOH A . D 4 HOH 15 23 23 HOH HOH A . D 4 HOH 16 24 24 HOH HOH A . D 4 HOH 17 25 25 HOH HOH A . D 4 HOH 18 26 26 HOH HOH A . D 4 HOH 19 27 27 HOH HOH A . D 4 HOH 20 28 28 HOH HOH A . D 4 HOH 21 29 29 HOH HOH A . D 4 HOH 22 30 30 HOH HOH A . D 4 HOH 23 31 31 HOH HOH A . D 4 HOH 24 32 32 HOH HOH A . D 4 HOH 25 33 33 HOH HOH A . D 4 HOH 26 34 34 HOH HOH A . D 4 HOH 27 35 35 HOH HOH A . D 4 HOH 28 36 36 HOH HOH A . D 4 HOH 29 37 37 HOH HOH A . D 4 HOH 30 38 38 HOH HOH A . D 4 HOH 31 39 39 HOH HOH A . D 4 HOH 32 40 40 HOH HOH A . D 4 HOH 33 41 41 HOH HOH A . D 4 HOH 34 42 42 HOH HOH A . D 4 HOH 35 43 43 HOH HOH A . D 4 HOH 36 44 44 HOH HOH A . D 4 HOH 37 45 45 HOH HOH A . D 4 HOH 38 46 46 HOH HOH A . D 4 HOH 39 47 47 HOH HOH A . D 4 HOH 40 48 48 HOH HOH A . D 4 HOH 41 49 49 HOH HOH A . D 4 HOH 42 50 50 HOH HOH A . D 4 HOH 43 51 51 HOH HOH A . D 4 HOH 44 52 52 HOH HOH A . D 4 HOH 45 53 53 HOH HOH A . D 4 HOH 46 54 54 HOH HOH A . D 4 HOH 47 55 55 HOH HOH A . D 4 HOH 48 56 56 HOH HOH A . D 4 HOH 49 57 57 HOH HOH A . D 4 HOH 50 58 58 HOH HOH A . D 4 HOH 51 59 59 HOH HOH A . D 4 HOH 52 60 60 HOH HOH A . D 4 HOH 53 61 61 HOH HOH A . D 4 HOH 54 62 62 HOH HOH A . D 4 HOH 55 63 63 HOH HOH A . D 4 HOH 56 64 64 HOH HOH A . D 4 HOH 57 65 65 HOH HOH A . D 4 HOH 58 66 66 HOH HOH A . D 4 HOH 59 67 67 HOH HOH A . D 4 HOH 60 68 68 HOH HOH A . D 4 HOH 61 69 69 HOH HOH A . D 4 HOH 62 70 70 HOH HOH A . D 4 HOH 63 71 71 HOH HOH A . D 4 HOH 64 72 72 HOH HOH A . D 4 HOH 65 73 73 HOH HOH A . D 4 HOH 66 74 74 HOH HOH A . D 4 HOH 67 75 75 HOH HOH A . D 4 HOH 68 76 76 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D36 _cell.length_a 28.010 _cell.length_b 28.010 _cell.length_c 53.110 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D36 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1D36 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.88 _exptl_crystal.density_percent_sol 57.27 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D36 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.500 _reflns.number_obs 2168 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D36 _refine.ls_number_reflns_obs 2168 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1640000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 236 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.164 ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D36 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D36 _struct.title ;FACILE FORMATION OF A CROSSLINKED ADDUCT BETWEEN DNA AND THE DAUNORUBICIN DERIVATIVE MAR70 MEDIATED BY FORMALDEHYDE: MOLECULAR STRUCTURE OF THE MAR70-D(CGTNACG) COVALENT ADDUC ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D36 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D36 _struct_ref.pdbx_db_accession 1D36 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D36 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1D36 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.0100000000 -1.0000000000 0.0000000000 0.0000000000 28.0100000000 0.0000000000 0.0000000000 -1.0000000000 26.5550000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 6 N7 ? ? ? 1_555 C MG . MG ? ? A DG 6 A MG 8 1_555 ? ? ? ? ? ? ? 2.764 ? ? metalc2 metalc ? ? B MAR . O6 ? ? ? 1_555 C MG . MG ? ? A MAR 7 A MG 8 1_555 ? ? ? ? ? ? ? 3.090 ? ? metalc3 metalc ? ? B MAR . O4 ? ? ? 1_555 C MG . MG ? ? A MAR 7 A MG 8 1_555 ? ? ? ? ? ? ? 2.976 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8 A HOH 9 1_555 ? ? ? ? ? ? ? 3.072 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8 A HOH 10 1_555 ? ? ? ? ? ? ? 2.961 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 8 A HOH 11 1_555 ? ? ? ? ? ? ? 2.852 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 3 A DA 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 4 N6 ? ? A DT 3 A DA 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 4 A DT 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 4 A DT 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O6 ? B MAR . ? A MAR 7 ? 1_555 74.0 ? 2 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O4 ? B MAR . ? A MAR 7 ? 1_555 123.2 ? 3 O6 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O4 ? B MAR . ? A MAR 7 ? 1_555 50.5 ? 4 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 9 ? 1_555 95.1 ? 5 O6 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 9 ? 1_555 95.6 ? 6 O4 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 9 ? 1_555 81.0 ? 7 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 100.6 ? 8 O6 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 109.8 ? 9 O4 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 107.8 ? 10 O ? D HOH . ? A HOH 9 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 10 ? 1_555 152.9 ? 11 N7 ? A DG 6 ? A DG 6 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 125.8 ? 12 O6 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 155.0 ? 13 O4 ? B MAR . ? A MAR 7 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 105.9 ? 14 O ? D HOH . ? A HOH 9 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 69.7 ? 15 O ? D HOH . ? A HOH 10 ? 1_555 MG ? C MG . ? A MG 8 ? 1_555 O ? D HOH . ? A HOH 11 ? 1_555 83.2 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MAR 7 ? 13 'BINDING SITE FOR RESIDUE MAR A 7' AC2 Software A MG 8 ? 5 'BINDING SITE FOR RESIDUE MG A 8' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 DC A 1 ? DC A 1 . ? 8_665 ? 2 AC1 13 DG A 2 ? DG A 2 . ? 8_665 ? 3 AC1 13 DT A 3 ? DT A 3 . ? 8_665 ? 4 AC1 13 DA A 4 ? DA A 4 . ? 1_555 ? 5 AC1 13 DA A 4 ? DA A 4 . ? 8_665 ? 6 AC1 13 DC A 5 ? DC A 5 . ? 1_555 ? 7 AC1 13 DG A 6 ? DG A 6 . ? 1_555 ? 8 AC1 13 MG C . ? MG A 8 . ? 1_555 ? 9 AC1 13 HOH D . ? HOH A 17 . ? 1_555 ? 10 AC1 13 HOH D . ? HOH A 30 . ? 1_555 ? 11 AC1 13 HOH D . ? HOH A 41 . ? 1_555 ? 12 AC1 13 HOH D . ? HOH A 62 . ? 1_555 ? 13 AC1 13 HOH D . ? HOH A 71 . ? 1_555 ? 14 AC2 5 DG A 6 ? DG A 6 . ? 1_555 ? 15 AC2 5 MAR B . ? MAR A 7 . ? 1_555 ? 16 AC2 5 HOH D . ? HOH A 9 . ? 1_555 ? 17 AC2 5 HOH D . ? HOH A 10 . ? 1_555 ? 18 AC2 5 HOH D . ? HOH A 11 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A DC 5 ? ? O A HOH 38 ? ? 1.91 2 1 O A HOH 15 ? ? O A HOH 38 ? ? 1.91 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.701 1.593 0.108 0.010 N 2 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.349 1.391 -0.042 0.007 N 3 1 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? 1.385 1.446 -0.061 0.010 N 4 1 "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? 1.463 1.516 -0.053 0.008 N 5 1 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.378 1.446 -0.068 0.010 N 6 1 C2 A DA 4 ? ? N3 A DA 4 ? ? 1.389 1.331 0.058 0.009 N 7 1 N7 A DA 4 ? ? C8 A DA 4 ? ? 1.256 1.311 -0.055 0.007 N 8 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.670 1.593 0.077 0.010 N 9 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.690 1.593 0.097 0.010 N 10 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? 1.494 1.420 0.074 0.011 N 11 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.333 1.391 -0.058 0.007 N 12 1 C8 A DG 6 ? ? N9 A DG 6 ? ? 1.318 1.374 -0.056 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.26 108.30 2.96 0.30 N 2 1 C6 A DC 1 ? ? N1 A DC 1 ? ? C2 A DC 1 ? ? 117.38 120.30 -2.92 0.40 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 117.25 121.90 -4.65 0.40 N 4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.82 118.00 4.82 0.70 N 5 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 139.40 119.70 19.70 1.20 Y 6 1 "O3'" A DC 1 ? ? P A DG 2 ? ? "O5'" A DG 2 ? ? 90.97 104.00 -13.03 1.90 Y 7 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.47 102.40 -4.93 0.80 N 8 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 118.45 108.30 10.15 0.30 N 9 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DT 3 ? ? 127.13 119.70 7.43 1.20 Y 10 1 N1 A DT 3 ? ? C2 A DT 3 ? ? N3 A DT 3 ? ? 120.13 114.60 5.53 0.60 N 11 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 120.66 127.20 -6.54 0.60 N 12 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 119.49 115.20 4.29 0.60 N 13 1 N1 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 117.93 123.10 -5.17 0.80 N 14 1 N3 A DT 3 ? ? C4 A DT 3 ? ? O4 A DT 3 ? ? 113.62 119.90 -6.28 0.60 N 15 1 OP1 A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 148.84 119.60 29.24 1.50 N 16 1 "O5'" A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 95.15 105.70 -10.55 0.90 N 17 1 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? "O4'" A DA 4 ? ? 117.59 109.80 7.79 1.10 N 18 1 C6 A DA 4 ? ? N1 A DA 4 ? ? C2 A DA 4 ? ? 123.98 118.60 5.38 0.60 N 19 1 C5 A DA 4 ? ? C6 A DA 4 ? ? N1 A DA 4 ? ? 114.04 117.70 -3.66 0.50 N 20 1 "C3'" A DA 4 ? ? "O3'" A DA 4 ? ? P A DC 5 ? ? 129.57 119.70 9.87 1.20 Y 21 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 116.51 108.30 8.21 0.30 N 22 1 "O3'" A DC 5 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 90.96 105.20 -14.24 2.20 Y 23 1 "O3'" A DC 5 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 119.56 110.50 9.06 1.10 Y 24 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 101.90 108.00 -6.10 0.70 N 25 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.94 111.50 4.44 0.50 N 26 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 121.97 128.60 -6.63 0.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MAR C1 C Y N 147 MAR C2 C Y N 148 MAR C3 C Y N 149 MAR C4 C Y N 150 MAR O4 O N N 151 MAR C5 C Y N 152 MAR C6 C N N 153 MAR O6 O N N 154 MAR C7 C Y N 155 MAR C8 C Y N 156 MAR O8 O N N 157 MAR C9 C Y N 158 MAR C10 C N S 159 MAR O10 O N N 160 MAR C11 C N N 161 MAR C12 C N S 162 MAR O12 O N N 163 MAR C13 C N N 164 MAR O13 O N N 165 MAR C14 C N N 166 MAR C15 C N N 167 MAR C16 C Y N 168 MAR C17 C Y N 169 MAR O17 O N N 170 MAR C18 C Y N 171 MAR C19 C N N 172 MAR O19 O N N 173 MAR C20 C Y N 174 MAR C21 C N N 175 MAR "C1'" C N R 176 MAR "C2'" C N N 177 MAR "C3'" C N S 178 MAR "N3'" N N N 179 MAR "C4'" C N S 180 MAR "O4'" O N N 181 MAR "C5'" C N S 182 MAR "O5'" O N N 183 MAR "C6'" C N N 184 MAR CB1 C N S 185 MAR CB2 C N N 186 MAR CB3 C N S 187 MAR OB3 O N N 188 MAR CB4 C N R 189 MAR OB4 O N N 190 MAR CB5 C N S 191 MAR OB5 O N N 192 MAR CB6 C N N 193 MAR H1 H N N 194 MAR H2 H N N 195 MAR H3 H N N 196 MAR HO8 H N N 197 MAR H10 H N N 198 MAR H111 H N N 199 MAR H112 H N N 200 MAR HO12 H N N 201 MAR H141 H N N 202 MAR H142 H N N 203 MAR H143 H N N 204 MAR H151 H N N 205 MAR H152 H N N 206 MAR HO17 H N N 207 MAR H211 H N N 208 MAR H212 H N N 209 MAR H213 H N N 210 MAR "H1'" H N N 211 MAR "H2'1" H N N 212 MAR "H2'2" H N N 213 MAR "H3'" H N N 214 MAR "HN'1" H N N 215 MAR "HN'2" H N N 216 MAR "H4'" H N N 217 MAR "H5'" H N N 218 MAR "H6'1" H N N 219 MAR "H6'2" H N N 220 MAR "H6'3" H N N 221 MAR HB1 H N N 222 MAR HB21 H N N 223 MAR HB22 H N N 224 MAR HB3 H N N 225 MAR HOB3 H N N 226 MAR HB4 H N N 227 MAR HOB4 H N N 228 MAR HB5 H N N 229 MAR HB61 H N N 230 MAR HB62 H N N 231 MAR HB63 H N N 232 MG MG MG N N 233 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 MAR C1 C2 doub Y N 152 MAR C1 C20 sing Y N 153 MAR C1 H1 sing N N 154 MAR C2 C3 sing Y N 155 MAR C2 H2 sing N N 156 MAR C3 C4 doub Y N 157 MAR C3 H3 sing N N 158 MAR C4 O4 sing N N 159 MAR C4 C5 sing Y N 160 MAR O4 C21 sing N N 161 MAR C5 C6 sing N N 162 MAR C5 C20 doub Y N 163 MAR C6 O6 doub N N 164 MAR C6 C7 sing N N 165 MAR C7 C8 doub Y N 166 MAR C7 C18 sing Y N 167 MAR C8 O8 sing N N 168 MAR C8 C9 sing Y N 169 MAR O8 HO8 sing N N 170 MAR C9 C10 sing N N 171 MAR C9 C16 doub Y N 172 MAR C10 O10 sing N N 173 MAR C10 C11 sing N N 174 MAR C10 H10 sing N N 175 MAR O10 "C1'" sing N N 176 MAR C11 C12 sing N N 177 MAR C11 H111 sing N N 178 MAR C11 H112 sing N N 179 MAR C12 O12 sing N N 180 MAR C12 C13 sing N N 181 MAR C12 C15 sing N N 182 MAR O12 HO12 sing N N 183 MAR C13 O13 doub N N 184 MAR C13 C14 sing N N 185 MAR C14 H141 sing N N 186 MAR C14 H142 sing N N 187 MAR C14 H143 sing N N 188 MAR C15 C16 sing N N 189 MAR C15 H151 sing N N 190 MAR C15 H152 sing N N 191 MAR C16 C17 sing Y N 192 MAR C17 O17 sing N N 193 MAR C17 C18 doub Y N 194 MAR O17 HO17 sing N N 195 MAR C18 C19 sing N N 196 MAR C19 O19 doub N N 197 MAR C19 C20 sing N N 198 MAR C21 H211 sing N N 199 MAR C21 H212 sing N N 200 MAR C21 H213 sing N N 201 MAR "C1'" "C2'" sing N N 202 MAR "C1'" "O5'" sing N N 203 MAR "C1'" "H1'" sing N N 204 MAR "C2'" "C3'" sing N N 205 MAR "C2'" "H2'1" sing N N 206 MAR "C2'" "H2'2" sing N N 207 MAR "C3'" "N3'" sing N N 208 MAR "C3'" "C4'" sing N N 209 MAR "C3'" "H3'" sing N N 210 MAR "N3'" "HN'1" sing N N 211 MAR "N3'" "HN'2" sing N N 212 MAR "C4'" "O4'" sing N N 213 MAR "C4'" "C5'" sing N N 214 MAR "C4'" "H4'" sing N N 215 MAR "O4'" CB1 sing N N 216 MAR "C5'" "O5'" sing N N 217 MAR "C5'" "C6'" sing N N 218 MAR "C5'" "H5'" sing N N 219 MAR "C6'" "H6'1" sing N N 220 MAR "C6'" "H6'2" sing N N 221 MAR "C6'" "H6'3" sing N N 222 MAR CB1 CB2 sing N N 223 MAR CB1 OB5 sing N N 224 MAR CB1 HB1 sing N N 225 MAR CB2 CB3 sing N N 226 MAR CB2 HB21 sing N N 227 MAR CB2 HB22 sing N N 228 MAR CB3 OB3 sing N N 229 MAR CB3 CB4 sing N N 230 MAR CB3 HB3 sing N N 231 MAR OB3 HOB3 sing N N 232 MAR CB4 OB4 sing N N 233 MAR CB4 CB5 sing N N 234 MAR CB4 HB4 sing N N 235 MAR OB4 HOB4 sing N N 236 MAR CB5 OB5 sing N N 237 MAR CB5 CB6 sing N N 238 MAR CB5 HB5 sing N N 239 MAR CB6 HB61 sing N N 240 MAR CB6 HB62 sing N N 241 MAR CB6 HB63 sing N N 242 # _ndb_struct_conf_na.entry_id 1D36 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 8_665 0.149 -0.239 -0.027 5.560 0.309 -2.495 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 8_665 -0.129 -0.183 -0.312 -16.978 2.730 0.273 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DT 3 1_555 A DA 4 8_665 -0.175 -0.210 0.041 -4.954 -5.121 3.579 3 A_DT3:DA4_A A 3 ? A 4 ? 20 1 1 A DA 4 1_555 A DT 3 8_665 0.175 -0.210 0.041 4.954 -5.121 3.579 4 A_DA4:DT3_A A 4 ? A 3 ? 20 1 1 A DC 5 1_555 A DG 2 8_665 0.129 -0.183 -0.312 16.978 2.730 0.273 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 8_665 -0.149 -0.239 -0.027 -5.560 0.309 -2.495 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.151 1.237 7.056 1.235 -2.484 35.992 2.752 -1.481 6.993 -4.012 -1.995 36.095 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_665 A DT 3 1_555 A DA 4 8_665 -0.950 0.007 3.150 -2.759 -2.658 28.102 0.614 1.318 3.212 -5.441 5.648 28.357 2 AA_DG2DT3:DA4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DT 3 1_555 A DA 4 8_665 A DA 4 1_555 A DT 3 8_665 0.000 0.225 3.214 0.000 9.121 37.978 -0.754 0.000 3.182 13.773 0.000 39.018 3 AA_DT3DA4:DT3DA4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DA 4 1_555 A DT 3 8_665 A DC 5 1_555 A DG 2 8_665 0.950 0.007 3.150 2.759 -2.658 28.102 0.614 -1.318 3.212 -5.441 -5.648 28.357 4 AA_DA4DC5:DG2DT3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.151 1.237 7.056 -1.235 -2.484 35.992 2.752 1.481 6.993 -4.012 1.995 36.095 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 1D36 _atom_sites.fract_transf_matrix[1][1] 0.035702 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035702 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018829 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_