HEADER MEMBRANE PROTEIN 05-OCT-99 1D4Q OBSLTE 21-JUN-00 1D4Q 1C8P TITLE NMR STRUCTURE OF THE LIGAND BINDING DOMAIN OF THE COMMON TITLE 2 BETA-CHAIN IN THE GM-CSF, IL-3 AND IL-5 RECEPTORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOKINE RECEPTOR COMMON BETA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN 4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 CELL: HEMOPOIETIC CELLS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PEC611 KEYWDS BETA SANDWICH, CYTOKINE RECEPTOR, FN3 DOMAIN EXPDTA NMR, 20 STRUCTURES AUTHOR T.D.MULHERN,R.J.D'ANDREA,C.GAUNT,L.VANDELEUR,M.A.VADAS, AUTHOR 2 A.F.LOPEZ,G.W.BOOKER,C.J.BAGLEY REVDAT 2 21-JUN-00 1D4Q 1 OBSLTE REVDAT 1 12-MAY-00 1D4Q 0 JRNL AUTH T.D.MULHERN,A.F.LOPEZ,R.J.D'ANDREA,C.GAUNT, JRNL AUTH 2 L.VANDELEUR,M.A.VADAS,G.W.BOOKER,C.J.BAGLEY JRNL TITL THE SOLUTION STRUCTURE OF THE CYTOKINE-BINDING JRNL TITL 2 DOMAIN OF THE COMMON CHAIN OF THE RECEPTORS FOR JRNL TITL 3 GRANULOCYTE-MACROPHAGE COLONY-STIMULATING FACTOR, JRNL TITL 4 INTERLEUKIN-3 AND INTERLEUKIN-5 JRNL REF J.MOL.BIOL. V. 297 989 2000 JRNL REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.D.MULHERN,C.J.BAGLEY,C.GAUNT,A.F.LOPEZ,M.A.VADAS, REMARK 1 AUTH 2 R.J.D'ANDREA,G.W.BOOKER REMARK 1 TITL 1H AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR DOMAIN 4 REMARK 1 TITL 2 OF THE COMMON BETA-CHAIN OF THE IL-3, IL-5 AND REMARK 1 TITL 3 GM-CSF RECEPTORS REMARK 1 REF J.BIOMOL.NMR V. 14 281 1999 REMARK 1 REFN ASTM JBNME9 NE ISSN 0925-2738 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON 1500 REMARK 3 UNAMBIGUOUS NOE-DERIVED DISTANCE RESTRAINTS, 1034 AMBIGUOUS REMARK 3 NOE-DERIVED DISTANCE RESTRAINTS, 42 DIHEDRAL ANGLE RESTRAINTS REMARK 3 AND 30 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. THE ARIA REMARK 3 METHOD OF NILGES ET AL. (1997) WAS USED REMARK 4 REMARK 4 1D4Q COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-1999. REMARK 100 THE RCSB ID CODE IS RCSB009790. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 0.06M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM D4BC U-15N; 10MM REMARK 210 PHOSPHATE BUFFER;90% H2O, 10% REMARK 210 D2O; 0.4MM D4BC U-15N; 10MM REMARK 210 PHOSPHATE BUFFER;100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 3D_15N-SEPARATED_ REMARK 210 NOESY, HMQC-J REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1B, XEASY 1.3.13, X- REMARK 210 PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 20 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS CALCULATED USING THE ARIA METHOD REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 THR A 70 C ARG A 71 N -0.050 REMARK 500 3 THR A 70 C ARG A 71 N -0.048 REMARK 500 4 THR A 70 C ARG A 71 N -0.049 REMARK 500 5 LEU A 20 CG LEU A 20 CD1 -0.048 REMARK 500 7 LYS A 42 CB LYS A 42 CG -0.051 REMARK 500 8 THR A 70 C ARG A 71 N -0.055 REMARK 500 9 LYS A 42 CB LYS A 42 CG -0.055 REMARK 500 10 THR A 70 C ARG A 71 N -0.052 REMARK 500 11 THR A 70 C ARG A 71 N -0.047 REMARK 500 12 THR A 70 C ARG A 71 N -0.049 REMARK 500 14 THR A 70 C ARG A 71 N -0.049 REMARK 500 15 THR A 70 C ARG A 71 N -0.048 REMARK 500 16 LYS A 42 CB LYS A 42 CG -0.052 REMARK 500 16 THR A 70 C ARG A 71 N -0.049 REMARK 500 17 LYS A 42 CB LYS A 42 CG -0.054 REMARK 500 18 LYS A 42 CA LYS A 42 C -0.047 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 33 N - CA - C ANGL. DEV. = -7.1 DEGREES REMARK 500 8 SER A 69 N - CA - C ANGL. DEV. = -8.6 DEGREES REMARK 500 11 THR A 70 CA - CB - CG2 ANGL. DEV. = 7.1 DEGREES REMARK 500 16 HIS A 31 N - CA - C ANGL. DEV. = -7.4 DEGREES REMARK 500 17 SER A 69 N - CA - C ANGL. DEV. = -7.1 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 83 -101.82 64.31 REMARK 500 2 MET A 4 149.69 71.85 REMARK 500 2 LYS A 26 -139.49 83.04 REMARK 500 2 TRP A 92 136.36 100.62 REMARK 500 3 ILE A 2 148.72 55.34 REMARK 500 3 ARG A 28 -80.62 68.99 REMARK 500 3 SER A 81 -97.65 59.02 REMARK 500 3 TYR A 85 -75.04 72.07 REMARK 500 4 GLN A 3 -103.19 67.88 REMARK 500 4 MET A 27 -108.20 50.70 REMARK 500 4 ARG A 28 -54.02 73.01 REMARK 500 5 MET A 27 -57.60 69.38 REMARK 500 5 SER A 81 166.40 77.46 REMARK 500 5 TYR A 85 -99.36 60.74 REMARK 500 6 ASP A 16 -48.67 73.26 REMARK 500 6 SER A 81 144.98 77.78 REMARK 500 7 MET A 27 -36.02 65.77 REMARK 500 7 THR A 83 -39.95 75.32 REMARK 500 8 GLN A 3 152.64 70.05 REMARK 500 8 MET A 4 158.78 71.00 REMARK 500 9 MET A 4 161.04 66.30 REMARK 500 10 ASN A 86 136.00 70.27 REMARK 500 11 TRP A 89 169.50 53.32 REMARK 500 13 MET A 27 -78.42 73.71 REMARK 500 13 TYR A 85 149.26 61.03 REMARK 500 13 TRP A 92 153.47 94.41 REMARK 500 13 GLU A 101 150.33 73.55 REMARK 500 14 GLN A 3 -96.49 62.87 REMARK 500 14 MET A 4 161.59 73.09 REMARK 500 15 GLU A 91 -118.03 41.84 REMARK 500 16 ASN A 86 -118.92 28.44 REMARK 500 16 GLU A 101 64.48 139.29 REMARK 500 18 LYS A 26 -76.81 68.31 REMARK 500 18 THR A 83 -57.29 73.64 REMARK 500 19 MET A 4 168.12 70.11 REMARK 500 19 SER A 81 -86.22 30.00 REMARK 500 19 ARG A 82 -137.80 95.05 REMARK 500 20 MET A 25 -57.30 73.07 REMARK 500 20 ASP A 33 132.84 75.16 REMARK 500 20 THR A 83 -63.92 72.86 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4308 RELATED DB: BMRB REMARK 900 1H AND 15N CHEMICAL SHIFT DATA DBREF 1D4Q A 1 102 UNP P32927 CYRB_HUMAN 338 438 SEQADV 1D4Q MET A 1 UNP P32927 CLONING ARTIFACT SEQRES 1 A 102 MET ILE GLN MET ALA PRO PRO SER LEU ASN VAL THR LYS SEQRES 2 A 102 ASP GLY ASP SER TYR SER LEU ARG TRP GLU THR MET LYS SEQRES 3 A 102 MET ARG TYR GLU HIS ILE ASP HIS THR PHE GLU ILE GLN SEQRES 4 A 102 TYR ARG LYS ASP THR ALA THR TRP LYS ASP SER LYS THR SEQRES 5 A 102 GLU THR LEU GLN ASN ALA HIS SER MET ALA LEU PRO ALA SEQRES 6 A 102 LEU GLU PRO SER THR ARG TYR TRP ALA ARG VAL ARG VAL SEQRES 7 A 102 ARG THR SER ARG THR GLY TYR ASN GLY ILE TRP SER GLU SEQRES 8 A 102 TRP SER GLU ALA ARG SER TRP ASP THR GLU SER HELIX 1 1 THR A 46 SER A 50 5 5 SHEET 1 A 3 SER A 8 ASP A 14 0 SHEET 2 A 3 SER A 17 GLU A 23 -1 O SER A 17 N ASP A 14 SHEET 3 A 3 SER A 60 LEU A 63 -1 O MET A 61 N LEU A 20 SHEET 1 B 4 THR A 52 GLN A 56 0 SHEET 2 B 4 THR A 35 LYS A 42 -1 N PHE A 36 O LEU A 55 SHEET 3 B 4 TYR A 72 ARG A 79 -1 O TRP A 73 N ARG A 41 SHEET 4 B 4 ARG A 96 TRP A 98 -1 O ARG A 96 N ALA A 74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1