data_1D3R # _entry.id 1D3R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D3R pdb_00001d3r 10.2210/pdb1d3r/pdb NDB BD0017 ? ? RCSB RCSB009766 ? ? WWPDB D_1000009766 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-01-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D3R _pdbx_database_status.recvd_initial_deposition_date 1999-09-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rhee, S.' 1 'Han, Z.-J.' 2 'Liu, K.' 3 'Todd Miles, H.T.' 4 'Davies, D.R.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of a triple helical DNA with a triplex-duplex junction.' Biochemistry 38 16810 16815 1999 BICHAW US 0006-2960 0033 ? 10606513 10.1021/bi991811m 1 'Crystallization and preliminary X-ray data of a triplex DNA' 'To be Published' ? ? ? 1999 ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rhee, S.' 1 ? primary 'Han, Z.' 2 ? primary 'Liu, K.' 3 ? primary 'Miles, H.T.' 4 ? primary 'Davies, D.R.' 5 ? 1 'Rhee, S.' 6 ? 1 'Davies, D.R.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*(BRU)P*CP*CP*(BRU)P*CP*CP*GP*CP*GP*CP*G)-3') ; 3705.058 2 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*GP*GP*AP*G)-3') ; 2781.823 2 ? ? ? ? 3 water nat water 18.015 157 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(BRU)(DC)(DC)(BRU)(DC)(DC)(DG)(DC)(DG)(DC)(DG)' CUCCUCCGCGCG A,C ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DC)(DG)(DC)(DG)(DG)(DA)(DG)' CGCGCGGAG B,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 BRU n 1 3 DC n 1 4 DC n 1 5 BRU n 1 6 DC n 1 7 DC n 1 8 DG n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n 2 1 DC n 2 2 DG n 2 3 DC n 2 4 DG n 2 5 DC n 2 6 DG n 2 7 DG n 2 8 DA n 2 9 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 BRU 2 2 2 BRU +U A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 BRU 5 5 5 BRU +U A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 2 1 DC 1 13 13 DC C B . n B 2 2 DG 2 14 14 DG G B . n B 2 3 DC 3 15 15 DC C B . n B 2 4 DG 4 16 16 DG G B . n B 2 5 DC 5 17 17 DC C B . n B 2 6 DG 6 18 18 DG G B . n B 2 7 DG 7 19 19 DG G B . n B 2 8 DA 8 20 20 DA A B . n B 2 9 DG 9 21 21 DG G B . n C 1 1 DC 1 31 31 DC C C . n C 1 2 BRU 2 32 32 BRU +U C . n C 1 3 DC 3 33 33 DC C C . n C 1 4 DC 4 34 34 DC C C . n C 1 5 BRU 5 35 35 BRU +U C . n C 1 6 DC 6 36 36 DC C C . n C 1 7 DC 7 37 37 DC C C . n C 1 8 DG 8 38 38 DG G C . n C 1 9 DC 9 39 39 DC C C . n C 1 10 DG 10 40 40 DG G C . n C 1 11 DC 11 41 41 DC C C . n C 1 12 DG 12 42 42 DG G C . n D 2 1 DC 1 43 ? ? ? D . n D 2 2 DG 2 44 44 DG G D . n D 2 3 DC 3 45 45 DC C D . n D 2 4 DG 4 46 46 DG G D . n D 2 5 DC 5 47 47 DC C D . n D 2 6 DG 6 48 48 DG G D . n D 2 7 DG 7 49 49 DG G D . n D 2 8 DA 8 50 50 DA A D . n D 2 9 DG 9 51 51 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 100 100 HOH HOH A . E 3 HOH 2 102 102 HOH HOH A . E 3 HOH 3 104 104 HOH HOH A . E 3 HOH 4 106 106 HOH HOH A . E 3 HOH 5 107 107 HOH HOH A . E 3 HOH 6 110 110 HOH HOH A . E 3 HOH 7 112 112 HOH HOH A . E 3 HOH 8 118 118 HOH HOH A . E 3 HOH 9 121 121 HOH HOH A . E 3 HOH 10 122 122 HOH HOH A . E 3 HOH 11 125 125 HOH HOH A . E 3 HOH 12 126 126 HOH HOH A . E 3 HOH 13 127 127 HOH HOH A . E 3 HOH 14 128 128 HOH HOH A . E 3 HOH 15 130 130 HOH HOH A . E 3 HOH 16 137 137 HOH HOH A . E 3 HOH 17 138 138 HOH HOH A . E 3 HOH 18 139 139 HOH HOH A . E 3 HOH 19 140 140 HOH HOH A . E 3 HOH 20 157 157 HOH HOH A . E 3 HOH 21 160 160 HOH HOH A . E 3 HOH 22 164 164 HOH HOH A . E 3 HOH 23 165 165 HOH HOH A . E 3 HOH 24 168 168 HOH HOH A . E 3 HOH 25 169 169 HOH HOH A . E 3 HOH 26 180 180 HOH HOH A . E 3 HOH 27 186 186 HOH HOH A . E 3 HOH 28 187 187 HOH HOH A . E 3 HOH 29 193 193 HOH HOH A . E 3 HOH 30 196 196 HOH HOH A . E 3 HOH 31 212 212 HOH HOH A . E 3 HOH 32 304 304 HOH HOH A . E 3 HOH 33 306 306 HOH HOH A . E 3 HOH 34 307 307 HOH HOH A . E 3 HOH 35 309 309 HOH HOH A . E 3 HOH 36 311 311 HOH HOH A . E 3 HOH 37 312 312 HOH HOH A . E 3 HOH 38 313 313 HOH HOH A . E 3 HOH 39 319 319 HOH HOH A . E 3 HOH 40 320 320 HOH HOH A . E 3 HOH 41 321 321 HOH HOH A . E 3 HOH 42 332 332 HOH HOH A . E 3 HOH 43 333 333 HOH HOH A . E 3 HOH 44 335 335 HOH HOH A . E 3 HOH 45 336 336 HOH HOH A . E 3 HOH 46 340 340 HOH HOH A . F 3 HOH 1 108 108 HOH HOH B . F 3 HOH 2 132 132 HOH HOH B . F 3 HOH 3 135 135 HOH HOH B . F 3 HOH 4 145 145 HOH HOH B . F 3 HOH 5 146 146 HOH HOH B . F 3 HOH 6 155 155 HOH HOH B . F 3 HOH 7 162 162 HOH HOH B . F 3 HOH 8 170 170 HOH HOH B . F 3 HOH 9 171 171 HOH HOH B . F 3 HOH 10 176 176 HOH HOH B . F 3 HOH 11 181 181 HOH HOH B . F 3 HOH 12 188 188 HOH HOH B . F 3 HOH 13 189 189 HOH HOH B . F 3 HOH 14 190 190 HOH HOH B . F 3 HOH 15 200 200 HOH HOH B . F 3 HOH 16 202 202 HOH HOH B . F 3 HOH 17 203 203 HOH HOH B . F 3 HOH 18 324 324 HOH HOH B . F 3 HOH 19 326 326 HOH HOH B . F 3 HOH 20 328 328 HOH HOH B . F 3 HOH 21 329 329 HOH HOH B . F 3 HOH 22 346 346 HOH HOH B . G 3 HOH 1 101 101 HOH HOH C . G 3 HOH 2 105 105 HOH HOH C . G 3 HOH 3 109 109 HOH HOH C . G 3 HOH 4 113 113 HOH HOH C . G 3 HOH 5 115 115 HOH HOH C . G 3 HOH 6 119 119 HOH HOH C . G 3 HOH 7 120 120 HOH HOH C . G 3 HOH 8 123 123 HOH HOH C . G 3 HOH 9 129 129 HOH HOH C . G 3 HOH 10 131 131 HOH HOH C . G 3 HOH 11 142 142 HOH HOH C . G 3 HOH 12 144 144 HOH HOH C . G 3 HOH 13 147 147 HOH HOH C . G 3 HOH 14 148 148 HOH HOH C . G 3 HOH 15 149 149 HOH HOH C . G 3 HOH 16 153 153 HOH HOH C . G 3 HOH 17 156 156 HOH HOH C . G 3 HOH 18 159 159 HOH HOH C . G 3 HOH 19 161 161 HOH HOH C . G 3 HOH 20 172 172 HOH HOH C . G 3 HOH 21 174 174 HOH HOH C . G 3 HOH 22 175 175 HOH HOH C . G 3 HOH 23 179 179 HOH HOH C . G 3 HOH 24 182 182 HOH HOH C . G 3 HOH 25 184 184 HOH HOH C . G 3 HOH 26 185 185 HOH HOH C . G 3 HOH 27 192 192 HOH HOH C . G 3 HOH 28 197 197 HOH HOH C . G 3 HOH 29 198 198 HOH HOH C . G 3 HOH 30 204 204 HOH HOH C . G 3 HOH 31 206 206 HOH HOH C . G 3 HOH 32 207 207 HOH HOH C . G 3 HOH 33 210 210 HOH HOH C . G 3 HOH 34 305 305 HOH HOH C . G 3 HOH 35 310 310 HOH HOH C . G 3 HOH 36 316 316 HOH HOH C . G 3 HOH 37 317 317 HOH HOH C . G 3 HOH 38 318 318 HOH HOH C . G 3 HOH 39 322 322 HOH HOH C . G 3 HOH 40 323 323 HOH HOH C . G 3 HOH 41 330 330 HOH HOH C . G 3 HOH 42 331 331 HOH HOH C . G 3 HOH 43 334 334 HOH HOH C . G 3 HOH 44 337 337 HOH HOH C . G 3 HOH 45 338 338 HOH HOH C . G 3 HOH 46 343 343 HOH HOH C . G 3 HOH 47 344 344 HOH HOH C . H 3 HOH 1 103 103 HOH HOH D . H 3 HOH 2 111 111 HOH HOH D . H 3 HOH 3 114 114 HOH HOH D . H 3 HOH 4 116 116 HOH HOH D . H 3 HOH 5 117 117 HOH HOH D . H 3 HOH 6 124 124 HOH HOH D . H 3 HOH 7 133 133 HOH HOH D . H 3 HOH 8 134 134 HOH HOH D . H 3 HOH 9 136 136 HOH HOH D . H 3 HOH 10 143 143 HOH HOH D . H 3 HOH 11 150 150 HOH HOH D . H 3 HOH 12 151 151 HOH HOH D . H 3 HOH 13 152 152 HOH HOH D . H 3 HOH 14 154 154 HOH HOH D . H 3 HOH 15 158 158 HOH HOH D . H 3 HOH 16 163 163 HOH HOH D . H 3 HOH 17 166 166 HOH HOH D . H 3 HOH 18 167 167 HOH HOH D . H 3 HOH 19 173 173 HOH HOH D . H 3 HOH 20 177 177 HOH HOH D . H 3 HOH 21 178 178 HOH HOH D . H 3 HOH 22 183 183 HOH HOH D . H 3 HOH 23 195 195 HOH HOH D . H 3 HOH 24 199 199 HOH HOH D . H 3 HOH 25 201 201 HOH HOH D . H 3 HOH 26 205 205 HOH HOH D . H 3 HOH 27 208 208 HOH HOH D . H 3 HOH 28 209 209 HOH HOH D . H 3 HOH 29 215 215 HOH HOH D . H 3 HOH 30 300 300 HOH HOH D . H 3 HOH 31 301 301 HOH HOH D . H 3 HOH 32 302 302 HOH HOH D . H 3 HOH 33 303 303 HOH HOH D . H 3 HOH 34 308 308 HOH HOH D . H 3 HOH 35 314 314 HOH HOH D . H 3 HOH 36 315 315 HOH HOH D . H 3 HOH 37 325 325 HOH HOH D . H 3 HOH 38 327 327 HOH HOH D . H 3 HOH 39 339 339 HOH HOH D . H 3 HOH 40 341 341 HOH HOH D . H 3 HOH 41 342 342 HOH HOH D . H 3 HOH 42 345 345 HOH HOH D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 D DG 44 ? P ? D DG 2 P 2 1 Y 1 D DG 44 ? OP1 ? D DG 2 OP1 3 1 Y 1 D DG 44 ? OP2 ? D DG 2 OP2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 CNS refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 SHELX phasing . ? 5 # _cell.entry_id 1D3R _cell.length_a 53.800 _cell.length_b 53.800 _cell.length_c 43.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D3R _symmetry.space_group_name_H-M 'P 42' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 77 # _exptl.entry_id 1D3R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_percent_sol 48.83 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.20 _exptl_crystal_grow.pdbx_details 'MPD, NACL, MGCL2, SPERMINE, PH 5.2 AT 298 K, pH 5.20, VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 NACL ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 95.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-09-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9200 1.0 2 0.919392 1.0 3 0.914982 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X9B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X9B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9200, 0.919392, 0.914982' # _reflns.entry_id 1D3R _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.000 _reflns.d_resolution_high 1.800 _reflns.number_obs 127674 _reflns.number_all ? _reflns.percent_possible_obs 92.0 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.3000 _reflns.B_iso_Wilson_estimate 24.20 _reflns.pdbx_redundancy 5.700 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.404 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.70 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1D3R _refine.ls_number_reflns_obs 21581 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 96.3 _refine.ls_R_factor_obs 0.21 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.21 _refine.ls_R_factor_R_free 0.275 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 2375 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 823 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 980 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D3R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D3R _struct.title 'CRYSTAL STRUCTURE OF TRIPLEX DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D3R _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'TRIPLEX DNA AND ITS JUNCTION WITH A DUPLEX DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1D3R 1D3R ? ? ? 2 2 PDB 1D3R 1D3R ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D3R A 1 ? 12 ? 1D3R 1 ? 12 ? 1 12 2 2 1D3R B 1 ? 9 ? 1D3R 13 ? 21 ? 13 21 3 1 1D3R C 1 ? 12 ? 1D3R 31 ? 42 ? 31 42 4 2 1D3R D 1 ? 9 ? 1D3R 43 ? 51 ? 43 51 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 1 "O3'" ? ? ? 1_555 A BRU 2 P ? ? A DC 1 A BRU 2 1_555 ? ? ? ? ? ? ? 1.618 ? ? covale2 covale both ? A BRU 2 "O3'" ? ? ? 1_555 A DC 3 P ? ? A BRU 2 A DC 3 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale3 covale both ? A DC 4 "O3'" ? ? ? 1_555 A BRU 5 P ? ? A DC 4 A BRU 5 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale4 covale both ? A BRU 5 "O3'" ? ? ? 1_555 A DC 6 P ? ? A BRU 5 A DC 6 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale5 covale both ? C DC 1 "O3'" ? ? ? 1_555 C BRU 2 P ? ? C DC 31 C BRU 32 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale6 covale both ? C BRU 2 "O3'" ? ? ? 1_555 C DC 3 P ? ? C BRU 32 C DC 33 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale7 covale both ? C DC 4 "O3'" ? ? ? 1_555 C BRU 5 P ? ? C DC 34 C BRU 35 1_555 ? ? ? ? ? ? ? 1.623 ? ? covale8 covale both ? C BRU 5 "O3'" ? ? ? 1_555 C DC 6 P ? ? C BRU 35 C DC 36 1_555 ? ? ? ? ? ? ? 1.625 ? ? hydrog1 hydrog ? ? A DC 1 N4 ? ? ? 1_555 D DG 7 O6 ? ? A DC 1 D DG 49 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A BRU 2 N3 ? ? ? 1_555 D DA 8 N7 ? ? A BRU 2 D DA 50 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A BRU 2 O4 ? ? ? 1_555 D DA 8 N6 ? ? A BRU 2 D DA 50 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog4 hydrog ? ? A DC 3 N4 ? ? ? 1_555 D DG 9 O6 ? ? A DC 3 D DG 51 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog5 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 4 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A BRU 5 N3 ? ? ? 1_555 B DA 8 N1 ? ? A BRU 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A BRU 5 O4 ? ? ? 1_555 B DA 8 N6 ? ? A BRU 5 B DA 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 6 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 7 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 7 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 7 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 8 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 7 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 19 C DC 31 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog29 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C BRU 2 O4 ? ? B DA 20 C BRU 32 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog30 hydrog ? ? B DA 8 N7 ? ? ? 1_555 C BRU 2 N3 ? ? B DA 20 C BRU 32 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog31 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 21 C DC 33 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog32 hydrog ? ? C DC 4 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 34 D DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 34 D DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 34 D DG 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C BRU 5 N3 ? ? ? 1_555 D DA 8 N1 ? ? C BRU 35 D DA 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C BRU 5 O4 ? ? ? 1_555 D DA 8 N6 ? ? C BRU 35 D DA 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 7 N1 ? ? C DC 36 D DG 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 7 O6 ? ? C DC 36 D DG 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 7 N2 ? ? C DC 36 D DG 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 37 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 37 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 37 D DG 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DG 8 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 38 D DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DG 8 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 38 D DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DG 8 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 38 D DC 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 39 D DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 39 D DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 39 D DG 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 10 N1 ? ? ? 1_555 D DC 3 N3 ? ? C DG 40 D DC 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DG 10 N2 ? ? ? 1_555 D DC 3 O2 ? ? C DG 40 D DC 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DG 10 O6 ? ? ? 1_555 D DC 3 N4 ? ? C DG 40 D DC 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DC 11 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 41 D DG 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C DC 11 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 41 D DG 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DC 11 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 41 D DG 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 C DG 42 ? ? O C HOH 119 ? ? 2.01 2 1 O A HOH 107 ? ? O A HOH 306 ? ? 2.03 3 1 O A HOH 102 ? ? O A HOH 306 ? ? 2.06 4 1 OP2 A DG 12 ? ? O A HOH 306 ? ? 2.07 5 1 O C HOH 119 ? ? O C HOH 310 ? ? 2.15 6 1 O A HOH 306 ? ? O A HOH 307 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 128 ? ? 1_555 O C HOH 119 ? ? 1_565 2.09 2 1 O A HOH 309 ? ? 1_555 O C HOH 119 ? ? 1_565 2.13 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.75 108.30 2.45 0.30 N 2 1 "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? "O3'" A DG 12 ? ? 131.67 112.30 19.37 2.00 N 3 1 "O5'" B DC 13 ? ? "C5'" B DC 13 ? ? "C4'" B DC 13 ? ? 103.88 109.40 -5.52 0.80 N 4 1 N9 C DG 40 ? ? "C1'" C DG 40 ? ? "C2'" C DG 40 ? ? 122.85 114.30 8.55 1.40 N 5 1 "O4'" C DG 40 ? ? "C1'" C DG 40 ? ? N9 C DG 40 ? ? 110.66 108.30 2.36 0.30 N 6 1 "O4'" C DC 41 ? ? "C1'" C DC 41 ? ? N1 C DC 41 ? ? 110.43 108.30 2.13 0.30 N 7 1 "O5'" D DG 44 ? ? "C5'" D DG 44 ? ? "C4'" D DG 44 ? ? 134.53 111.00 23.53 2.50 N 8 1 "O4'" D DG 51 ? ? "C1'" D DG 51 ? ? N9 D DG 51 ? ? 110.45 108.30 2.15 0.30 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C3'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id DG _pdbx_validate_chiral.auth_seq_id 12 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 12 ? ? 0.056 'SIDE CHAIN' 2 1 DG B 14 ? ? 0.049 'SIDE CHAIN' 3 1 DC C 39 ? ? 0.063 'SIDE CHAIN' 4 1 DG D 44 ? ? 0.082 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 2 A BRU 2 ? DU ? 2 A BRU 5 A BRU 5 ? DU ? 3 C BRU 2 C BRU 32 ? DU ? 4 C BRU 5 C BRU 35 ? DU ? # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id D _pdbx_unobs_or_zero_occ_residues.auth_comp_id DC _pdbx_unobs_or_zero_occ_residues.auth_seq_id 43 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id D _pdbx_unobs_or_zero_occ_residues.label_comp_id DC _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 HOH O H1 sing N N 147 HOH O H2 sing N N 148 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D3R 'double helix' 1D3R 'b-form double helix' 1D3R 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 A DC 11 1_555 -0.204 -0.007 0.281 -10.713 0.332 -3.949 1 B_DG14:DC11_A B 14 ? A 11 ? 19 1 1 B DC 3 1_555 A DG 10 1_555 0.061 -0.010 0.336 -6.715 -0.146 -4.306 2 B_DC15:DG10_A B 15 ? A 10 ? 19 1 1 B DG 4 1_555 A DC 9 1_555 0.122 -0.015 0.033 -0.264 -8.434 -3.751 3 B_DG16:DC9_A B 16 ? A 9 ? 19 1 1 B DC 5 1_555 A DG 8 1_555 0.064 -0.101 -0.314 7.390 -8.074 -3.213 4 B_DC17:DG8_A B 17 ? A 8 ? 19 1 1 B DG 6 1_555 A DC 7 1_555 -0.303 -0.082 -0.120 4.091 -11.078 -0.932 5 B_DG18:DC7_A B 18 ? A 7 ? 19 1 1 B DG 7 1_555 A DC 6 1_555 -0.188 -0.182 -0.048 8.390 -12.916 1.347 6 B_DG19:DC6_A B 19 ? A 6 ? 19 1 1 B DA 8 1_555 A BRU 5 1_555 -0.046 -0.072 0.041 -3.319 -17.650 2.550 7 B_DA20:BRU5_A B 20 ? A 5 ? 20 1 1 B DG 9 1_555 A DC 4 1_555 -0.364 -0.144 -0.116 -1.986 -5.566 1.614 8 B_DG21:DC4_A B 21 ? A 4 ? 19 1 1 C DC 4 1_555 D DG 9 1_555 0.268 -0.068 -0.111 5.499 -13.057 -0.641 9 C_DC34:DG51_D C 34 ? D 51 ? 19 1 1 C BRU 5 1_555 D DA 8 1_555 -0.059 -0.092 0.230 7.375 -15.454 1.918 10 C_BRU35:DA50_D C 35 ? D 50 ? 20 1 1 C DC 6 1_555 D DG 7 1_555 0.331 -0.198 -0.297 1.259 -14.015 2.026 11 C_DC36:DG49_D C 36 ? D 49 ? 19 1 1 C DC 7 1_555 D DG 6 1_555 0.195 -0.032 0.037 -7.385 -15.200 -0.724 12 C_DC37:DG48_D C 37 ? D 48 ? 19 1 1 C DG 8 1_555 D DC 5 1_555 -0.414 -0.072 0.068 -4.698 -4.232 0.984 13 C_DG38:DC47_D C 38 ? D 47 ? 19 1 1 C DC 9 1_555 D DG 4 1_555 0.214 -0.114 0.177 -4.507 -12.562 -2.171 14 C_DC39:DG46_D C 39 ? D 46 ? 19 1 1 C DG 10 1_555 D DC 3 1_555 -0.121 0.006 0.168 1.505 -2.020 1.313 15 C_DG40:DC45_D C 40 ? D 45 ? 19 1 1 C DC 11 1_555 D DG 2 1_555 0.340 -0.144 0.251 4.995 0.375 -3.243 16 C_DC41:DG44_D C 41 ? D 44 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 A DC 11 1_555 B DC 3 1_555 A DG 10 1_555 0.617 0.295 3.326 0.179 -1.702 35.661 0.731 -0.980 3.311 -2.777 -0.292 35.701 1 BB_DG14DC15:DG10DC11_AA B 14 ? A 11 ? B 15 ? A 10 ? 1 B DC 3 1_555 A DG 10 1_555 B DG 4 1_555 A DC 9 1_555 -0.599 0.795 3.233 1.158 5.216 30.498 0.475 1.348 3.296 9.822 -2.180 30.951 2 BB_DC15DG16:DC9DG10_AA B 15 ? A 10 ? B 16 ? A 9 ? 1 B DG 4 1_555 A DC 9 1_555 B DC 5 1_555 A DG 8 1_555 0.736 -0.025 3.132 4.368 4.862 34.094 -0.767 -0.583 3.166 8.199 -7.366 34.697 3 BB_DG16DC17:DG8DC9_AA B 16 ? A 9 ? B 17 ? A 8 ? 1 B DC 5 1_555 A DG 8 1_555 B DG 6 1_555 A DC 7 1_555 -0.204 1.131 3.506 0.325 8.168 35.420 0.547 0.377 3.666 13.208 -0.525 36.322 4 BB_DC17DG18:DC7DG8_AA B 17 ? A 8 ? B 18 ? A 7 ? 1 B DG 6 1_555 A DC 7 1_555 B DG 7 1_555 A DC 6 1_555 0.313 0.097 3.211 -1.163 5.693 28.397 -1.042 -0.879 3.155 11.454 2.339 28.973 5 BB_DG18DG19:DC6DC7_AA B 18 ? A 7 ? B 19 ? A 6 ? 1 B DG 7 1_555 A DC 6 1_555 B DA 8 1_555 A BRU 5 1_555 0.732 -0.838 3.389 0.094 2.107 32.359 -1.882 -1.294 3.332 3.776 -0.168 32.426 6 BB_DG19DA20:BRU5DC6_AA B 19 ? A 6 ? B 20 ? A 5 ? 1 B DA 8 1_555 A BRU 5 1_555 B DG 9 1_555 A DC 4 1_555 -0.459 -0.342 3.192 0.370 6.531 32.294 -1.678 0.870 3.061 11.593 -0.658 32.932 7 BB_DA20DG21:DC4BRU5_AA B 20 ? A 5 ? B 21 ? A 4 ? 1 B DG 9 1_555 A DC 4 1_555 C DC 4 1_555 D DG 9 1_555 -0.463 3.367 3.133 0.510 -0.828 -35.226 -5.442 -0.691 3.215 1.368 0.843 -35.239 8 BC_DG21DC34:DG51DC4_DA B 21 ? A 4 ? C 34 ? D 51 ? 1 C DC 4 1_555 D DG 9 1_555 C BRU 5 1_555 D DA 8 1_555 0.479 -0.294 3.278 -2.194 5.097 33.130 -1.337 -1.185 3.162 8.861 3.815 33.579 9 CC_DC34BRU35:DA50DG51_DD C 34 ? D 51 ? C 35 ? D 50 ? 1 C BRU 5 1_555 D DA 8 1_555 C DC 6 1_555 D DG 7 1_555 -0.630 -0.724 3.355 1.969 -0.100 32.187 -1.285 1.492 3.314 -0.181 -3.547 32.246 10 CC_BRU35DC36:DG49DA50_DD C 35 ? D 50 ? C 36 ? D 49 ? 1 C DC 6 1_555 D DG 7 1_555 C DC 7 1_555 D DG 6 1_555 -0.451 -0.343 3.533 -3.340 8.757 31.001 -2.279 0.176 3.344 15.933 6.076 32.354 11 CC_DC36DC37:DG48DG49_DD C 36 ? D 49 ? C 37 ? D 48 ? 1 C DC 7 1_555 D DG 6 1_555 C DG 8 1_555 D DC 5 1_555 0.571 0.667 3.226 -0.143 8.602 30.894 -0.363 -1.061 3.285 15.767 0.263 32.042 12 CC_DC37DG38:DC47DG48_DD C 37 ? D 48 ? C 38 ? D 47 ? 1 C DG 8 1_555 D DC 5 1_555 C DC 9 1_555 D DG 4 1_555 -1.397 1.367 3.372 -4.165 1.198 38.764 1.895 1.559 3.537 1.799 6.252 38.996 13 CC_DG38DC39:DG46DC47_DD C 38 ? D 47 ? C 39 ? D 46 ? 1 C DC 9 1_555 D DG 4 1_555 C DG 10 1_555 D DC 3 1_555 0.789 0.974 3.261 -0.593 3.822 28.316 1.092 -1.735 3.344 7.768 1.206 28.574 14 CC_DC39DG40:DC45DG46_DD C 39 ? D 46 ? C 40 ? D 45 ? 1 C DG 10 1_555 D DC 3 1_555 C DC 11 1_555 D DG 2 1_555 -0.541 0.404 3.266 -0.162 -0.431 39.432 0.649 0.782 3.264 -0.638 0.240 39.435 15 CC_DG40DC41:DG44DC45_DD C 40 ? D 45 ? C 41 ? D 44 ? # _atom_sites.entry_id 1D3R _atom_sites.fract_transf_matrix[1][1] 0.018587 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018587 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023202 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_