data_1D3Q # _entry.id 1D3Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D3Q pdb_00001d3q 10.2210/pdb1d3q/pdb RCSB RCSB009765 ? ? WWPDB D_1000009765 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-10-04 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2024-10-09 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Advisory 9 4 'Structure model' 'Data collection' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' 'Structure summary' 12 5 'Structure model' Advisory 13 5 'Structure model' 'Data collection' 14 5 'Structure model' 'Database references' 15 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' chem_comp_atom 12 5 'Structure model' chem_comp_bond 13 5 'Structure model' database_2 14 5 'Structure model' pdbx_entry_details 15 5 'Structure model' pdbx_modification_feature 16 5 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 15 4 'Structure model' '_pdbx_struct_conn_angle.value' 16 4 'Structure model' '_struct_conn.conn_type_id' 17 4 'Structure model' '_struct_conn.id' 18 4 'Structure model' '_struct_conn.pdbx_dist_value' 19 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 20 4 'Structure model' '_struct_conn.pdbx_role' 21 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_symmetry' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_symmetry' 37 5 'Structure model' '_chem_comp.pdbx_synonyms' 38 5 'Structure model' '_database_2.pdbx_DOI' 39 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D3Q _pdbx_database_status.recvd_initial_deposition_date 1999-09-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1D3D ;CRYSTAL STRUCTURE OF HUMAN APLHA-THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 4 ; unspecified PDB 1D3P ;CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 3 ; unspecified PDB 1D3T ;CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 1 ; unspecified PDB 1D4P ;CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH 5-AMIDINOINDOLE-4- BENZYLPIPERIDINE INHIBITOR ; unspecified # _audit_author.name 'Chirgadze, N.Y.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;The crystal structures of human alpha-thrombin complexed with active site-directed diamino benzo[b]thiophene derivatives: a binding mode for a structurally novel class of inhibitors. ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 9 _citation.page_first 29 _citation.page_last 36 _citation.year 2000 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10739244 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chirgadze, N.Y.' 1 ? primary 'Sall, D.J.' 2 ? primary 'Briggs, S.L.' 3 ? primary 'Clawson, D.K.' 4 ? primary 'Zhang, M.' 5 ? primary 'Smith, G.F.' 6 ? primary 'Schevitz, R.W.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ALPHA-THROMBIN 4096.534 1 3.4.21.5 ? ? ? 2 polymer man ALPHA-THROMBIN 29780.219 1 3.4.21.5 ? ? ? 3 polymer nat HIRUGEN 1548.580 1 ? ? ? ? 4 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 5 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 6 non-polymer syn '3-[4-(2-PYRROLIDIN-1-YL-ETHOXY)-BENZYL]-2-4-(2-PYRROLIDIN-1-YL-ETHOXY)-PHENYL] -BENZO[B]THIOPHENE' 526.732 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR A ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; B ? 3 'polypeptide(L)' no yes 'GDFEEIPEE(TYS)LQ' GDFEEIPEEYLQ H ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 5 'SODIUM ION' NA 6 '3-[4-(2-PYRROLIDIN-1-YL-ETHOXY)-BENZYL]-2-4-(2-PYRROLIDIN-1-YL-ETHOXY)-PHENYL] -BENZO[B]THIOPHENE' BT2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 GLY n 3 2 ASP n 3 3 PHE n 3 4 GLU n 3 5 GLU n 3 6 ILE n 3 7 PRO n 3 8 GLU n 3 9 GLU n 3 10 TYS n 3 11 LEU n 3 12 GLN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo ? ? ? BLOOD ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? human Homo ? ? ? BLOOD ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _entity_src_nat.entity_id 3 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'medicinal leech' _entity_src_nat.pdbx_organism_scientific 'Hirudo medicinalis' _entity_src_nat.pdbx_ncbi_taxonomy_id 6421 _entity_src_nat.genus Hirudo _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BT2 non-polymer . '3-[4-(2-PYRROLIDIN-1-YL-ETHOXY)-BENZYL]-2-4-(2-PYRROLIDIN-1-YL-ETHOXY)-PHENYL] -BENZO[B]THIOPHENE' ? 'C33 H38 N2 O2 S' 526.732 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 TYS 'L-peptide linking' n O-SULFO-L-TYROSINE ? 'C9 H11 N O6 S' 261.252 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 ? ? ? A . n A 1 2 PHE 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 SER 4 4 ? ? ? A . n A 1 5 GLY 5 5 ? ? ? A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 ASP 34 34 ? ? ? A . n A 1 35 GLY 35 35 ? ? ? A . n A 1 36 ARG 36 36 ? ? ? A . n B 2 1 ILE 1 37 37 ILE ILE B . n B 2 2 VAL 2 38 38 VAL VAL B . n B 2 3 GLU 3 39 39 GLU GLU B . n B 2 4 GLY 4 40 40 GLY GLY B . n B 2 5 SER 5 41 41 SER SER B . n B 2 6 ASP 6 42 42 ASP ASP B . n B 2 7 ALA 7 43 43 ALA ALA B . n B 2 8 GLU 8 44 44 GLU GLU B . n B 2 9 ILE 9 45 45 ILE ILE B . n B 2 10 GLY 10 46 46 GLY GLY B . n B 2 11 MET 11 47 47 MET MET B . n B 2 12 SER 12 48 48 SER SER B . n B 2 13 PRO 13 49 49 PRO PRO B . n B 2 14 TRP 14 50 50 TRP TRP B . n B 2 15 GLN 15 51 51 GLN GLN B . n B 2 16 VAL 16 52 52 VAL VAL B . n B 2 17 MET 17 53 53 MET MET B . n B 2 18 LEU 18 54 54 LEU LEU B . n B 2 19 PHE 19 55 55 PHE PHE B . n B 2 20 ARG 20 56 56 ARG ARG B . n B 2 21 LYS 21 57 57 LYS LYS B . n B 2 22 SER 22 58 58 SER SER B . n B 2 23 PRO 23 59 59 PRO PRO B . n B 2 24 GLN 24 60 60 GLN GLN B . n B 2 25 GLU 25 61 61 GLU GLU B . n B 2 26 LEU 26 62 62 LEU LEU B . n B 2 27 LEU 27 63 63 LEU LEU B . n B 2 28 CYS 28 64 64 CYS CYS B . n B 2 29 GLY 29 65 65 GLY GLY B . n B 2 30 ALA 30 66 66 ALA ALA B . n B 2 31 SER 31 67 67 SER SER B . n B 2 32 LEU 32 68 68 LEU LEU B . n B 2 33 ILE 33 69 69 ILE ILE B . n B 2 34 SER 34 70 70 SER SER B . n B 2 35 ASP 35 71 71 ASP ASP B . n B 2 36 ARG 36 72 72 ARG ARG B . n B 2 37 TRP 37 73 73 TRP TRP B . n B 2 38 VAL 38 74 74 VAL VAL B . n B 2 39 LEU 39 75 75 LEU LEU B . n B 2 40 THR 40 76 76 THR THR B . n B 2 41 ALA 41 77 77 ALA ALA B . n B 2 42 ALA 42 78 78 ALA ALA B . n B 2 43 HIS 43 79 79 HIS HIS B . n B 2 44 CYS 44 80 80 CYS CYS B . n B 2 45 LEU 45 81 81 LEU LEU B . n B 2 46 LEU 46 82 82 LEU LEU B . n B 2 47 TYR 47 83 83 TYR TYR B . n B 2 48 PRO 48 84 84 PRO PRO B . n B 2 49 PRO 49 85 85 PRO PRO B . n B 2 50 TRP 50 86 86 TRP TRP B . n B 2 51 ASP 51 87 87 ASP ASP B . n B 2 52 LYS 52 88 88 LYS LYS B . n B 2 53 ASN 53 89 89 ASN ASN B . n B 2 54 PHE 54 90 90 PHE PHE B . n B 2 55 THR 55 91 91 THR THR B . n B 2 56 GLU 56 92 92 GLU GLU B . n B 2 57 ASN 57 93 93 ASN ASN B . n B 2 58 ASP 58 94 94 ASP ASP B . n B 2 59 LEU 59 95 95 LEU LEU B . n B 2 60 LEU 60 96 96 LEU LEU B . n B 2 61 VAL 61 97 97 VAL VAL B . n B 2 62 ARG 62 98 98 ARG ARG B . n B 2 63 ILE 63 99 99 ILE ILE B . n B 2 64 GLY 64 100 100 GLY GLY B . n B 2 65 LYS 65 101 101 LYS LYS B . n B 2 66 HIS 66 102 102 HIS HIS B . n B 2 67 SER 67 103 103 SER SER B . n B 2 68 ARG 68 104 104 ARG ARG B . n B 2 69 THR 69 105 105 THR THR B . n B 2 70 ARG 70 106 106 ARG ARG B . n B 2 71 TYR 71 107 107 TYR TYR B . n B 2 72 GLU 72 108 108 GLU GLU B . n B 2 73 ARG 73 109 109 ARG ARG B . n B 2 74 ASN 74 110 110 ASN ASN B . n B 2 75 ILE 75 111 111 ILE ILE B . n B 2 76 GLU 76 112 112 GLU GLU B . n B 2 77 LYS 77 113 113 LYS LYS B . n B 2 78 ILE 78 114 114 ILE ILE B . n B 2 79 SER 79 115 115 SER SER B . n B 2 80 MET 80 116 116 MET MET B . n B 2 81 LEU 81 117 117 LEU LEU B . n B 2 82 GLU 82 118 118 GLU GLU B . n B 2 83 LYS 83 119 119 LYS LYS B . n B 2 84 ILE 84 120 120 ILE ILE B . n B 2 85 TYR 85 121 121 TYR TYR B . n B 2 86 ILE 86 122 122 ILE ILE B . n B 2 87 HIS 87 123 123 HIS HIS B . n B 2 88 PRO 88 124 124 PRO PRO B . n B 2 89 ARG 89 125 125 ARG ARG B . n B 2 90 TYR 90 126 126 TYR TYR B . n B 2 91 ASN 91 127 127 ASN ASN B . n B 2 92 TRP 92 128 128 TRP TRP B . n B 2 93 ARG 93 129 129 ARG ARG B . n B 2 94 GLU 94 130 130 GLU GLU B . n B 2 95 ASN 95 131 131 ASN ASN B . n B 2 96 LEU 96 132 132 LEU LEU B . n B 2 97 ASP 97 133 133 ASP ASP B . n B 2 98 ARG 98 134 134 ARG ARG B . n B 2 99 ASP 99 135 135 ASP ASP B . n B 2 100 ILE 100 136 136 ILE ILE B . n B 2 101 ALA 101 137 137 ALA ALA B . n B 2 102 LEU 102 138 138 LEU LEU B . n B 2 103 MET 103 139 139 MET MET B . n B 2 104 LYS 104 140 140 LYS LYS B . n B 2 105 LEU 105 141 141 LEU LEU B . n B 2 106 LYS 106 142 142 LYS LYS B . n B 2 107 LYS 107 143 143 LYS LYS B . n B 2 108 PRO 108 144 144 PRO PRO B . n B 2 109 VAL 109 145 145 VAL VAL B . n B 2 110 ALA 110 146 146 ALA ALA B . n B 2 111 PHE 111 147 147 PHE PHE B . n B 2 112 SER 112 148 148 SER SER B . n B 2 113 ASP 113 149 149 ASP ASP B . n B 2 114 TYR 114 150 150 TYR TYR B . n B 2 115 ILE 115 151 151 ILE ILE B . n B 2 116 HIS 116 152 152 HIS HIS B . n B 2 117 PRO 117 153 153 PRO PRO B . n B 2 118 VAL 118 154 154 VAL VAL B . n B 2 119 CYS 119 155 155 CYS CYS B . n B 2 120 LEU 120 156 156 LEU LEU B . n B 2 121 PRO 121 157 157 PRO PRO B . n B 2 122 ASP 122 158 158 ASP ASP B . n B 2 123 ARG 123 159 159 ARG ARG B . n B 2 124 GLU 124 160 160 GLU GLU B . n B 2 125 THR 125 161 161 THR THR B . n B 2 126 ALA 126 162 162 ALA ALA B . n B 2 127 ALA 127 163 163 ALA ALA B . n B 2 128 SER 128 164 164 SER SER B . n B 2 129 LEU 129 165 165 LEU LEU B . n B 2 130 LEU 130 166 166 LEU LEU B . n B 2 131 GLN 131 167 167 GLN GLN B . n B 2 132 ALA 132 168 168 ALA ALA B . n B 2 133 GLY 133 169 169 GLY GLY B . n B 2 134 TYR 134 170 170 TYR TYR B . n B 2 135 LYS 135 171 171 LYS LYS B . n B 2 136 GLY 136 172 172 GLY GLY B . n B 2 137 ARG 137 173 173 ARG ARG B . n B 2 138 VAL 138 174 174 VAL VAL B . n B 2 139 THR 139 175 175 THR THR B . n B 2 140 GLY 140 176 176 GLY GLY B . n B 2 141 TRP 141 177 177 TRP TRP B . n B 2 142 GLY 142 178 178 GLY GLY B . n B 2 143 ASN 143 179 179 ASN ASN B . n B 2 144 LEU 144 180 180 LEU LEU B . n B 2 145 LYS 145 181 181 LYS LYS B . n B 2 146 GLU 146 182 182 GLU GLU B . n B 2 147 THR 147 183 183 THR THR B . n B 2 148 TRP 148 184 ? ? ? B . n B 2 149 THR 149 185 ? ? ? B . n B 2 150 ALA 150 186 ? ? ? B . n B 2 151 ASN 151 187 ? ? ? B . n B 2 152 VAL 152 188 ? ? ? B . n B 2 153 GLY 153 189 ? ? ? B . n B 2 154 LYS 154 190 ? ? ? B . n B 2 155 GLY 155 191 191 GLY GLY B . n B 2 156 GLN 156 192 192 GLN GLN B . n B 2 157 PRO 157 193 193 PRO PRO B . n B 2 158 SER 158 194 194 SER SER B . n B 2 159 VAL 159 195 195 VAL VAL B . n B 2 160 LEU 160 196 196 LEU LEU B . n B 2 161 GLN 161 197 197 GLN GLN B . n B 2 162 VAL 162 198 198 VAL VAL B . n B 2 163 VAL 163 199 199 VAL VAL B . n B 2 164 ASN 164 200 200 ASN ASN B . n B 2 165 LEU 165 201 201 LEU LEU B . n B 2 166 PRO 166 202 202 PRO PRO B . n B 2 167 ILE 167 203 203 ILE ILE B . n B 2 168 VAL 168 204 204 VAL VAL B . n B 2 169 GLU 169 205 205 GLU GLU B . n B 2 170 ARG 170 206 206 ARG ARG B . n B 2 171 PRO 171 207 207 PRO PRO B . n B 2 172 VAL 172 208 208 VAL VAL B . n B 2 173 CYS 173 209 209 CYS CYS B . n B 2 174 LYS 174 210 210 LYS LYS B . n B 2 175 ASP 175 211 211 ASP ASP B . n B 2 176 SER 176 212 212 SER SER B . n B 2 177 THR 177 213 213 THR THR B . n B 2 178 ARG 178 214 214 ARG ARG B . n B 2 179 ILE 179 215 215 ILE ILE B . n B 2 180 ARG 180 216 216 ARG ARG B . n B 2 181 ILE 181 217 217 ILE ILE B . n B 2 182 THR 182 218 218 THR THR B . n B 2 183 ASP 183 219 219 ASP ASP B . n B 2 184 ASN 184 220 220 ASN ASN B . n B 2 185 MET 185 221 221 MET MET B . n B 2 186 PHE 186 222 222 PHE PHE B . n B 2 187 CYS 187 223 223 CYS CYS B . n B 2 188 ALA 188 224 224 ALA ALA B . n B 2 189 GLY 189 225 225 GLY GLY B . n B 2 190 TYR 190 226 226 TYR TYR B . n B 2 191 LYS 191 227 227 LYS LYS B . n B 2 192 PRO 192 228 228 PRO PRO B . n B 2 193 ASP 193 229 229 ASP ASP B . n B 2 194 GLU 194 230 230 GLU GLU B . n B 2 195 GLY 195 231 231 GLY GLY B . n B 2 196 LYS 196 232 232 LYS LYS B . n B 2 197 ARG 197 233 233 ARG ARG B . n B 2 198 GLY 198 234 234 GLY GLY B . n B 2 199 ASP 199 235 235 ASP ASP B . n B 2 200 ALA 200 236 236 ALA ALA B . n B 2 201 CYS 201 237 237 CYS CYS B . n B 2 202 GLU 202 238 238 GLU GLU B . n B 2 203 GLY 203 239 239 GLY GLY B . n B 2 204 ASP 204 240 240 ASP ASP B . n B 2 205 SER 205 241 241 SER SER B . n B 2 206 GLY 206 242 242 GLY GLY B . n B 2 207 GLY 207 243 243 GLY GLY B . n B 2 208 PRO 208 244 244 PRO PRO B . n B 2 209 PHE 209 245 245 PHE PHE B . n B 2 210 VAL 210 246 246 VAL VAL B . n B 2 211 MET 211 247 247 MET MET B . n B 2 212 LYS 212 248 248 LYS LYS B . n B 2 213 SER 213 249 249 SER SER B . n B 2 214 PRO 214 250 250 PRO PRO B . n B 2 215 PHE 215 251 251 PHE PHE B . n B 2 216 ASN 216 252 252 ASN ASN B . n B 2 217 ASN 217 253 253 ASN ASN B . n B 2 218 ARG 218 254 254 ARG ARG B . n B 2 219 TRP 219 255 255 TRP TRP B . n B 2 220 TYR 220 256 256 TYR TYR B . n B 2 221 GLN 221 257 257 GLN GLN B . n B 2 222 MET 222 258 258 MET MET B . n B 2 223 GLY 223 259 259 GLY GLY B . n B 2 224 ILE 224 260 260 ILE ILE B . n B 2 225 VAL 225 261 261 VAL VAL B . n B 2 226 SER 226 262 262 SER SER B . n B 2 227 TRP 227 263 263 TRP TRP B . n B 2 228 GLY 228 264 264 GLY GLY B . n B 2 229 GLU 229 265 265 GLU GLU B . n B 2 230 GLY 230 266 266 GLY GLY B . n B 2 231 CYS 231 267 267 CYS CYS B . n B 2 232 ASP 232 268 268 ASP ASP B . n B 2 233 ARG 233 269 269 ARG ARG B . n B 2 234 ASP 234 270 270 ASP ASP B . n B 2 235 GLY 235 271 271 GLY GLY B . n B 2 236 LYS 236 272 272 LYS LYS B . n B 2 237 TYR 237 273 273 TYR TYR B . n B 2 238 GLY 238 274 274 GLY GLY B . n B 2 239 PHE 239 275 275 PHE PHE B . n B 2 240 TYR 240 276 276 TYR TYR B . n B 2 241 THR 241 277 277 THR THR B . n B 2 242 HIS 242 278 278 HIS HIS B . n B 2 243 VAL 243 279 279 VAL VAL B . n B 2 244 PHE 244 280 280 PHE PHE B . n B 2 245 ARG 245 281 281 ARG ARG B . n B 2 246 LEU 246 282 282 LEU LEU B . n B 2 247 LYS 247 283 283 LYS LYS B . n B 2 248 LYS 248 284 284 LYS LYS B . n B 2 249 TRP 249 285 285 TRP TRP B . n B 2 250 ILE 250 286 286 ILE ILE B . n B 2 251 GLN 251 287 287 GLN GLN B . n B 2 252 LYS 252 288 288 LYS LYS B . n B 2 253 VAL 253 289 289 VAL VAL B . n B 2 254 ILE 254 290 290 ILE ILE B . n B 2 255 ASP 255 291 291 ASP ASP B . n B 2 256 GLN 256 292 292 GLN GLN B . n B 2 257 PHE 257 293 293 PHE PHE B . n B 2 258 GLY 258 294 ? ? ? B . n B 2 259 GLU 259 295 ? ? ? B . n C 3 1 GLY 1 300 300 GLY GLY H . n C 3 2 ASP 2 301 301 ASP ASP H . n C 3 3 PHE 3 302 302 PHE PHE H . n C 3 4 GLU 4 303 303 GLU GLU H . n C 3 5 GLU 5 304 304 GLU GLU H . n C 3 6 ILE 6 305 305 ILE ILE H . n C 3 7 PRO 7 306 306 PRO PRO H . n C 3 8 GLU 8 307 307 GLU GLU H . n C 3 9 GLU 9 308 308 GLU GLU H . n C 3 10 TYS 10 309 309 TYS TYS H . n C 3 11 LEU 11 310 310 LEU LEU H . n C 3 12 GLN 12 311 311 GLN GLN H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG 1 500 500 NAG NAG B . E 5 NA 1 398 398 NA NA B . F 5 NA 1 399 399 NA NA B . G 6 BT2 1 400 400 BT2 BT2 B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 B LYS 143 ? CD ? B LYS 107 CD 2 1 Y 0 B LYS 143 ? CE ? B LYS 107 CE 3 1 Y 0 B LYS 143 ? NZ ? B LYS 107 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' . ? 3 X-PLOR refinement 98.0 ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1D3Q _cell.length_a 71.150 _cell.length_b 71.730 _cell.length_c 73.100 _cell.angle_alpha 90.00 _cell.angle_beta 100.56 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1D3Q _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1D3Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '30% PEG3400; 100 mM sodium citrate; 200 mM ammonium acetate, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 295.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1996-02-26 _diffrn_detector.details 'YALE/MSC MIRRORS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D3Q _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.900 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.8000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.000 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 99.3 _reflns_shell.Rmerge_I_obs 0.265 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 2.00 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1D3Q _refine.ls_number_reflns_obs 6935 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 2.90 _refine.ls_percent_reflns_obs 85.4 _refine.ls_R_factor_obs 0.167 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.167 _refine.ls_R_factor_R_free 0.228 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.4 _refine.ls_number_reflns_R_free 520 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2364 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2418 _refine_hist.d_res_high 2.90 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.44 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 27.01 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.92 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.90 _refine_ls_shell.d_res_low 3.03 _refine_ls_shell.number_reflns_R_work 652 _refine_ls_shell.R_factor_R_work 0.238 _refine_ls_shell.percent_reflns_obs 86.5 _refine_ls_shell.R_factor_R_free 0.28 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 6.8 _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1D3Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D3Q _struct.title 'CRYSTAL STRUCTURE OF HUMAN ALPHA THROMBIN IN COMPLEX WITH BENZO[B]THIOPHENE INHIBITOR 2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D3Q _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'THROMBIN; BENZO[B]THIOPHENE, BLOOD CLOTTING, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 328 ? ? 2 UNP THRB_HUMAN P00734 2 364 ? ? 3 UNP ITHA_HIRME P28501 3 54 ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D3Q A 1 ? 36 ? P00734 328 ? 363 ? 1 36 2 2 1D3Q B 1 ? 259 ? P00734 364 ? 622 ? 37 295 3 3 1D3Q H 1 ? 12 ? P28501 54 ? 65 ? 300 311 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5090 ? 1 MORE -32 ? 1 'SSA (A^2)' 12970 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 15 ? SER A 19 ? PHE A 15 SER A 19 5 ? 5 HELX_P HELX_P2 2 THR A 24 ? TYR A 32 ? THR A 24 TYR A 32 1 ? 9 HELX_P HELX_P3 3 ALA B 41 ? CYS B 44 ? ALA B 77 CYS B 80 5 ? 4 HELX_P HELX_P4 4 PRO B 48 ? ASP B 51 ? PRO B 84 ASP B 87 5 ? 4 HELX_P HELX_P5 5 THR B 55 ? ASN B 57 ? THR B 91 ASN B 93 5 ? 3 HELX_P HELX_P6 6 ASP B 122 ? LEU B 130 ? ASP B 158 LEU B 166 1 ? 9 HELX_P HELX_P7 7 GLU B 169 ? ASP B 175 ? GLU B 205 ASP B 211 1 ? 7 HELX_P HELX_P8 8 LEU B 246 ? PHE B 257 ? LEU B 282 PHE B 293 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? A CYS 9 B CYS 155 1_555 ? ? ? ? ? ? ? 2.022 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? B CYS 64 B CYS 80 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? B CYS 209 B CYS 223 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? B CYS 237 B CYS 267 1_555 ? ? ? ? ? ? ? 2.029 ? ? covale1 covale one ? B ASN 53 ND2 ? ? ? 1_555 D NAG . C1 ? ? B ASN 89 B NAG 500 1_555 ? ? ? ? ? ? ? 1.463 ? N-Glycosylation covale2 covale both ? C GLU 9 C ? ? ? 1_555 C TYS 10 N ? ? H GLU 308 H TYS 309 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale3 covale both ? C TYS 10 C ? ? ? 1_555 C LEU 11 N ? ? H TYS 309 H LEU 310 1_555 ? ? ? ? ? ? ? 1.350 ? ? metalc1 metalc ? ? B LYS 174 O ? ? ? 1_555 E NA . NA ? ? B LYS 210 B NA 398 1_555 ? ? ? ? ? ? ? 2.680 ? ? metalc2 metalc ? ? B THR 177 O ? ? ? 1_555 E NA . NA ? ? B THR 213 B NA 398 1_555 ? ? ? ? ? ? ? 2.458 ? ? metalc3 metalc ? ? B PHE 215 O ? ? ? 4_446 E NA . NA ? ? B PHE 251 B NA 398 1_555 ? ? ? ? ? ? ? 2.584 ? ? metalc4 metalc ? ? B ARG 233 O ? ? ? 1_555 F NA . NA ? ? B ARG 269 B NA 399 1_555 ? ? ? ? ? ? ? 2.523 ? ? metalc5 metalc ? ? B LYS 236 O ? ? ? 1_555 F NA . NA ? ? B LYS 272 B NA 399 1_555 ? ? ? ? ? ? ? 2.356 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B LYS 174 ? B LYS 210 ? 1_555 NA ? E NA . ? B NA 398 ? 1_555 O ? B THR 177 ? B THR 213 ? 1_555 72.1 ? 2 O ? B LYS 174 ? B LYS 210 ? 1_555 NA ? E NA . ? B NA 398 ? 1_555 O ? B PHE 215 ? B PHE 251 ? 4_446 86.3 ? 3 O ? B THR 177 ? B THR 213 ? 1_555 NA ? E NA . ? B NA 398 ? 1_555 O ? B PHE 215 ? B PHE 251 ? 4_446 87.9 ? 4 O ? B ARG 233 ? B ARG 269 ? 1_555 NA ? F NA . ? B NA 399 ? 1_555 O ? B LYS 236 ? B LYS 272 ? 1_555 91.1 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 TYS C 10 ? . . . . TYS H 309 ? 1_555 . . . . . . . TYR 1 TYS Sulfation 'Named protein modification' 2 NAG D . ? ASN B 53 ? NAG B 500 ? 1_555 ASN B 89 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 9 ? CYS B 119 ? CYS A 9 ? 1_555 CYS B 155 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS B 28 ? CYS B 44 ? CYS B 64 ? 1_555 CYS B 80 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 173 ? CYS B 187 ? CYS B 209 ? 1_555 CYS B 223 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS B 201 ? CYS B 231 ? CYS B 237 ? 1_555 CYS B 267 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 58 _struct_mon_prot_cis.auth_asym_id B _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 59 _struct_mon_prot_cis.pdbx_auth_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.17 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 5 ? ASP B 6 ? SER B 41 ASP B 42 A 2 GLN B 161 ? PRO B 166 ? GLN B 197 PRO B 202 A 3 LYS B 135 ? GLY B 140 ? LYS B 171 GLY B 176 A 4 PRO B 208 ? LYS B 212 ? PRO B 244 LYS B 248 A 5 TRP B 219 ? TRP B 227 ? TRP B 255 TRP B 263 A 6 GLY B 238 ? HIS B 242 ? GLY B 274 HIS B 278 A 7 MET B 185 ? ALA B 188 ? MET B 221 ALA B 224 B 1 GLN B 15 ? ARG B 20 ? GLN B 51 ARG B 56 B 2 GLU B 25 ? LEU B 32 ? GLU B 61 LEU B 68 B 3 GLN B 15 ? ARG B 20 ? GLN B 51 ARG B 56 B 4 LEU B 59 ? ILE B 63 ? LEU B 95 ILE B 99 B 5 LYS B 77 ? ILE B 86 ? LYS B 113 ILE B 122 B 6 ALA B 101 ? LEU B 105 ? ALA B 137 LEU B 141 B 7 TRP B 37 ? THR B 40 ? TRP B 73 THR B 76 C 1 LEU B 46 ? TYR B 47 ? LEU B 82 TYR B 83 C 2 LYS B 52 ? ASN B 53 ? LYS B 88 ASN B 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O SER B 5 ? O SER B 41 N VAL B 162 ? N VAL B 198 A 2 3 O LEU B 129 ? O LEU B 165 N GLY B 136 ? N GLY B 172 A 3 4 N THR B 139 ? N THR B 175 O PRO B 208 ? O PRO B 244 A 4 5 O MET B 211 ? O MET B 247 N TYR B 220 ? N TYR B 256 A 5 6 O TRP B 227 ? O TRP B 263 N PHE B 239 ? N PHE B 275 A 6 7 N TYR B 240 ? N TYR B 276 O PHE B 186 ? O PHE B 222 B 1 2 N ARG B 20 ? N ARG B 56 O GLU B 25 ? O GLU B 61 B 2 3 O ALA B 30 ? O ALA B 66 N VAL B 16 ? N VAL B 52 B 3 4 O PHE B 19 ? O PHE B 55 N LEU B 60 ? N LEU B 96 B 4 5 N ILE B 63 ? N ILE B 99 O LYS B 77 ? O LYS B 113 B 5 6 N TYR B 85 ? N TYR B 121 O LEU B 102 ? O LEU B 138 B 6 7 O MET B 103 ? O MET B 139 N VAL B 2 ? N VAL B 38 C 1 2 N TYR B 47 ? N TYR B 83 O LYS B 52 ? O LYS B 88 # _pdbx_entry_details.entry_id 1D3Q _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 15 ? ? -128.07 -72.99 2 1 HIS B 79 ? ? -57.72 -6.64 3 1 TYR B 83 ? ? -161.48 84.08 4 1 ASN B 89 ? ? -165.63 75.30 5 1 HIS B 102 ? ? -134.82 -47.94 6 1 ASN B 110 ? ? 77.77 -7.83 7 1 PRO B 124 ? ? -54.38 -9.63 8 1 GLU B 130 ? ? -115.74 -75.13 9 1 SER B 148 ? ? -151.08 -158.05 10 1 LEU B 166 ? ? -68.46 78.43 11 1 ALA B 236 ? ? -79.68 -166.44 12 1 CYS B 237 ? ? 176.74 169.03 13 1 GLU B 238 ? ? -35.05 131.55 14 1 SER B 262 ? ? -108.35 -69.63 # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B ASN 53 B ASN 89 ? ASN 'GLYCOSYLATION SITE' 2 C TYS 10 H TYS 309 ? TYR O-SULFO-L-TYROSINE # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A THR 1 ? A THR 1 2 1 Y 1 A PHE 2 ? A PHE 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A SER 4 ? A SER 4 5 1 Y 1 A GLY 5 ? A GLY 5 6 1 Y 1 A ASP 34 ? A ASP 34 7 1 Y 1 A GLY 35 ? A GLY 35 8 1 Y 1 A ARG 36 ? A ARG 36 9 1 Y 1 B TRP 184 ? B TRP 148 10 1 Y 1 B THR 185 ? B THR 149 11 1 Y 1 B ALA 186 ? B ALA 150 12 1 Y 1 B ASN 187 ? B ASN 151 13 1 Y 1 B VAL 188 ? B VAL 152 14 1 Y 1 B GLY 189 ? B GLY 153 15 1 Y 1 B LYS 190 ? B LYS 154 16 1 Y 1 B GLY 294 ? B GLY 258 17 1 Y 1 B GLU 295 ? B GLU 259 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BT2 C1 C Y N 74 BT2 C2 C Y N 75 BT2 C3 C Y N 76 BT2 C4 C Y N 77 BT2 C5 C Y N 78 BT2 C6 C Y N 79 BT2 S1 S Y N 80 BT2 C8 C Y N 81 BT2 C9 C Y N 82 BT2 C7 C N N 83 BT2 C10 C Y N 84 BT2 C12 C Y N 85 BT2 C14 C Y N 86 BT2 C16 C Y N 87 BT2 C18 C Y N 88 BT2 C20 C Y N 89 BT2 O2 O N N 90 BT2 C24 C N N 91 BT2 C11 C Y N 92 BT2 C13 C Y N 93 BT2 C15 C Y N 94 BT2 C32 C Y N 95 BT2 C19 C Y N 96 BT2 C21 C Y N 97 BT2 O3 O N N 98 BT2 C25 C N N 99 BT2 C17 C N N 100 BT2 C23 C N N 101 BT2 C26 C N N 102 BT2 N2 N N N 103 BT2 C27 C N N 104 BT2 C22 C N N 105 BT2 N3 N N N 106 BT2 C28 C N N 107 BT2 C29 C N N 108 BT2 C30 C N N 109 BT2 C33 C N N 110 BT2 C34 C N N 111 BT2 H1 H N N 112 BT2 H2 H N N 113 BT2 H5 H N N 114 BT2 H6 H N N 115 BT2 H71 H N N 116 BT2 H72 H N N 117 BT2 H12 H N N 118 BT2 H14 H N N 119 BT2 H18 H N N 120 BT2 H20 H N N 121 BT2 H241 H N N 122 BT2 H242 H N N 123 BT2 H11 H N N 124 BT2 H15 H N N 125 BT2 H32 H N N 126 BT2 H21 H N N 127 BT2 H251 H N N 128 BT2 H252 H N N 129 BT2 H171 H N N 130 BT2 H172 H N N 131 BT2 H231 H N N 132 BT2 H232 H N N 133 BT2 H261 H N N 134 BT2 H262 H N N 135 BT2 H271 H N N 136 BT2 H272 H N N 137 BT2 H221 H N N 138 BT2 H222 H N N 139 BT2 H281 H N N 140 BT2 H282 H N N 141 BT2 H291 H N N 142 BT2 H292 H N N 143 BT2 H301 H N N 144 BT2 H302 H N N 145 BT2 H331 H N N 146 BT2 H332 H N N 147 BT2 H341 H N N 148 BT2 H342 H N N 149 CYS N N N N 150 CYS CA C N R 151 CYS C C N N 152 CYS O O N N 153 CYS CB C N N 154 CYS SG S N N 155 CYS OXT O N N 156 CYS H H N N 157 CYS H2 H N N 158 CYS HA H N N 159 CYS HB2 H N N 160 CYS HB3 H N N 161 CYS HG H N N 162 CYS HXT H N N 163 GLN N N N N 164 GLN CA C N S 165 GLN C C N N 166 GLN O O N N 167 GLN CB C N N 168 GLN CG C N N 169 GLN CD C N N 170 GLN OE1 O N N 171 GLN NE2 N N N 172 GLN OXT O N N 173 GLN H H N N 174 GLN H2 H N N 175 GLN HA H N N 176 GLN HB2 H N N 177 GLN HB3 H N N 178 GLN HG2 H N N 179 GLN HG3 H N N 180 GLN HE21 H N N 181 GLN HE22 H N N 182 GLN HXT H N N 183 GLU N N N N 184 GLU CA C N S 185 GLU C C N N 186 GLU O O N N 187 GLU CB C N N 188 GLU CG C N N 189 GLU CD C N N 190 GLU OE1 O N N 191 GLU OE2 O N N 192 GLU OXT O N N 193 GLU H H N N 194 GLU H2 H N N 195 GLU HA H N N 196 GLU HB2 H N N 197 GLU HB3 H N N 198 GLU HG2 H N N 199 GLU HG3 H N N 200 GLU HE2 H N N 201 GLU HXT H N N 202 GLY N N N N 203 GLY CA C N N 204 GLY C C N N 205 GLY O O N N 206 GLY OXT O N N 207 GLY H H N N 208 GLY H2 H N N 209 GLY HA2 H N N 210 GLY HA3 H N N 211 GLY HXT H N N 212 HIS N N N N 213 HIS CA C N S 214 HIS C C N N 215 HIS O O N N 216 HIS CB C N N 217 HIS CG C Y N 218 HIS ND1 N Y N 219 HIS CD2 C Y N 220 HIS CE1 C Y N 221 HIS NE2 N Y N 222 HIS OXT O N N 223 HIS H H N N 224 HIS H2 H N N 225 HIS HA H N N 226 HIS HB2 H N N 227 HIS HB3 H N N 228 HIS HD1 H N N 229 HIS HD2 H N N 230 HIS HE1 H N N 231 HIS HE2 H N N 232 HIS HXT H N N 233 ILE N N N N 234 ILE CA C N S 235 ILE C C N N 236 ILE O O N N 237 ILE CB C N S 238 ILE CG1 C N N 239 ILE CG2 C N N 240 ILE CD1 C N N 241 ILE OXT O N N 242 ILE H H N N 243 ILE H2 H N N 244 ILE HA H N N 245 ILE HB H N N 246 ILE HG12 H N N 247 ILE HG13 H N N 248 ILE HG21 H N N 249 ILE HG22 H N N 250 ILE HG23 H N N 251 ILE HD11 H N N 252 ILE HD12 H N N 253 ILE HD13 H N N 254 ILE HXT H N N 255 LEU N N N N 256 LEU CA C N S 257 LEU C C N N 258 LEU O O N N 259 LEU CB C N N 260 LEU CG C N N 261 LEU CD1 C N N 262 LEU CD2 C N N 263 LEU OXT O N N 264 LEU H H N N 265 LEU H2 H N N 266 LEU HA H N N 267 LEU HB2 H N N 268 LEU HB3 H N N 269 LEU HG H N N 270 LEU HD11 H N N 271 LEU HD12 H N N 272 LEU HD13 H N N 273 LEU HD21 H N N 274 LEU HD22 H N N 275 LEU HD23 H N N 276 LEU HXT H N N 277 LYS N N N N 278 LYS CA C N S 279 LYS C C N N 280 LYS O O N N 281 LYS CB C N N 282 LYS CG C N N 283 LYS CD C N N 284 LYS CE C N N 285 LYS NZ N N N 286 LYS OXT O N N 287 LYS H H N N 288 LYS H2 H N N 289 LYS HA H N N 290 LYS HB2 H N N 291 LYS HB3 H N N 292 LYS HG2 H N N 293 LYS HG3 H N N 294 LYS HD2 H N N 295 LYS HD3 H N N 296 LYS HE2 H N N 297 LYS HE3 H N N 298 LYS HZ1 H N N 299 LYS HZ2 H N N 300 LYS HZ3 H N N 301 LYS HXT H N N 302 MET N N N N 303 MET CA C N S 304 MET C C N N 305 MET O O N N 306 MET CB C N N 307 MET CG C N N 308 MET SD S N N 309 MET CE C N N 310 MET OXT O N N 311 MET H H N N 312 MET H2 H N N 313 MET HA H N N 314 MET HB2 H N N 315 MET HB3 H N N 316 MET HG2 H N N 317 MET HG3 H N N 318 MET HE1 H N N 319 MET HE2 H N N 320 MET HE3 H N N 321 MET HXT H N N 322 NA NA NA N N 323 NAG C1 C N R 324 NAG C2 C N R 325 NAG C3 C N R 326 NAG C4 C N S 327 NAG C5 C N R 328 NAG C6 C N N 329 NAG C7 C N N 330 NAG C8 C N N 331 NAG N2 N N N 332 NAG O1 O N N 333 NAG O3 O N N 334 NAG O4 O N N 335 NAG O5 O N N 336 NAG O6 O N N 337 NAG O7 O N N 338 NAG H1 H N N 339 NAG H2 H N N 340 NAG H3 H N N 341 NAG H4 H N N 342 NAG H5 H N N 343 NAG H61 H N N 344 NAG H62 H N N 345 NAG H81 H N N 346 NAG H82 H N N 347 NAG H83 H N N 348 NAG HN2 H N N 349 NAG HO1 H N N 350 NAG HO3 H N N 351 NAG HO4 H N N 352 NAG HO6 H N N 353 PHE N N N N 354 PHE CA C N S 355 PHE C C N N 356 PHE O O N N 357 PHE CB C N N 358 PHE CG C Y N 359 PHE CD1 C Y N 360 PHE CD2 C Y N 361 PHE CE1 C Y N 362 PHE CE2 C Y N 363 PHE CZ C Y N 364 PHE OXT O N N 365 PHE H H N N 366 PHE H2 H N N 367 PHE HA H N N 368 PHE HB2 H N N 369 PHE HB3 H N N 370 PHE HD1 H N N 371 PHE HD2 H N N 372 PHE HE1 H N N 373 PHE HE2 H N N 374 PHE HZ H N N 375 PHE HXT H N N 376 PRO N N N N 377 PRO CA C N S 378 PRO C C N N 379 PRO O O N N 380 PRO CB C N N 381 PRO CG C N N 382 PRO CD C N N 383 PRO OXT O N N 384 PRO H H N N 385 PRO HA H N N 386 PRO HB2 H N N 387 PRO HB3 H N N 388 PRO HG2 H N N 389 PRO HG3 H N N 390 PRO HD2 H N N 391 PRO HD3 H N N 392 PRO HXT H N N 393 SER N N N N 394 SER CA C N S 395 SER C C N N 396 SER O O N N 397 SER CB C N N 398 SER OG O N N 399 SER OXT O N N 400 SER H H N N 401 SER H2 H N N 402 SER HA H N N 403 SER HB2 H N N 404 SER HB3 H N N 405 SER HG H N N 406 SER HXT H N N 407 THR N N N N 408 THR CA C N S 409 THR C C N N 410 THR O O N N 411 THR CB C N R 412 THR OG1 O N N 413 THR CG2 C N N 414 THR OXT O N N 415 THR H H N N 416 THR H2 H N N 417 THR HA H N N 418 THR HB H N N 419 THR HG1 H N N 420 THR HG21 H N N 421 THR HG22 H N N 422 THR HG23 H N N 423 THR HXT H N N 424 TRP N N N N 425 TRP CA C N S 426 TRP C C N N 427 TRP O O N N 428 TRP CB C N N 429 TRP CG C Y N 430 TRP CD1 C Y N 431 TRP CD2 C Y N 432 TRP NE1 N Y N 433 TRP CE2 C Y N 434 TRP CE3 C Y N 435 TRP CZ2 C Y N 436 TRP CZ3 C Y N 437 TRP CH2 C Y N 438 TRP OXT O N N 439 TRP H H N N 440 TRP H2 H N N 441 TRP HA H N N 442 TRP HB2 H N N 443 TRP HB3 H N N 444 TRP HD1 H N N 445 TRP HE1 H N N 446 TRP HE3 H N N 447 TRP HZ2 H N N 448 TRP HZ3 H N N 449 TRP HH2 H N N 450 TRP HXT H N N 451 TYR N N N N 452 TYR CA C N S 453 TYR C C N N 454 TYR O O N N 455 TYR CB C N N 456 TYR CG C Y N 457 TYR CD1 C Y N 458 TYR CD2 C Y N 459 TYR CE1 C Y N 460 TYR CE2 C Y N 461 TYR CZ C Y N 462 TYR OH O N N 463 TYR OXT O N N 464 TYR H H N N 465 TYR H2 H N N 466 TYR HA H N N 467 TYR HB2 H N N 468 TYR HB3 H N N 469 TYR HD1 H N N 470 TYR HD2 H N N 471 TYR HE1 H N N 472 TYR HE2 H N N 473 TYR HH H N N 474 TYR HXT H N N 475 TYS N N N N 476 TYS CA C N S 477 TYS CB C N N 478 TYS CG C Y N 479 TYS CD1 C Y N 480 TYS CD2 C Y N 481 TYS CE1 C Y N 482 TYS CE2 C Y N 483 TYS CZ C Y N 484 TYS OH O N N 485 TYS S S N N 486 TYS O1 O N N 487 TYS O2 O N N 488 TYS O3 O N N 489 TYS C C N N 490 TYS O O N N 491 TYS OXT O N N 492 TYS H H N N 493 TYS H2 H N N 494 TYS HA H N N 495 TYS HB2 H N N 496 TYS HB3 H N N 497 TYS HD1 H N N 498 TYS HD2 H N N 499 TYS HE1 H N N 500 TYS HE2 H N N 501 TYS HO3 H N N 502 TYS HXT H N N 503 VAL N N N N 504 VAL CA C N S 505 VAL C C N N 506 VAL O O N N 507 VAL CB C N N 508 VAL CG1 C N N 509 VAL CG2 C N N 510 VAL OXT O N N 511 VAL H H N N 512 VAL H2 H N N 513 VAL HA H N N 514 VAL HB H N N 515 VAL HG11 H N N 516 VAL HG12 H N N 517 VAL HG13 H N N 518 VAL HG21 H N N 519 VAL HG22 H N N 520 VAL HG23 H N N 521 VAL HXT H N N 522 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BT2 C1 C2 doub Y N 70 BT2 C1 C6 sing Y N 71 BT2 C1 H1 sing N N 72 BT2 C2 C3 sing Y N 73 BT2 C2 H2 sing N N 74 BT2 C3 C4 doub Y N 75 BT2 C3 S1 sing Y N 76 BT2 C4 C5 sing Y N 77 BT2 C4 C9 sing Y N 78 BT2 C5 C6 doub Y N 79 BT2 C5 H5 sing N N 80 BT2 C6 H6 sing N N 81 BT2 S1 C8 sing Y N 82 BT2 C8 C9 doub Y N 83 BT2 C8 C10 sing Y N 84 BT2 C9 C7 sing N N 85 BT2 C7 C13 sing N N 86 BT2 C7 H71 sing N N 87 BT2 C7 H72 sing N N 88 BT2 C10 C12 doub Y N 89 BT2 C10 C20 sing Y N 90 BT2 C12 C14 sing Y N 91 BT2 C12 H12 sing N N 92 BT2 C14 C16 doub Y N 93 BT2 C14 H14 sing N N 94 BT2 C16 C18 sing Y N 95 BT2 C16 O2 sing N N 96 BT2 C18 C20 doub Y N 97 BT2 C18 H18 sing N N 98 BT2 C20 H20 sing N N 99 BT2 O2 C24 sing N N 100 BT2 C24 C34 sing N N 101 BT2 C24 H241 sing N N 102 BT2 C24 H242 sing N N 103 BT2 C11 C13 doub Y N 104 BT2 C11 C21 sing Y N 105 BT2 C11 H11 sing N N 106 BT2 C13 C15 sing Y N 107 BT2 C15 C32 doub Y N 108 BT2 C15 H15 sing N N 109 BT2 C32 C19 sing Y N 110 BT2 C32 H32 sing N N 111 BT2 C19 C21 doub Y N 112 BT2 C19 O3 sing N N 113 BT2 C21 H21 sing N N 114 BT2 O3 C25 sing N N 115 BT2 C25 C33 sing N N 116 BT2 C25 H251 sing N N 117 BT2 C25 H252 sing N N 118 BT2 C17 C23 sing N N 119 BT2 C17 C27 sing N N 120 BT2 C17 H171 sing N N 121 BT2 C17 H172 sing N N 122 BT2 C23 C26 sing N N 123 BT2 C23 H231 sing N N 124 BT2 C23 H232 sing N N 125 BT2 C26 N2 sing N N 126 BT2 C26 H261 sing N N 127 BT2 C26 H262 sing N N 128 BT2 N2 C27 sing N N 129 BT2 N2 C33 sing N N 130 BT2 C27 H271 sing N N 131 BT2 C27 H272 sing N N 132 BT2 C22 N3 sing N N 133 BT2 C22 C30 sing N N 134 BT2 C22 H221 sing N N 135 BT2 C22 H222 sing N N 136 BT2 N3 C28 sing N N 137 BT2 N3 C34 sing N N 138 BT2 C28 C29 sing N N 139 BT2 C28 H281 sing N N 140 BT2 C28 H282 sing N N 141 BT2 C29 C30 sing N N 142 BT2 C29 H291 sing N N 143 BT2 C29 H292 sing N N 144 BT2 C30 H301 sing N N 145 BT2 C30 H302 sing N N 146 BT2 C33 H331 sing N N 147 BT2 C33 H332 sing N N 148 BT2 C34 H341 sing N N 149 BT2 C34 H342 sing N N 150 CYS N CA sing N N 151 CYS N H sing N N 152 CYS N H2 sing N N 153 CYS CA C sing N N 154 CYS CA CB sing N N 155 CYS CA HA sing N N 156 CYS C O doub N N 157 CYS C OXT sing N N 158 CYS CB SG sing N N 159 CYS CB HB2 sing N N 160 CYS CB HB3 sing N N 161 CYS SG HG sing N N 162 CYS OXT HXT sing N N 163 GLN N CA sing N N 164 GLN N H sing N N 165 GLN N H2 sing N N 166 GLN CA C sing N N 167 GLN CA CB sing N N 168 GLN CA HA sing N N 169 GLN C O doub N N 170 GLN C OXT sing N N 171 GLN CB CG sing N N 172 GLN CB HB2 sing N N 173 GLN CB HB3 sing N N 174 GLN CG CD sing N N 175 GLN CG HG2 sing N N 176 GLN CG HG3 sing N N 177 GLN CD OE1 doub N N 178 GLN CD NE2 sing N N 179 GLN NE2 HE21 sing N N 180 GLN NE2 HE22 sing N N 181 GLN OXT HXT sing N N 182 GLU N CA sing N N 183 GLU N H sing N N 184 GLU N H2 sing N N 185 GLU CA C sing N N 186 GLU CA CB sing N N 187 GLU CA HA sing N N 188 GLU C O doub N N 189 GLU C OXT sing N N 190 GLU CB CG sing N N 191 GLU CB HB2 sing N N 192 GLU CB HB3 sing N N 193 GLU CG CD sing N N 194 GLU CG HG2 sing N N 195 GLU CG HG3 sing N N 196 GLU CD OE1 doub N N 197 GLU CD OE2 sing N N 198 GLU OE2 HE2 sing N N 199 GLU OXT HXT sing N N 200 GLY N CA sing N N 201 GLY N H sing N N 202 GLY N H2 sing N N 203 GLY CA C sing N N 204 GLY CA HA2 sing N N 205 GLY CA HA3 sing N N 206 GLY C O doub N N 207 GLY C OXT sing N N 208 GLY OXT HXT sing N N 209 HIS N CA sing N N 210 HIS N H sing N N 211 HIS N H2 sing N N 212 HIS CA C sing N N 213 HIS CA CB sing N N 214 HIS CA HA sing N N 215 HIS C O doub N N 216 HIS C OXT sing N N 217 HIS CB CG sing N N 218 HIS CB HB2 sing N N 219 HIS CB HB3 sing N N 220 HIS CG ND1 sing Y N 221 HIS CG CD2 doub Y N 222 HIS ND1 CE1 doub Y N 223 HIS ND1 HD1 sing N N 224 HIS CD2 NE2 sing Y N 225 HIS CD2 HD2 sing N N 226 HIS CE1 NE2 sing Y N 227 HIS CE1 HE1 sing N N 228 HIS NE2 HE2 sing N N 229 HIS OXT HXT sing N N 230 ILE N CA sing N N 231 ILE N H sing N N 232 ILE N H2 sing N N 233 ILE CA C sing N N 234 ILE CA CB sing N N 235 ILE CA HA sing N N 236 ILE C O doub N N 237 ILE C OXT sing N N 238 ILE CB CG1 sing N N 239 ILE CB CG2 sing N N 240 ILE CB HB sing N N 241 ILE CG1 CD1 sing N N 242 ILE CG1 HG12 sing N N 243 ILE CG1 HG13 sing N N 244 ILE CG2 HG21 sing N N 245 ILE CG2 HG22 sing N N 246 ILE CG2 HG23 sing N N 247 ILE CD1 HD11 sing N N 248 ILE CD1 HD12 sing N N 249 ILE CD1 HD13 sing N N 250 ILE OXT HXT sing N N 251 LEU N CA sing N N 252 LEU N H sing N N 253 LEU N H2 sing N N 254 LEU CA C sing N N 255 LEU CA CB sing N N 256 LEU CA HA sing N N 257 LEU C O doub N N 258 LEU C OXT sing N N 259 LEU CB CG sing N N 260 LEU CB HB2 sing N N 261 LEU CB HB3 sing N N 262 LEU CG CD1 sing N N 263 LEU CG CD2 sing N N 264 LEU CG HG sing N N 265 LEU CD1 HD11 sing N N 266 LEU CD1 HD12 sing N N 267 LEU CD1 HD13 sing N N 268 LEU CD2 HD21 sing N N 269 LEU CD2 HD22 sing N N 270 LEU CD2 HD23 sing N N 271 LEU OXT HXT sing N N 272 LYS N CA sing N N 273 LYS N H sing N N 274 LYS N H2 sing N N 275 LYS CA C sing N N 276 LYS CA CB sing N N 277 LYS CA HA sing N N 278 LYS C O doub N N 279 LYS C OXT sing N N 280 LYS CB CG sing N N 281 LYS CB HB2 sing N N 282 LYS CB HB3 sing N N 283 LYS CG CD sing N N 284 LYS CG HG2 sing N N 285 LYS CG HG3 sing N N 286 LYS CD CE sing N N 287 LYS CD HD2 sing N N 288 LYS CD HD3 sing N N 289 LYS CE NZ sing N N 290 LYS CE HE2 sing N N 291 LYS CE HE3 sing N N 292 LYS NZ HZ1 sing N N 293 LYS NZ HZ2 sing N N 294 LYS NZ HZ3 sing N N 295 LYS OXT HXT sing N N 296 MET N CA sing N N 297 MET N H sing N N 298 MET N H2 sing N N 299 MET CA C sing N N 300 MET CA CB sing N N 301 MET CA HA sing N N 302 MET C O doub N N 303 MET C OXT sing N N 304 MET CB CG sing N N 305 MET CB HB2 sing N N 306 MET CB HB3 sing N N 307 MET CG SD sing N N 308 MET CG HG2 sing N N 309 MET CG HG3 sing N N 310 MET SD CE sing N N 311 MET CE HE1 sing N N 312 MET CE HE2 sing N N 313 MET CE HE3 sing N N 314 MET OXT HXT sing N N 315 NAG C1 C2 sing N N 316 NAG C1 O1 sing N N 317 NAG C1 O5 sing N N 318 NAG C1 H1 sing N N 319 NAG C2 C3 sing N N 320 NAG C2 N2 sing N N 321 NAG C2 H2 sing N N 322 NAG C3 C4 sing N N 323 NAG C3 O3 sing N N 324 NAG C3 H3 sing N N 325 NAG C4 C5 sing N N 326 NAG C4 O4 sing N N 327 NAG C4 H4 sing N N 328 NAG C5 C6 sing N N 329 NAG C5 O5 sing N N 330 NAG C5 H5 sing N N 331 NAG C6 O6 sing N N 332 NAG C6 H61 sing N N 333 NAG C6 H62 sing N N 334 NAG C7 C8 sing N N 335 NAG C7 N2 sing N N 336 NAG C7 O7 doub N N 337 NAG C8 H81 sing N N 338 NAG C8 H82 sing N N 339 NAG C8 H83 sing N N 340 NAG N2 HN2 sing N N 341 NAG O1 HO1 sing N N 342 NAG O3 HO3 sing N N 343 NAG O4 HO4 sing N N 344 NAG O6 HO6 sing N N 345 PHE N CA sing N N 346 PHE N H sing N N 347 PHE N H2 sing N N 348 PHE CA C sing N N 349 PHE CA CB sing N N 350 PHE CA HA sing N N 351 PHE C O doub N N 352 PHE C OXT sing N N 353 PHE CB CG sing N N 354 PHE CB HB2 sing N N 355 PHE CB HB3 sing N N 356 PHE CG CD1 doub Y N 357 PHE CG CD2 sing Y N 358 PHE CD1 CE1 sing Y N 359 PHE CD1 HD1 sing N N 360 PHE CD2 CE2 doub Y N 361 PHE CD2 HD2 sing N N 362 PHE CE1 CZ doub Y N 363 PHE CE1 HE1 sing N N 364 PHE CE2 CZ sing Y N 365 PHE CE2 HE2 sing N N 366 PHE CZ HZ sing N N 367 PHE OXT HXT sing N N 368 PRO N CA sing N N 369 PRO N CD sing N N 370 PRO N H sing N N 371 PRO CA C sing N N 372 PRO CA CB sing N N 373 PRO CA HA sing N N 374 PRO C O doub N N 375 PRO C OXT sing N N 376 PRO CB CG sing N N 377 PRO CB HB2 sing N N 378 PRO CB HB3 sing N N 379 PRO CG CD sing N N 380 PRO CG HG2 sing N N 381 PRO CG HG3 sing N N 382 PRO CD HD2 sing N N 383 PRO CD HD3 sing N N 384 PRO OXT HXT sing N N 385 SER N CA sing N N 386 SER N H sing N N 387 SER N H2 sing N N 388 SER CA C sing N N 389 SER CA CB sing N N 390 SER CA HA sing N N 391 SER C O doub N N 392 SER C OXT sing N N 393 SER CB OG sing N N 394 SER CB HB2 sing N N 395 SER CB HB3 sing N N 396 SER OG HG sing N N 397 SER OXT HXT sing N N 398 THR N CA sing N N 399 THR N H sing N N 400 THR N H2 sing N N 401 THR CA C sing N N 402 THR CA CB sing N N 403 THR CA HA sing N N 404 THR C O doub N N 405 THR C OXT sing N N 406 THR CB OG1 sing N N 407 THR CB CG2 sing N N 408 THR CB HB sing N N 409 THR OG1 HG1 sing N N 410 THR CG2 HG21 sing N N 411 THR CG2 HG22 sing N N 412 THR CG2 HG23 sing N N 413 THR OXT HXT sing N N 414 TRP N CA sing N N 415 TRP N H sing N N 416 TRP N H2 sing N N 417 TRP CA C sing N N 418 TRP CA CB sing N N 419 TRP CA HA sing N N 420 TRP C O doub N N 421 TRP C OXT sing N N 422 TRP CB CG sing N N 423 TRP CB HB2 sing N N 424 TRP CB HB3 sing N N 425 TRP CG CD1 doub Y N 426 TRP CG CD2 sing Y N 427 TRP CD1 NE1 sing Y N 428 TRP CD1 HD1 sing N N 429 TRP CD2 CE2 doub Y N 430 TRP CD2 CE3 sing Y N 431 TRP NE1 CE2 sing Y N 432 TRP NE1 HE1 sing N N 433 TRP CE2 CZ2 sing Y N 434 TRP CE3 CZ3 doub Y N 435 TRP CE3 HE3 sing N N 436 TRP CZ2 CH2 doub Y N 437 TRP CZ2 HZ2 sing N N 438 TRP CZ3 CH2 sing Y N 439 TRP CZ3 HZ3 sing N N 440 TRP CH2 HH2 sing N N 441 TRP OXT HXT sing N N 442 TYR N CA sing N N 443 TYR N H sing N N 444 TYR N H2 sing N N 445 TYR CA C sing N N 446 TYR CA CB sing N N 447 TYR CA HA sing N N 448 TYR C O doub N N 449 TYR C OXT sing N N 450 TYR CB CG sing N N 451 TYR CB HB2 sing N N 452 TYR CB HB3 sing N N 453 TYR CG CD1 doub Y N 454 TYR CG CD2 sing Y N 455 TYR CD1 CE1 sing Y N 456 TYR CD1 HD1 sing N N 457 TYR CD2 CE2 doub Y N 458 TYR CD2 HD2 sing N N 459 TYR CE1 CZ doub Y N 460 TYR CE1 HE1 sing N N 461 TYR CE2 CZ sing Y N 462 TYR CE2 HE2 sing N N 463 TYR CZ OH sing N N 464 TYR OH HH sing N N 465 TYR OXT HXT sing N N 466 TYS N CA sing N N 467 TYS N H sing N N 468 TYS N H2 sing N N 469 TYS CA CB sing N N 470 TYS CA C sing N N 471 TYS CA HA sing N N 472 TYS CB CG sing N N 473 TYS CB HB2 sing N N 474 TYS CB HB3 sing N N 475 TYS CG CD1 doub Y N 476 TYS CG CD2 sing Y N 477 TYS CD1 CE1 sing Y N 478 TYS CD1 HD1 sing N N 479 TYS CD2 CE2 doub Y N 480 TYS CD2 HD2 sing N N 481 TYS CE1 CZ doub Y N 482 TYS CE1 HE1 sing N N 483 TYS CE2 CZ sing Y N 484 TYS CE2 HE2 sing N N 485 TYS CZ OH sing N N 486 TYS OH S sing N N 487 TYS S O1 doub N N 488 TYS S O2 doub N N 489 TYS S O3 sing N N 490 TYS O3 HO3 sing N N 491 TYS C O doub N N 492 TYS C OXT sing N N 493 TYS OXT HXT sing N N 494 VAL N CA sing N N 495 VAL N H sing N N 496 VAL N H2 sing N N 497 VAL CA C sing N N 498 VAL CA CB sing N N 499 VAL CA HA sing N N 500 VAL C O doub N N 501 VAL C OXT sing N N 502 VAL CB CG1 sing N N 503 VAL CB CG2 sing N N 504 VAL CB HB sing N N 505 VAL CG1 HG11 sing N N 506 VAL CG1 HG12 sing N N 507 VAL CG1 HG13 sing N N 508 VAL CG2 HG21 sing N N 509 VAL CG2 HG22 sing N N 510 VAL CG2 HG23 sing N N 511 VAL OXT HXT sing N N 512 # _atom_sites.entry_id 1D3Q _atom_sites.fract_transf_matrix[1][1] 0.014055 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002620 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013941 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013916 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O S # loop_