data_1D49 # _entry.id 1D49 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D49 pdb_00001d49 10.2210/pdb1d49/pdb RCSB BDJ031 ? ? WWPDB D_1000172653 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 14 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 15 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 16 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 23 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D49 _pdbx_database_status.recvd_initial_deposition_date 1991-09-17 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Quintana, J.R.' 1 'Grzeskowiak, K.' 2 'Yanagi, K.' 3 'Dickerson, R.E.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G.' J.Mol.Biol. 225 379 395 1992 JMOBAK UK 0022-2836 0070 ? 1593626 '10.1016/0022-2836(92)90928-D' 1 'The Structure of B-Helical C-G-A-T-C-G-A-T-C-G and Comparison with C-C-A-A-C-G-T-T-G-G' J.Biol.Chem. 266 8861 8883 1991 JBCHA3 US 0021-9258 0071 ? ? ? 2 'Analysis of Local Helix Geometry in Three B-DNA Decamers and Eight Dodecamers' J.Mol.Biol. 217 201 214 1991 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Quintana, J.R.' 1 ? primary 'Grzeskowiak, K.' 2 ? primary 'Yanagi, K.' 3 ? primary 'Dickerson, R.E.' 4 ? 1 'Grzeskowiak, K.' 5 ? 1 'Yanagi, K.' 6 ? 1 'Prive, G.G.' 7 ? 1 'Dickerson, R.E.' 8 ? 2 'Yanagi, K.' 9 ? 2 'Prive, G.G.' 10 ? 2 'Dickerson, R.E.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*AP*TP*TP*AP*AP*TP*CP*G)-3') ; 3044.017 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 114 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DT)(DA)(DA)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGATTAATCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DT n 1 6 DA n 1 7 DA n 1 8 DT n 1 9 DC n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DG 2 12 12 DG G B . n B 1 3 DA 3 13 13 DA A B . n B 1 4 DT 4 14 14 DT T B . n B 1 5 DT 5 15 15 DT T B . n B 1 6 DA 6 16 16 DA A B . n B 1 7 DA 7 17 17 DA A B . n B 1 8 DT 8 18 18 DT T B . n B 1 9 DC 9 19 19 DC C B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 21 21 MG MO6 B . D 3 HOH 1 23 23 HOH HOH A . D 3 HOH 2 24 24 HOH HOH A . D 3 HOH 3 28 28 HOH HOH A . D 3 HOH 4 29 29 HOH HOH A . D 3 HOH 5 30 30 HOH HOH A . D 3 HOH 6 31 31 HOH HOH A . D 3 HOH 7 36 36 HOH HOH A . D 3 HOH 8 37 37 HOH HOH A . D 3 HOH 9 39 39 HOH HOH A . D 3 HOH 10 40 40 HOH HOH A . D 3 HOH 11 41 41 HOH HOH A . D 3 HOH 12 42 42 HOH HOH A . D 3 HOH 13 43 43 HOH HOH A . D 3 HOH 14 44 44 HOH HOH A . D 3 HOH 15 52 52 HOH HOH A . D 3 HOH 16 53 53 HOH HOH A . D 3 HOH 17 54 54 HOH HOH A . D 3 HOH 18 55 55 HOH HOH A . D 3 HOH 19 56 56 HOH HOH A . D 3 HOH 20 57 57 HOH HOH A . D 3 HOH 21 58 58 HOH HOH A . D 3 HOH 22 59 59 HOH HOH A . D 3 HOH 23 60 60 HOH HOH A . D 3 HOH 24 61 61 HOH HOH A . D 3 HOH 25 62 62 HOH HOH A . D 3 HOH 26 64 64 HOH HOH A . D 3 HOH 27 65 65 HOH HOH A . D 3 HOH 28 66 66 HOH HOH A . D 3 HOH 29 90 90 HOH HOH A . D 3 HOH 30 91 91 HOH HOH A . D 3 HOH 31 92 92 HOH HOH A . D 3 HOH 32 98 98 HOH HOH A . D 3 HOH 33 102 102 HOH HOH A . D 3 HOH 34 104 104 HOH HOH A . D 3 HOH 35 107 107 HOH HOH A . D 3 HOH 36 108 108 HOH HOH A . D 3 HOH 37 109 109 HOH HOH A . D 3 HOH 38 110 110 HOH HOH A . D 3 HOH 39 111 111 HOH HOH A . D 3 HOH 40 112 112 HOH HOH A . D 3 HOH 41 113 113 HOH HOH A . D 3 HOH 42 117 117 HOH HOH A . D 3 HOH 43 118 118 HOH HOH A . D 3 HOH 44 124 124 HOH HOH A . D 3 HOH 45 126 126 HOH HOH A . D 3 HOH 46 129 129 HOH HOH A . D 3 HOH 47 131 21 HOH MO6 A . D 3 HOH 48 132 21 HOH MO6 A . D 3 HOH 49 133 21 HOH MO6 A . D 3 HOH 50 134 21 HOH MO6 A . D 3 HOH 51 135 21 HOH MO6 A . E 3 HOH 1 22 22 HOH HOH B . E 3 HOH 2 25 25 HOH HOH B . E 3 HOH 3 26 26 HOH HOH B . E 3 HOH 4 27 27 HOH HOH B . E 3 HOH 5 32 32 HOH HOH B . E 3 HOH 6 33 33 HOH HOH B . E 3 HOH 7 34 34 HOH HOH B . E 3 HOH 8 35 35 HOH HOH B . E 3 HOH 9 38 38 HOH HOH B . E 3 HOH 10 45 45 HOH HOH B . E 3 HOH 11 46 46 HOH HOH B . E 3 HOH 12 47 47 HOH HOH B . E 3 HOH 13 48 48 HOH HOH B . E 3 HOH 14 49 49 HOH HOH B . E 3 HOH 15 50 50 HOH HOH B . E 3 HOH 16 51 51 HOH HOH B . E 3 HOH 17 63 63 HOH HOH B . E 3 HOH 18 67 67 HOH HOH B . E 3 HOH 19 68 68 HOH HOH B . E 3 HOH 20 69 69 HOH HOH B . E 3 HOH 21 70 70 HOH HOH B . E 3 HOH 22 71 71 HOH HOH B . E 3 HOH 23 72 72 HOH HOH B . E 3 HOH 24 73 73 HOH HOH B . E 3 HOH 25 74 74 HOH HOH B . E 3 HOH 26 75 75 HOH HOH B . E 3 HOH 27 76 76 HOH HOH B . E 3 HOH 28 77 77 HOH HOH B . E 3 HOH 29 78 78 HOH HOH B . E 3 HOH 30 79 79 HOH HOH B . E 3 HOH 31 80 80 HOH HOH B . E 3 HOH 32 81 81 HOH HOH B . E 3 HOH 33 82 82 HOH HOH B . E 3 HOH 34 83 83 HOH HOH B . E 3 HOH 35 84 84 HOH HOH B . E 3 HOH 36 85 85 HOH HOH B . E 3 HOH 37 86 86 HOH HOH B . E 3 HOH 38 87 87 HOH HOH B . E 3 HOH 39 88 88 HOH HOH B . E 3 HOH 40 89 89 HOH HOH B . E 3 HOH 41 93 93 HOH HOH B . E 3 HOH 42 94 94 HOH HOH B . E 3 HOH 43 95 95 HOH HOH B . E 3 HOH 44 96 96 HOH HOH B . E 3 HOH 45 97 97 HOH HOH B . E 3 HOH 46 99 99 HOH HOH B . E 3 HOH 47 100 100 HOH HOH B . E 3 HOH 48 101 101 HOH HOH B . E 3 HOH 49 103 103 HOH HOH B . E 3 HOH 50 105 105 HOH HOH B . E 3 HOH 51 106 106 HOH HOH B . E 3 HOH 52 114 114 HOH HOH B . E 3 HOH 53 115 115 HOH HOH B . E 3 HOH 54 116 116 HOH HOH B . E 3 HOH 55 119 119 HOH HOH B . E 3 HOH 56 120 120 HOH HOH B . E 3 HOH 57 121 121 HOH HOH B . E 3 HOH 58 122 122 HOH HOH B . E 3 HOH 59 123 123 HOH HOH B . E 3 HOH 60 125 125 HOH HOH B . E 3 HOH 61 127 127 HOH HOH B . E 3 HOH 62 128 128 HOH HOH B . E 3 HOH 63 130 21 HOH MO6 B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D49 _cell.length_a 38.600 _cell.length_b 39.100 _cell.length_c 33.070 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D49 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1D49 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 39.99 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.90 _exptl_crystal_grow.pdbx_details 'pH 6.90, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'MG ACETATE' ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 273.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D49 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low 8.000 _reflns.d_resolution_high 1.500 _reflns.number_obs 3793 _reflns.number_all 7763 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D49 _refine.ls_number_reflns_obs 3793 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1570000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 108 _refine_hist.number_atoms_total 519 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 8.000 # _database_PDB_matrix.entry_id 1D49 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D49 _struct.title 'THE STRUCTURE OF A B-DNA DECAMER WITH A CENTRAL T-A STEP: C-G-A-T-T-A-A-T-C-G' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D49 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D49 _struct_ref.pdbx_db_accession 1D49 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D49 A 1 ? 10 ? 1D49 1 ? 10 ? 1 10 2 1 1D49 B 1 ? 10 ? 1D49 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 131 B MG 21 1_555 ? ? ? ? ? ? ? 2.017 ? ? metalc2 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 132 B MG 21 1_555 ? ? ? ? ? ? ? 2.043 ? ? metalc3 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 133 B MG 21 1_555 ? ? ? ? ? ? ? 1.954 ? ? metalc4 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 134 B MG 21 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc5 metalc ? ? D HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 135 B MG 21 1_555 ? ? ? ? ? ? ? 1.924 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? B MG 21 B HOH 130 1_555 ? ? ? ? ? ? ? 2.096 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 7 N1 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 7 N6 ? ? A DT 4 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 5 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 131 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 132 ? 1_555 90.3 ? 2 O ? D HOH . ? A HOH 131 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 133 ? 1_555 90.8 ? 3 O ? D HOH . ? A HOH 132 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 133 ? 1_555 168.5 ? 4 O ? D HOH . ? A HOH 131 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 134 ? 1_555 90.7 ? 5 O ? D HOH . ? A HOH 132 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 134 ? 1_555 80.3 ? 6 O ? D HOH . ? A HOH 133 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 134 ? 1_555 88.2 ? 7 O ? D HOH . ? A HOH 131 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 135 ? 1_555 91.7 ? 8 O ? D HOH . ? A HOH 132 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 135 ? 1_555 90.1 ? 9 O ? D HOH . ? A HOH 133 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 135 ? 1_555 101.3 ? 10 O ? D HOH . ? A HOH 134 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? D HOH . ? A HOH 135 ? 1_555 170.1 ? 11 O ? D HOH . ? A HOH 131 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? E HOH . ? B HOH 130 ? 1_555 176.7 ? 12 O ? D HOH . ? A HOH 132 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? E HOH . ? B HOH 130 ? 1_555 87.1 ? 13 O ? D HOH . ? A HOH 133 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? E HOH . ? B HOH 130 ? 1_555 91.3 ? 14 O ? D HOH . ? A HOH 134 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? E HOH . ? B HOH 130 ? 1_555 86.8 ? 15 O ? D HOH . ? A HOH 135 ? 1_555 MG ? C MG . ? B MG 21 ? 1_555 O ? E HOH . ? B HOH 130 ? 1_555 90.3 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 21 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG B 21' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 131 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 132 . ? 1_555 ? 3 AC1 6 HOH D . ? HOH A 133 . ? 1_555 ? 4 AC1 6 HOH D . ? HOH A 134 . ? 1_555 ? 5 AC1 6 HOH D . ? HOH A 135 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH B 130 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 52 ? ? O A HOH 53 ? ? 2.03 2 1 "O5'" A DA 3 ? ? O A HOH 52 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 93 ? ? 1_555 O B HOH 94 ? ? 1_554 2.00 2 1 "C5'" A DC 1 ? ? 1_555 "O3'" A DG 10 ? ? 1_554 2.06 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? 1.511 1.420 0.091 0.011 N 2 1 "C2'" B DA 13 ? ? "C1'" B DA 13 ? ? 1.450 1.518 -0.068 0.010 N 3 1 "C2'" B DT 14 ? ? "C1'" B DT 14 ? ? 1.452 1.518 -0.066 0.010 N 4 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? 1.510 1.420 0.090 0.011 N 5 1 "C2'" B DT 15 ? ? "C1'" B DT 15 ? ? 1.452 1.518 -0.066 0.010 N 6 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? 1.501 1.420 0.081 0.011 N 7 1 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? 1.466 1.516 -0.050 0.008 N 8 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? 1.506 1.420 0.086 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.38 108.30 3.08 0.30 N 2 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 122.99 119.90 3.09 0.50 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 119.31 121.90 -2.59 0.40 N 4 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 132.16 119.70 12.46 1.20 Y 5 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 110.42 119.60 -9.18 1.50 N 6 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.65 108.30 3.35 0.30 N 7 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 127.65 123.90 3.75 0.60 N 8 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 108.71 111.90 -3.19 0.50 N 9 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DA 3 ? ? 133.86 119.70 14.16 1.20 Y 10 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 126.19 129.30 -3.11 0.50 N 11 1 "C3'" A DA 3 ? ? "O3'" A DA 3 ? ? P A DT 4 ? ? 127.86 119.70 8.16 1.20 Y 12 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 122.32 127.20 -4.88 0.60 N 13 1 "O5'" A DT 5 ? ? P A DT 5 ? ? OP1 A DT 5 ? ? 122.36 110.70 11.66 1.20 N 14 1 "O5'" A DT 5 ? ? "C5'" A DT 5 ? ? "C4'" A DT 5 ? ? 102.56 109.40 -6.84 0.80 N 15 1 "O4'" A DT 5 ? ? "C1'" A DT 5 ? ? N1 A DT 5 ? ? 101.68 108.00 -6.32 0.70 N 16 1 C2 A DT 5 ? ? N3 A DT 5 ? ? C4 A DT 5 ? ? 123.25 127.20 -3.95 0.60 N 17 1 N3 A DT 5 ? ? C4 A DT 5 ? ? C5 A DT 5 ? ? 119.15 115.20 3.95 0.60 N 18 1 C5 A DT 5 ? ? C4 A DT 5 ? ? O4 A DT 5 ? ? 120.30 124.90 -4.60 0.70 N 19 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.78 108.30 4.48 0.30 N 20 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 123.22 118.60 4.62 0.60 N 21 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 125.76 129.30 -3.54 0.50 N 22 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 114.58 117.70 -3.12 0.50 N 23 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.50 108.30 2.20 0.30 N 24 1 C6 A DA 7 ? ? N1 A DA 7 ? ? C2 A DA 7 ? ? 125.39 118.60 6.79 0.60 N 25 1 N1 A DA 7 ? ? C2 A DA 7 ? ? N3 A DA 7 ? ? 123.54 129.30 -5.76 0.50 N 26 1 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 114.28 117.70 -3.42 0.50 N 27 1 "C3'" A DA 7 ? ? "O3'" A DA 7 ? ? P A DT 8 ? ? 129.56 119.70 9.86 1.20 Y 28 1 "O3'" A DA 7 ? ? P A DT 8 ? ? "O5'" A DT 8 ? ? 115.85 104.00 11.85 1.90 Y 29 1 "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? 103.21 109.40 -6.19 0.80 N 30 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 121.98 127.20 -5.22 0.60 N 31 1 N3 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 114.66 119.90 -5.24 0.60 N 32 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DC 9 ? ? 138.28 119.70 18.58 1.20 Y 33 1 N3 A DC 9 ? ? C4 A DC 9 ? ? C5 A DC 9 ? ? 119.44 121.90 -2.46 0.40 N 34 1 N1 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 123.26 118.90 4.36 0.60 N 35 1 P A DG 10 ? ? "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? 109.22 120.90 -11.68 1.60 N 36 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.93 108.30 2.63 0.30 N 37 1 "C3'" B DC 11 ? ? "C2'" B DC 11 ? ? "C1'" B DC 11 ? ? 97.08 102.40 -5.32 0.80 N 38 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 114.86 108.30 6.56 0.30 N 39 1 C2 B DC 11 ? ? N3 B DC 11 ? ? C4 B DC 11 ? ? 123.35 119.90 3.45 0.50 N 40 1 N3 B DC 11 ? ? C4 B DC 11 ? ? C5 B DC 11 ? ? 118.87 121.90 -3.03 0.40 N 41 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.20 108.30 1.90 0.30 N 42 1 "C3'" B DG 12 ? ? "O3'" B DG 12 ? ? P B DA 13 ? ? 132.00 119.70 12.30 1.20 Y 43 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 102.57 108.00 -5.43 0.70 N 44 1 C6 B DA 13 ? ? N1 B DA 13 ? ? C2 B DA 13 ? ? 123.86 118.60 5.26 0.60 N 45 1 N1 B DA 13 ? ? C2 B DA 13 ? ? N3 B DA 13 ? ? 126.12 129.30 -3.18 0.50 N 46 1 C5 B DA 13 ? ? C6 B DA 13 ? ? N1 B DA 13 ? ? 113.84 117.70 -3.86 0.50 N 47 1 "O5'" B DT 14 ? ? "C5'" B DT 14 ? ? "C4'" B DT 14 ? ? 102.35 109.40 -7.05 0.80 N 48 1 "O4'" B DT 14 ? ? "C1'" B DT 14 ? ? N1 B DT 14 ? ? 103.62 108.00 -4.38 0.70 N 49 1 N1 B DT 14 ? ? C2 B DT 14 ? ? N3 B DT 14 ? ? 118.59 114.60 3.99 0.60 N 50 1 C2 B DT 14 ? ? N3 B DT 14 ? ? C4 B DT 14 ? ? 121.36 127.20 -5.84 0.60 N 51 1 N3 B DT 14 ? ? C4 B DT 14 ? ? C5 B DT 14 ? ? 119.71 115.20 4.51 0.60 N 52 1 "O5'" B DT 15 ? ? "C5'" B DT 15 ? ? "C4'" B DT 15 ? ? 103.71 109.40 -5.69 0.80 N 53 1 "O4'" B DT 15 ? ? "C1'" B DT 15 ? ? N1 B DT 15 ? ? 102.36 108.00 -5.64 0.70 N 54 1 N1 B DT 15 ? ? C2 B DT 15 ? ? N3 B DT 15 ? ? 118.23 114.60 3.63 0.60 N 55 1 C2 B DT 15 ? ? N3 B DT 15 ? ? C4 B DT 15 ? ? 120.95 127.20 -6.25 0.60 N 56 1 N3 B DT 15 ? ? C4 B DT 15 ? ? C5 B DT 15 ? ? 120.02 115.20 4.82 0.60 N 57 1 C4 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 122.78 119.00 3.78 0.60 N 58 1 C6 B DT 15 ? ? C5 B DT 15 ? ? C7 B DT 15 ? ? 119.06 122.90 -3.84 0.60 N 59 1 "O4'" B DA 16 ? ? "C1'" B DA 16 ? ? N9 B DA 16 ? ? 110.22 108.30 1.92 0.30 N 60 1 N1 B DA 16 ? ? C6 B DA 16 ? ? N6 B DA 16 ? ? 124.39 118.60 5.79 0.60 N 61 1 "C3'" B DA 16 ? ? "O3'" B DA 16 ? ? P B DA 17 ? ? 128.04 119.70 8.34 1.20 Y 62 1 C6 B DA 17 ? ? N1 B DA 17 ? ? C2 B DA 17 ? ? 124.07 118.60 5.47 0.60 N 63 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 124.02 129.30 -5.28 0.50 N 64 1 "C3'" B DA 17 ? ? "O3'" B DA 17 ? ? P B DT 18 ? ? 111.23 119.70 -8.47 1.20 Y 65 1 "O3'" B DA 17 ? ? P B DT 18 ? ? OP2 B DT 18 ? ? 119.05 110.50 8.55 1.10 Y 66 1 "O5'" B DT 18 ? ? "C5'" B DT 18 ? ? "C4'" B DT 18 ? ? 103.27 109.40 -6.13 0.80 N 67 1 P B DT 18 ? ? "O5'" B DT 18 ? ? "C5'" B DT 18 ? ? 108.51 120.90 -12.39 1.60 N 68 1 N1 B DT 18 ? ? C2 B DT 18 ? ? N3 B DT 18 ? ? 118.59 114.60 3.99 0.60 N 69 1 C2 B DT 18 ? ? N3 B DT 18 ? ? C4 B DT 18 ? ? 120.41 127.20 -6.79 0.60 N 70 1 N3 B DT 18 ? ? C4 B DT 18 ? ? C5 B DT 18 ? ? 119.43 115.20 4.23 0.60 N 71 1 N3 B DT 18 ? ? C4 B DT 18 ? ? O4 B DT 18 ? ? 115.62 119.90 -4.28 0.60 N 72 1 "O5'" B DC 19 ? ? "C5'" B DC 19 ? ? "C4'" B DC 19 ? ? 101.79 109.40 -7.61 0.80 N 73 1 P B DC 19 ? ? "O5'" B DC 19 ? ? "C5'" B DC 19 ? ? 106.61 120.90 -14.29 1.60 N 74 1 "O4'" B DC 19 ? ? "C1'" B DC 19 ? ? N1 B DC 19 ? ? 102.15 108.00 -5.85 0.70 N 75 1 C2 B DC 19 ? ? N3 B DC 19 ? ? C4 B DC 19 ? ? 123.19 119.90 3.29 0.50 N 76 1 N1 B DC 19 ? ? C2 B DC 19 ? ? O2 B DC 19 ? ? 122.91 118.90 4.01 0.60 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D49 'double helix' 1D49 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 10 1_555 -0.204 -0.345 0.073 5.081 -1.734 -3.331 1 A_DC1:DG20_B A 1 ? B 20 ? 19 1 1 A DG 2 1_555 B DC 9 1_555 0.012 -0.242 0.582 14.271 -13.390 -3.757 2 A_DG2:DC19_B A 2 ? B 19 ? 19 1 1 A DA 3 1_555 B DT 8 1_555 0.156 -0.188 0.055 0.922 -12.056 -1.353 3 A_DA3:DT18_B A 3 ? B 18 ? 20 1 1 A DT 4 1_555 B DA 7 1_555 -0.098 -0.272 0.311 2.552 -20.029 2.690 4 A_DT4:DA17_B A 4 ? B 17 ? 20 1 1 A DT 5 1_555 B DA 6 1_555 -0.477 -0.187 0.141 -1.356 -11.732 6.560 5 A_DT5:DA16_B A 5 ? B 16 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.267 -0.078 -0.008 9.011 -10.700 5.662 6 A_DA6:DT15_B A 6 ? B 15 ? 20 1 1 A DA 7 1_555 B DT 4 1_555 0.217 -0.030 0.032 -0.864 -14.327 -1.121 7 A_DA7:DT14_B A 7 ? B 14 ? 20 1 1 A DT 8 1_555 B DA 3 1_555 -0.089 -0.009 0.018 1.431 -14.614 6.352 8 A_DT8:DA13_B A 8 ? B 13 ? 20 1 1 A DC 9 1_555 B DG 2 1_555 0.172 -0.233 0.146 -6.072 -17.053 -1.879 9 A_DC9:DG12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 0.251 -0.125 0.253 1.897 2.745 -1.155 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 10 1_555 A DG 2 1_555 B DC 9 1_555 -0.288 0.850 3.224 -2.338 -3.786 39.994 1.654 0.160 3.145 -5.514 3.405 40.231 1 AA_DC1DG2:DC19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A DG 2 1_555 B DC 9 1_555 A DA 3 1_555 B DT 8 1_555 0.304 -0.484 3.542 3.512 -0.401 41.815 -0.631 -0.027 3.559 -0.561 -4.910 41.958 2 AA_DG2DA3:DT18DC19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DA 3 1_555 B DT 8 1_555 A DT 4 1_555 B DA 7 1_555 0.373 -0.714 3.213 -3.344 0.973 34.017 -1.364 -1.148 3.142 1.657 5.697 34.190 3 AA_DA3DT4:DA17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DT 4 1_555 B DA 7 1_555 A DT 5 1_555 B DA 6 1_555 0.163 -0.225 3.279 2.124 -3.931 35.174 0.212 0.046 3.288 -6.473 -3.498 35.447 4 AA_DT4DT5:DA16DA17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.039 0.799 3.100 2.092 7.758 34.205 0.193 0.370 3.192 12.969 -3.498 35.109 5 AA_DT5DA6:DT15DA16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A DA 6 1_555 B DT 5 1_555 A DA 7 1_555 B DT 4 1_555 -0.783 0.496 3.487 -3.857 -4.017 38.186 1.282 0.676 3.479 -6.100 5.857 38.575 6 AA_DA6DA7:DT14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DA 7 1_555 B DT 4 1_555 A DT 8 1_555 B DA 3 1_555 0.322 -0.448 3.198 2.250 -3.226 33.973 -0.259 -0.197 3.240 -5.497 -3.835 34.193 7 AA_DA7DT8:DA13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DT 8 1_555 B DA 3 1_555 A DC 9 1_555 B DG 2 1_555 -0.110 0.087 3.427 -0.263 -0.844 42.020 0.212 0.125 3.425 -1.177 0.367 42.029 8 AA_DT8DC9:DG12DA13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DC 9 1_555 B DG 2 1_555 A DG 10 1_555 B DC 1 1_555 0.858 0.960 3.248 0.003 -1.337 37.543 1.663 -1.331 3.214 -2.077 -0.004 37.566 9 AA_DC9DG10:DC11DG12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _atom_sites.entry_id 1D49 _atom_sites.fract_transf_matrix[1][1] 0.025907 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025253 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.030239 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_