data_1D43 # _entry.id 1D43 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D43 pdb_00001d43 10.2210/pdb1d43/pdb RCSB GDL010 ? ? WWPDB D_1000172648 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-08-24 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_struct_conn_angle 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.value' 10 5 'Structure model' '_struct_conn.pdbx_dist_value' 11 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D43 _pdbx_database_status.recvd_initial_deposition_date 1991-06-04 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Quintana, J.R.' 1 'Lipanov, A.A.' 2 'Dickerson, R.E.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. ; Biochemistry 30 10294 10306 1991 BICHAW US 0006-2960 0033 ? 1718416 10.1021/bi00106a030 1 'The Molecular Structure of the Complex of Hoechst 33258 and the DNA Dodecamer d(CGCGAATTCGCG)' 'Nucleic Acids Res.' 16 2671 2690 1988 NARHAD UK 0305-1048 0389 ? ? ? 2 'Binding of Hoechst 33258 to the Minor Groove of B-DNA' J.Mol.Biol. 196 257 271 1987 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Isohelical Analysis of DNA Groove-Binding Drugs' J.Med.Chem. 29 727 733 1986 JMCMAR US 0022-2623 0151 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Quintana, J.R.' 1 ? primary 'Lipanov, A.A.' 2 ? primary 'Dickerson, R.E.' 3 ? 1 'Teng, M.' 4 ? 1 'Usman, N.' 5 ? 1 'Frederick, C.A.' 6 ? 1 'Wang, A.H.-J.' 7 ? 2 'Pjura, P.E.' 8 ? 2 'Grzeskowiak, K.' 9 ? 2 'Dickerson, R.E.' 10 ? 3 'Goodsell, D.' 11 ? 3 'Dickerson, R.E.' 12 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 424.498 1 ? ? ? ? 4 water nat water 18.015 67 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" HT 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 HT non-polymer . "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" 'HOECHST 33258' 'C25 H24 N6 O' 424.498 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DC 9 21 21 DC C B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 26 26 MG MO6 A . D 3 HT 1 25 25 HT HT B . E 4 HOH 1 27 27 HOH HOH A . E 4 HOH 2 28 28 HOH HOH A . E 4 HOH 3 30 30 HOH HOH A . E 4 HOH 4 31 31 HOH HOH A . E 4 HOH 5 33 33 HOH HOH A . E 4 HOH 6 35 35 HOH HOH A . E 4 HOH 7 38 38 HOH HOH A . E 4 HOH 8 39 39 HOH HOH A . E 4 HOH 9 42 42 HOH HOH A . E 4 HOH 10 44 44 HOH HOH A . E 4 HOH 11 46 46 HOH HOH A . E 4 HOH 12 50 50 HOH HOH A . E 4 HOH 13 51 51 HOH HOH A . E 4 HOH 14 52 52 HOH HOH A . E 4 HOH 15 54 54 HOH HOH A . E 4 HOH 16 56 56 HOH HOH A . E 4 HOH 17 58 58 HOH HOH A . E 4 HOH 18 60 60 HOH HOH A . E 4 HOH 19 61 61 HOH HOH A . E 4 HOH 20 62 62 HOH HOH A . E 4 HOH 21 63 63 HOH HOH A . E 4 HOH 22 66 66 HOH HOH A . E 4 HOH 23 70 70 HOH HOH A . E 4 HOH 24 71 71 HOH HOH A . E 4 HOH 25 72 72 HOH HOH A . E 4 HOH 26 73 73 HOH HOH A . E 4 HOH 27 75 75 HOH HOH A . E 4 HOH 28 76 76 HOH HOH A . E 4 HOH 29 77 77 HOH HOH A . E 4 HOH 30 79 79 HOH HOH A . E 4 HOH 31 80 80 HOH HOH A . E 4 HOH 32 84 84 HOH HOH A . E 4 HOH 33 86 86 HOH HOH A . E 4 HOH 34 87 87 HOH HOH A . E 4 HOH 35 89 26 HOH MO6 A . E 4 HOH 36 90 26 HOH MO6 A . E 4 HOH 37 91 26 HOH MO6 A . E 4 HOH 38 93 26 HOH MO6 A . F 4 HOH 1 29 29 HOH HOH B . F 4 HOH 2 32 32 HOH HOH B . F 4 HOH 3 34 34 HOH HOH B . F 4 HOH 4 36 36 HOH HOH B . F 4 HOH 5 37 37 HOH HOH B . F 4 HOH 6 40 40 HOH HOH B . F 4 HOH 7 41 41 HOH HOH B . F 4 HOH 8 43 43 HOH HOH B . F 4 HOH 9 45 45 HOH HOH B . F 4 HOH 10 47 47 HOH HOH B . F 4 HOH 11 48 48 HOH HOH B . F 4 HOH 12 49 49 HOH HOH B . F 4 HOH 13 53 53 HOH HOH B . F 4 HOH 14 55 55 HOH HOH B . F 4 HOH 15 57 57 HOH HOH B . F 4 HOH 16 59 59 HOH HOH B . F 4 HOH 17 64 64 HOH HOH B . F 4 HOH 18 65 65 HOH HOH B . F 4 HOH 19 67 67 HOH HOH B . F 4 HOH 20 68 68 HOH HOH B . F 4 HOH 21 69 69 HOH HOH B . F 4 HOH 22 74 74 HOH HOH B . F 4 HOH 23 78 78 HOH HOH B . F 4 HOH 24 81 81 HOH HOH B . F 4 HOH 25 82 82 HOH HOH B . F 4 HOH 26 83 83 HOH HOH B . F 4 HOH 27 85 85 HOH HOH B . F 4 HOH 28 88 26 HOH MO6 B . F 4 HOH 29 92 26 HOH MO6 B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D43 _cell.length_a 23.950 _cell.length_b 38.990 _cell.length_c 65.180 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1D43 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1D43 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 40.77 _exptl_crystal.density_Matthews 2.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.90 _exptl_crystal_grow.pdbx_details 'pH 6.90, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'MG ACETATE' ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 273.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _refine.entry_id 1D43 _refine.ls_number_reflns_obs 2540 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1570000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 67 _refine_hist.number_atoms_total 586 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 8.000 # _database_PDB_matrix.entry_id 1D43 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D43 _struct.title 'DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX: 0 DEGREES C, PIPERAZINE UP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D43 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D43 _struct_ref.pdbx_db_accession 1D43 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D43 A 1 ? 12 ? 1D43 1 ? 12 ? 1 12 2 1 1D43 B 1 ? 12 ? 1D43 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 89 1_555 ? ? ? ? ? ? ? 1.928 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 90 1_555 ? ? ? ? ? ? ? 1.951 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 91 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 26 A HOH 93 1_555 ? ? ? ? ? ? ? 1.958 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 88 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 26 B HOH 92 1_555 ? ? ? ? ? ? ? 1.980 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 89 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 90 ? 1_555 91.9 ? 2 O ? E HOH . ? A HOH 89 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 91 ? 1_555 87.4 ? 3 O ? E HOH . ? A HOH 90 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 91 ? 1_555 177.5 ? 4 O ? E HOH . ? A HOH 89 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 93 ? 1_555 89.8 ? 5 O ? E HOH . ? A HOH 90 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 93 ? 1_555 92.9 ? 6 O ? E HOH . ? A HOH 91 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? E HOH . ? A HOH 93 ? 1_555 89.6 ? 7 O ? E HOH . ? A HOH 89 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 88 ? 1_555 177.0 ? 8 O ? E HOH . ? A HOH 90 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 88 ? 1_555 90.6 ? 9 O ? E HOH . ? A HOH 91 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 88 ? 1_555 90.2 ? 10 O ? E HOH . ? A HOH 93 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 88 ? 1_555 88.3 ? 11 O ? E HOH . ? A HOH 89 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 92 ? 1_555 94.1 ? 12 O ? E HOH . ? A HOH 90 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 92 ? 1_555 91.3 ? 13 O ? E HOH . ? A HOH 91 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 92 ? 1_555 86.3 ? 14 O ? E HOH . ? A HOH 93 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 92 ? 1_555 174.2 ? 15 O ? F HOH . ? B HOH 88 ? 1_555 MG ? C MG . ? A MG 26 ? 1_555 O ? F HOH . ? B HOH 92 ? 1_555 87.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B HT 25 ? 9 'BINDING SITE FOR RESIDUE HT B 25' AC2 Software A MG 26 ? 6 'BINDING SITE FOR RESIDUE MG A 26' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 9 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 9 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 9 DC A 9 ? DC A 9 . ? 1_555 ? 5 AC1 9 DA B 6 ? DA B 18 . ? 1_555 ? 6 AC1 9 DT B 7 ? DT B 19 . ? 1_555 ? 7 AC1 9 DT B 8 ? DT B 20 . ? 1_555 ? 8 AC1 9 DC B 9 ? DC B 21 . ? 1_555 ? 9 AC1 9 HOH F . ? HOH B 83 . ? 1_555 ? 10 AC2 6 HOH E . ? HOH A 89 . ? 1_555 ? 11 AC2 6 HOH E . ? HOH A 90 . ? 1_555 ? 12 AC2 6 HOH E . ? HOH A 91 . ? 1_555 ? 13 AC2 6 HOH E . ? HOH A 93 . ? 1_555 ? 14 AC2 6 HOH F . ? HOH B 88 . ? 1_555 ? 15 AC2 6 HOH F . ? HOH B 92 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 31 ? ? 1_555 O B HOH 85 ? ? 1_655 1.87 2 1 "C5'" A DG 12 ? ? 1_555 O B HOH 55 ? ? 2_664 1.90 3 1 N3 B DG 16 ? ? 1_555 "O3'" B DG 24 ? ? 2_664 2.10 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 1.383 1.446 -0.063 0.010 N 2 1 "O4'" B DC 21 ? ? "C4'" B DC 21 ? ? 1.378 1.446 -0.068 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 116.93 109.80 7.13 1.10 N 2 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 123.98 119.90 4.08 0.50 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 118.48 121.90 -3.42 0.40 N 4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 123.53 118.00 5.53 0.70 N 5 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 104.35 119.60 -15.25 1.50 N 6 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 122.74 110.70 12.04 1.20 N 7 1 OP1 A DC 3 ? ? P A DC 3 ? ? OP2 A DC 3 ? ? 107.92 119.60 -11.68 1.50 N 8 1 "O5'" A DC 3 ? ? P A DC 3 ? ? OP1 A DC 3 ? ? 123.29 110.70 12.59 1.20 N 9 1 P A DC 3 ? ? "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 136.58 120.90 15.68 1.60 N 10 1 "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? "C3'" A DC 3 ? ? 99.92 104.50 -4.58 0.40 N 11 1 C6 A DC 3 ? ? N1 A DC 3 ? ? C2 A DC 3 ? ? 122.77 120.30 2.47 0.40 N 12 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 138.15 119.70 18.45 1.20 Y 13 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP1 A DG 4 ? ? 98.27 105.70 -7.43 0.90 N 14 1 "O5'" A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 120.13 110.70 9.43 1.20 N 15 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 101.12 109.40 -8.28 0.80 N 16 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 96.38 102.40 -6.02 0.80 N 17 1 C6 A DA 5 ? ? N1 A DA 5 ? ? C2 A DA 5 ? ? 122.93 118.60 4.33 0.60 N 18 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 125.68 129.30 -3.62 0.50 N 19 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 136.09 119.70 16.39 1.20 Y 20 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 125.40 129.30 -3.90 0.50 N 21 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 128.28 119.70 8.58 1.20 Y 22 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 103.91 109.40 -5.49 0.80 N 23 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 122.73 127.20 -4.47 0.60 N 24 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 119.00 115.20 3.80 0.60 N 25 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 132.90 119.70 13.20 1.20 Y 26 1 "O5'" A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 123.67 110.70 12.97 1.20 N 27 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 122.10 127.20 -5.10 0.60 N 28 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 119.03 115.20 3.83 0.60 N 29 1 N3 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 115.22 119.90 -4.68 0.60 N 30 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 140.39 119.70 20.69 1.20 Y 31 1 C5 A DC 9 ? ? C6 A DC 9 ? ? N1 A DC 9 ? ? 124.29 121.00 3.29 0.50 N 32 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 123.17 118.90 4.27 0.60 N 33 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.58 102.40 -4.82 0.80 N 34 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 113.26 108.30 4.96 0.30 N 35 1 N3 A DG 10 ? ? C2 A DG 10 ? ? N2 A DG 10 ? ? 114.97 119.90 -4.93 0.70 N 36 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.47 128.60 -4.13 0.60 N 37 1 "O5'" A DC 11 ? ? P A DC 11 ? ? OP2 A DC 11 ? ? 125.65 110.70 14.95 1.20 N 38 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 102.18 108.00 -5.82 0.70 N 39 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.15 108.30 3.85 0.30 N 40 1 C2 B DC 13 ? ? N3 B DC 13 ? ? C4 B DC 13 ? ? 124.11 119.90 4.21 0.50 N 41 1 N3 B DC 13 ? ? C4 B DC 13 ? ? C5 B DC 13 ? ? 118.61 121.90 -3.29 0.40 N 42 1 C5 B DG 14 ? ? C6 B DG 14 ? ? N1 B DG 14 ? ? 114.83 111.50 3.33 0.50 N 43 1 "O5'" B DC 15 ? ? P B DC 15 ? ? OP1 B DC 15 ? ? 118.76 110.70 8.06 1.20 N 44 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 104.23 109.40 -5.17 0.80 N 45 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 109.85 106.80 3.05 0.50 N 46 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 102.90 108.00 -5.10 0.70 N 47 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DG 16 ? ? 133.11 119.70 13.41 1.20 Y 48 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 113.00 108.30 4.70 0.30 N 49 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 135.84 119.70 16.14 1.20 Y 50 1 "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 99.69 109.40 -9.71 0.80 N 51 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 111.88 108.30 3.58 0.30 N 52 1 OP1 B DA 18 ? ? P B DA 18 ? ? OP2 B DA 18 ? ? 109.71 119.60 -9.89 1.50 N 53 1 C6 B DA 18 ? ? N1 B DA 18 ? ? C2 B DA 18 ? ? 125.28 118.60 6.68 0.60 N 54 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 122.62 129.30 -6.68 0.50 N 55 1 C2 B DA 18 ? ? N3 B DA 18 ? ? C4 B DA 18 ? ? 113.63 110.60 3.03 0.50 N 56 1 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 113.48 117.70 -4.22 0.50 N 57 1 "C3'" B DA 18 ? ? "O3'" B DA 18 ? ? P B DT 19 ? ? 133.42 119.70 13.72 1.20 Y 58 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.17 108.30 1.87 0.30 N 59 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 122.22 127.20 -4.98 0.60 N 60 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 119.26 122.90 -3.64 0.60 N 61 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DC 21 ? ? 128.55 119.70 8.85 1.20 Y 62 1 "O3'" B DT 20 ? ? P B DC 21 ? ? OP1 B DC 21 ? ? 117.75 110.50 7.25 1.10 Y 63 1 "O5'" B DC 21 ? ? "C5'" B DC 21 ? ? "C4'" B DC 21 ? ? 102.89 109.40 -6.51 0.80 N 64 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 101.28 108.00 -6.72 0.70 N 65 1 C2 B DC 21 ? ? N3 B DC 21 ? ? C4 B DC 21 ? ? 123.36 119.90 3.46 0.50 N 66 1 N3 B DC 21 ? ? C4 B DC 21 ? ? C5 B DC 21 ? ? 118.53 121.90 -3.37 0.40 N 67 1 "C3'" B DC 21 ? ? "O3'" B DC 21 ? ? P B DG 22 ? ? 130.32 119.70 10.62 1.20 Y 68 1 P B DG 22 ? ? "O5'" B DG 22 ? ? "C5'" B DG 22 ? ? 132.21 120.90 11.31 1.60 N 69 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 96.34 102.40 -6.06 0.80 N 70 1 "O5'" B DC 23 ? ? P B DC 23 ? ? OP1 B DC 23 ? ? 119.50 110.70 8.80 1.20 N 71 1 "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? "C3'" B DC 23 ? ? 123.46 115.70 7.76 1.20 N 72 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 109.82 119.60 -9.78 1.50 N 73 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 112.84 108.30 4.54 0.30 N 74 1 C5 B DG 24 ? ? C6 B DG 24 ? ? N1 B DG 24 ? ? 114.75 111.50 3.25 0.50 N 75 1 N1 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 115.19 119.90 -4.71 0.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'MINOR GROOVE BINDER' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 HT O1 O N N 147 HT C1 C Y N 148 HT C4 C Y N 149 HT C2 C Y N 150 HT C3 C Y N 151 HT C6 C Y N 152 HT C5 C Y N 153 HT C7 C Y N 154 HT N1 N Y N 155 HT C8 C Y N 156 HT C9 C Y N 157 HT N2 N Y N 158 HT C10 C Y N 159 HT C11 C Y N 160 HT C12 C Y N 161 HT C13 C Y N 162 HT C14 C Y N 163 HT N3 N Y N 164 HT C15 C Y N 165 HT C16 C Y N 166 HT N4 N Y N 167 HT C17 C Y N 168 HT C18 C Y N 169 HT C19 C Y N 170 HT C20 C Y N 171 HT N5 N N N 172 HT C21 C N N 173 HT C22 C N N 174 HT N6 N N N 175 HT C23 C N N 176 HT C24 C N N 177 HT C25 C N N 178 HT HO1 H N N 179 HT H2 H N N 180 HT H3 H N N 181 HT H5 H N N 182 HT H6 H N N 183 HT HN1 H N N 184 HT H10 H N N 185 HT H11 H N N 186 HT H13 H N N 187 HT HN3 H N N 188 HT H17 H N N 189 HT H18 H N N 190 HT H20 H N N 191 HT H211 H N N 192 HT H212 H N N 193 HT H221 H N N 194 HT H222 H N N 195 HT H231 H N N 196 HT H232 H N N 197 HT H241 H N N 198 HT H242 H N N 199 HT H253 H N N 200 HT H252 H N N 201 HT H251 H N N 202 MG MG MG N N 203 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 HT O1 C1 sing N N 152 HT O1 HO1 sing N N 153 HT C1 C2 doub Y N 154 HT C1 C6 sing Y N 155 HT C2 C3 sing Y N 156 HT C2 H2 sing N N 157 HT C3 C4 doub Y N 158 HT C3 H3 sing N N 159 HT C4 C5 sing Y N 160 HT C4 C7 sing Y N 161 HT C5 C6 doub Y N 162 HT C5 H5 sing N N 163 HT C6 H6 sing N N 164 HT C7 N1 sing Y N 165 HT C7 N2 doub Y N 166 HT N1 C8 sing Y N 167 HT N1 HN1 sing N N 168 HT C8 C9 doub Y N 169 HT C8 C13 sing Y N 170 HT C9 N2 sing Y N 171 HT C9 C10 sing Y N 172 HT C10 C11 doub Y N 173 HT C10 H10 sing N N 174 HT C11 C12 sing Y N 175 HT C11 H11 sing N N 176 HT C12 C13 doub Y N 177 HT C12 C14 sing Y N 178 HT C13 H13 sing N N 179 HT C14 N3 sing Y N 180 HT C14 N4 doub Y N 181 HT N3 C15 sing Y N 182 HT N3 HN3 sing N N 183 HT C15 C16 doub Y N 184 HT C15 C20 sing Y N 185 HT C16 N4 sing Y N 186 HT C16 C17 sing Y N 187 HT C17 C18 doub Y N 188 HT C17 H17 sing N N 189 HT C18 C19 sing Y N 190 HT C18 H18 sing N N 191 HT C19 C20 doub Y N 192 HT C19 N5 sing N N 193 HT C20 H20 sing N N 194 HT N5 C21 sing N N 195 HT N5 C24 sing N N 196 HT C21 C22 sing N N 197 HT C21 H211 sing N N 198 HT C21 H212 sing N N 199 HT C22 N6 sing N N 200 HT C22 H221 sing N N 201 HT C22 H222 sing N N 202 HT N6 C23 sing N N 203 HT N6 C25 sing N N 204 HT C23 C24 sing N N 205 HT C23 H231 sing N N 206 HT C23 H232 sing N N 207 HT C24 H241 sing N N 208 HT C24 H242 sing N N 209 HT C25 H253 sing N N 210 HT C25 H252 sing N N 211 HT C25 H251 sing N N 212 # _ndb_struct_conf_na.entry_id 1D43 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.480 -0.290 0.349 1.607 -17.157 2.239 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.684 -0.115 0.355 -2.300 -16.709 6.883 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.271 -0.015 0.142 -3.387 -7.577 0.145 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.388 -0.012 0.195 17.386 -5.842 -0.735 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.279 -0.260 -0.122 8.137 -23.627 6.455 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.157 -0.139 0.251 6.362 -20.001 3.985 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 0.404 -0.233 -0.090 -3.931 -27.389 4.345 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.471 -0.260 -0.068 -6.690 -15.870 3.668 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.524 -0.113 -0.077 -8.606 -9.588 -5.884 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 0.136 -0.417 0.334 13.882 5.399 -2.951 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.182 -0.352 0.167 7.913 -26.109 -9.717 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.390 -0.424 -0.058 10.868 10.351 -3.095 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.017 0.238 3.380 -0.078 8.209 28.551 -1.339 -0.050 3.318 16.226 0.155 29.684 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.459 0.809 3.319 5.823 -7.160 45.314 1.646 -0.085 3.196 -9.181 -7.467 46.195 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 0.231 0.689 2.964 2.840 10.220 24.221 -1.091 0.216 3.010 22.998 -6.390 26.410 3 AA_DC3DG4:DC21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 0.071 0.351 3.484 3.377 2.418 41.811 0.222 0.276 3.494 3.378 -4.717 42.007 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.078 -0.423 3.114 -4.648 5.929 37.017 -1.377 -0.446 3.001 9.222 7.229 37.750 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.070 -0.429 3.494 3.657 2.545 34.376 -1.137 0.480 3.443 4.284 -6.155 34.655 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.056 -0.095 3.265 0.848 1.400 32.282 -0.417 0.249 3.256 2.516 -1.524 32.322 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.070 0.581 3.494 0.662 4.457 40.527 0.304 0.179 3.534 6.410 -0.952 40.767 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.119 1.608 2.964 -4.646 3.779 26.516 2.532 -1.350 3.094 8.108 9.969 27.172 9 AA_DC9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.064 0.884 3.570 -2.140 -11.236 40.976 2.437 1.237 3.277 -15.686 2.988 42.477 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 1.345 0.940 3.645 5.095 -9.376 37.067 2.713 -1.339 3.464 -14.387 -7.818 38.521 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1D43 _atom_sites.fract_transf_matrix[1][1] 0.041754 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025648 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015342 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_