data_1D4V # _entry.id 1D4V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1D4V RCSB RCSB009795 WWPDB D_1000009795 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D4V _pdbx_database_status.recvd_initial_deposition_date 1999-10-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mongkolsapaya, J.' 1 'Grimes, J.M.' 2 'Stuart, D.I.' 3 'Jones, E.Y.' 4 'Screaton, G.R.' 5 # _citation.id primary _citation.title 'Structure of the TRAIL-DR5 complex reveals mechanisms conferring specificity in apoptotic initiation' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 6 _citation.page_first 1048 _citation.page_last 1053 _citation.year 1999 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10542098 _citation.pdbx_database_id_DOI 10.1038/14935 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Mongkolsapaya, J.' 1 primary 'Grimes, J.M.' 2 primary 'Chen, N.' 3 primary 'Xu, X.N.' 4 primary 'Stuart, D.I.' 5 primary 'Jones, E.Y.' 6 primary 'Screaton, G.R.' 7 # _cell.entry_id 1D4V _cell.length_a 95.520 _cell.length_b 95.520 _cell.length_c 69.810 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D4V _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TNF-RELATED APOPTOSIS INDUCING LIGAND' 18921.166 1 ? ? 'SINGLE SUBUNIT' ? 2 polymer man 'DEATH RECEPTOR 5' 13143.660 1 ? ? 'EXTRACELLULAR REGION' ? 3 water nat water 18.015 154 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 TRAIL 2 DR5 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PQRVAAHITGTRGRSNTLSSPNSKNEKALGRKINSWESSRSGHSFLSNLHLRNGELVIHEKGFYYIYSQTYFRFQEEIKE NTKNDKQMVQYIYKYTSYPDPILLMKSARNSCWSKDAEYGLYSIYQGGIFELKENDRIFVSVTNEHLIDMDHEASFFGAF LVG ; ;PQRVAAHITGTRGRSNTLSSPNSKNEKALGRKINSWESSRSGHSFLSNLHLRNGELVIHEKGFYYIYSQTYFRFQEEIKE NTKNDKQMVQYIYKYTSYPDPILLMKSARNSCWSKDAEYGLYSIYQGGIFELKENDRIFVSVTNEHLIDMDHEASFFGAF LVG ; B ? 2 'polypeptide(L)' no no ;PQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREED SPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHKESGD ; ;PQQKRSSPSEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREED SPEMCRKCRTGCPRGMVKVGDCTPWSDIECVHKESGD ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ARG n 1 4 VAL n 1 5 ALA n 1 6 ALA n 1 7 HIS n 1 8 ILE n 1 9 THR n 1 10 GLY n 1 11 THR n 1 12 ARG n 1 13 GLY n 1 14 ARG n 1 15 SER n 1 16 ASN n 1 17 THR n 1 18 LEU n 1 19 SER n 1 20 SER n 1 21 PRO n 1 22 ASN n 1 23 SER n 1 24 LYS n 1 25 ASN n 1 26 GLU n 1 27 LYS n 1 28 ALA n 1 29 LEU n 1 30 GLY n 1 31 ARG n 1 32 LYS n 1 33 ILE n 1 34 ASN n 1 35 SER n 1 36 TRP n 1 37 GLU n 1 38 SER n 1 39 SER n 1 40 ARG n 1 41 SER n 1 42 GLY n 1 43 HIS n 1 44 SER n 1 45 PHE n 1 46 LEU n 1 47 SER n 1 48 ASN n 1 49 LEU n 1 50 HIS n 1 51 LEU n 1 52 ARG n 1 53 ASN n 1 54 GLY n 1 55 GLU n 1 56 LEU n 1 57 VAL n 1 58 ILE n 1 59 HIS n 1 60 GLU n 1 61 LYS n 1 62 GLY n 1 63 PHE n 1 64 TYR n 1 65 TYR n 1 66 ILE n 1 67 TYR n 1 68 SER n 1 69 GLN n 1 70 THR n 1 71 TYR n 1 72 PHE n 1 73 ARG n 1 74 PHE n 1 75 GLN n 1 76 GLU n 1 77 GLU n 1 78 ILE n 1 79 LYS n 1 80 GLU n 1 81 ASN n 1 82 THR n 1 83 LYS n 1 84 ASN n 1 85 ASP n 1 86 LYS n 1 87 GLN n 1 88 MET n 1 89 VAL n 1 90 GLN n 1 91 TYR n 1 92 ILE n 1 93 TYR n 1 94 LYS n 1 95 TYR n 1 96 THR n 1 97 SER n 1 98 TYR n 1 99 PRO n 1 100 ASP n 1 101 PRO n 1 102 ILE n 1 103 LEU n 1 104 LEU n 1 105 MET n 1 106 LYS n 1 107 SER n 1 108 ALA n 1 109 ARG n 1 110 ASN n 1 111 SER n 1 112 CYS n 1 113 TRP n 1 114 SER n 1 115 LYS n 1 116 ASP n 1 117 ALA n 1 118 GLU n 1 119 TYR n 1 120 GLY n 1 121 LEU n 1 122 TYR n 1 123 SER n 1 124 ILE n 1 125 TYR n 1 126 GLN n 1 127 GLY n 1 128 GLY n 1 129 ILE n 1 130 PHE n 1 131 GLU n 1 132 LEU n 1 133 LYS n 1 134 GLU n 1 135 ASN n 1 136 ASP n 1 137 ARG n 1 138 ILE n 1 139 PHE n 1 140 VAL n 1 141 SER n 1 142 VAL n 1 143 THR n 1 144 ASN n 1 145 GLU n 1 146 HIS n 1 147 LEU n 1 148 ILE n 1 149 ASP n 1 150 MET n 1 151 ASP n 1 152 HIS n 1 153 GLU n 1 154 ALA n 1 155 SER n 1 156 PHE n 1 157 PHE n 1 158 GLY n 1 159 ALA n 1 160 PHE n 1 161 LEU n 1 162 VAL n 1 163 GLY n 2 1 PRO n 2 2 GLN n 2 3 GLN n 2 4 LYS n 2 5 ARG n 2 6 SER n 2 7 SER n 2 8 PRO n 2 9 SER n 2 10 GLU n 2 11 GLY n 2 12 LEU n 2 13 CYS n 2 14 PRO n 2 15 PRO n 2 16 GLY n 2 17 HIS n 2 18 HIS n 2 19 ILE n 2 20 SER n 2 21 GLU n 2 22 ASP n 2 23 GLY n 2 24 ARG n 2 25 ASP n 2 26 CYS n 2 27 ILE n 2 28 SER n 2 29 CYS n 2 30 LYS n 2 31 TYR n 2 32 GLY n 2 33 GLN n 2 34 ASP n 2 35 TYR n 2 36 SER n 2 37 THR n 2 38 HIS n 2 39 TRP n 2 40 ASN n 2 41 ASP n 2 42 LEU n 2 43 LEU n 2 44 PHE n 2 45 CYS n 2 46 LEU n 2 47 ARG n 2 48 CYS n 2 49 THR n 2 50 ARG n 2 51 CYS n 2 52 ASP n 2 53 SER n 2 54 GLY n 2 55 GLU n 2 56 VAL n 2 57 GLU n 2 58 LEU n 2 59 SER n 2 60 PRO n 2 61 CYS n 2 62 THR n 2 63 THR n 2 64 THR n 2 65 ARG n 2 66 ASN n 2 67 THR n 2 68 VAL n 2 69 CYS n 2 70 GLN n 2 71 CYS n 2 72 GLU n 2 73 GLU n 2 74 GLY n 2 75 THR n 2 76 PHE n 2 77 ARG n 2 78 GLU n 2 79 GLU n 2 80 ASP n 2 81 SER n 2 82 PRO n 2 83 GLU n 2 84 MET n 2 85 CYS n 2 86 ARG n 2 87 LYS n 2 88 CYS n 2 89 ARG n 2 90 THR n 2 91 GLY n 2 92 CYS n 2 93 PRO n 2 94 ARG n 2 95 GLY n 2 96 MET n 2 97 VAL n 2 98 LYS n 2 99 VAL n 2 100 GLY n 2 101 ASP n 2 102 CYS n 2 103 THR n 2 104 PRO n 2 105 TRP n 2 106 SER n 2 107 ASP n 2 108 ILE n 2 109 GLU n 2 110 CYS n 2 111 VAL n 2 112 HIS n 2 113 LYS n 2 114 GLU n 2 115 SER n 2 116 GLY n 2 117 ASP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? PLASMID ? ? ? PET-9C ? ? 2 1 sample ? ? ? human Homo 'TRANSIENT EXPRESSION AS IG FUSION PROTEIN' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? human 'Homo sapiens' 9606 Homo ? ? ? ? ? ? ? ? ? ? '293T CELLS' ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP TNF10_HUMAN 1 P50591 ? ? ? 2 GB AF012535 2 2338420 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D4V B 1 ? 163 ? P50591 119 ? 281 ? 119 281 2 2 1D4V A 2 ? 117 ? 2338420 69 ? 184 ? 70 185 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1D4V _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_percent_sol 57.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_details '25% ETHYLENE GLYCOL, 0.1% N-OCTYL-BETA-GLUCOSIDE, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 20K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.87 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX9.6' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX9.6 _diffrn_source.pdbx_wavelength 0.87 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D4V _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 2.2 _reflns.number_obs 18104 _reflns.number_all ? _reflns.percent_possible_obs 96 _reflns.pdbx_Rmerge_I_obs 0.082 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D4V _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 18029 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15 _refine.ls_d_res_high 2.2 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.221 _refine.ls_R_factor_R_free 0.27 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 875 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2242 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 154 _refine_hist.number_atoms_total 2396 _refine_hist.d_res_high 2.2 _refine_hist.d_res_low 15 # _struct.entry_id 1D4V _struct.title 'Crystal structure of trail-DR5 complex' _struct.pdbx_descriptor 'TNF-RELATED APOPTOSIS INDUCING LIGAND' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D4V _struct_keywords.pdbx_keywords APOPTOSIS _struct_keywords.text 'LIGAND-RECEPTOR COMPLEX, TRIMERIC JELLY-ROLL, TNF-R SUPERFAMILY, APOPTOSIS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 144 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id HIS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 146 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id B _struct_conf.beg_auth_seq_id 262 _struct_conf.end_auth_comp_id HIS _struct_conf.end_auth_asym_id B _struct_conf.end_auth_seq_id 264 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? B CYS 13 SG ? ? ? 1_555 B CYS 26 SG ? ? A CYS 81 A CYS 94 1_555 ? ? ? ? ? ? ? 2.042 ? disulf2 disulf ? ? B CYS 29 SG ? ? ? 1_555 B CYS 45 SG ? ? A CYS 97 A CYS 113 1_555 ? ? ? ? ? ? ? 2.022 ? disulf3 disulf ? ? B CYS 48 SG ? ? ? 1_555 B CYS 61 SG ? ? A CYS 116 A CYS 129 1_555 ? ? ? ? ? ? ? 2.017 ? disulf4 disulf ? ? B CYS 51 SG ? ? ? 1_555 B CYS 69 SG ? ? A CYS 119 A CYS 137 1_555 ? ? ? ? ? ? ? 2.054 ? disulf5 disulf ? ? B CYS 71 SG ? ? ? 1_555 B CYS 85 SG ? ? A CYS 139 A CYS 153 1_555 ? ? ? ? ? ? ? 2.059 ? disulf6 disulf ? ? B CYS 88 SG ? ? ? 1_555 B CYS 102 SG ? ? A CYS 156 A CYS 170 1_555 ? ? ? ? ? ? ? 2.027 ? disulf7 disulf ? ? B CYS 92 SG ? ? ? 1_555 B CYS 110 SG ? ? A CYS 160 A CYS 178 1_555 ? ? ? ? ? ? ? 2.030 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? A1 ? 5 ? B ? 4 ? B1 ? 5 ? C ? 2 ? D ? 2 ? E ? 2 ? F ? 2 ? G ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A1 1 2 ? anti-parallel A1 2 3 ? anti-parallel A1 3 4 ? anti-parallel A1 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B1 1 2 ? anti-parallel B1 2 3 ? anti-parallel B1 3 4 ? anti-parallel B1 4 5 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel F 1 2 ? anti-parallel G 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 119 ? LEU A 132 ? TYR B 237 LEU B 250 A 2 GLY A 62 ? GLN A 75 ? GLY B 180 GLN B 193 A 3 ILE A 148 ? ASP A 149 ? ILE B 266 ASP B 267 A1 1 TYR A 119 ? LEU A 132 ? TYR B 237 LEU B 250 A1 2 GLY A 62 ? GLN A 75 ? GLY B 180 GLN B 193 A1 3 PHE A 156 ? VAL A 162 ? PHE B 274 VAL B 280 A1 4 ALA A 5 ? THR A 9 ? ALA B 123 THR B 127 A1 5 PHE A 45 ? SER A 47 ? PHE B 163 SER B 165 B 1 ILE A 102 ? ASN A 110 ? ILE B 220 ASN B 228 B 2 GLN A 87 ? TYR A 95 ? GLN B 205 TYR B 213 B 3 ARG A 137 ? VAL A 142 ? ARG B 255 VAL B 260 B 4 ARG A 31 ? LYS A 32 ? ARG B 149 LYS B 150 B1 1 ILE A 102 ? ASN A 110 ? ILE B 220 ASN B 228 B1 2 GLN A 87 ? TYR A 95 ? GLN B 205 TYR B 213 B1 3 ARG A 137 ? VAL A 142 ? ARG B 255 VAL B 260 B1 4 GLU A 55 ? ILE A 58 ? GLU B 173 ILE B 176 B1 5 LEU A 49 ? ARG A 52 ? LEU B 167 ARG B 170 C 1 HIS B 17 ? ILE B 19 ? HIS A 85 ILE A 87 C 2 CYS B 26 ? SER B 28 ? CYS A 94 SER A 96 D 1 ASP B 34 ? TYR B 35 ? ASP A 102 TYR A 103 D 2 LEU B 46 ? ARG B 47 ? LEU A 114 ARG A 115 E 1 GLU B 55 ? SER B 59 ? GLU A 123 SER A 127 E 2 VAL B 68 ? CYS B 71 ? VAL A 136 CYS A 139 F 1 THR B 75 ? PHE B 76 ? THR A 143 PHE A 144 F 2 ARG B 86 ? LYS B 87 ? ARG A 154 LYS A 155 G 1 VAL B 97 ? GLY B 100 ? VAL A 165 GLY A 168 G 2 GLU B 109 ? VAL B 111 ? GLU A 177 VAL A 179 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 132 ? N LEU B 250 O GLY A 62 ? O GLY B 180 A 2 3 O TYR A 71 ? O TYR B 189 N ASP A 149 ? N ASP B 267 A1 1 2 N LEU A 132 ? N LEU B 250 O GLY A 62 ? O GLY B 180 A1 2 3 O GLN A 69 ? O GLN B 187 N PHE A 156 ? N PHE B 274 A1 3 4 O ALA A 159 ? O ALA B 277 N ALA A 6 ? N ALA B 124 A1 4 5 N HIS A 7 ? N HIS B 125 O PHE A 45 ? O PHE B 163 B 1 2 O ARG A 109 ? O ARG B 227 N MET A 88 ? N MET B 206 B 2 3 O TYR A 95 ? O TYR B 213 N ARG A 137 ? N ARG B 255 B 3 4 O VAL A 142 ? O VAL B 260 N ARG A 31 ? N ARG B 149 B1 1 2 O ARG A 109 ? O ARG B 227 N MET A 88 ? N MET B 206 B1 2 3 O TYR A 95 ? O TYR B 213 N ARG A 137 ? N ARG B 255 B1 3 4 O ILE A 138 ? O ILE B 256 N LEU A 56 ? N LEU B 174 B1 4 5 N VAL A 57 ? N VAL B 175 O HIS A 50 ? O HIS B 168 C 1 2 N HIS B 18 ? N HIS A 86 O ILE B 27 ? O ILE A 95 D 1 2 O TYR B 35 ? O TYR A 103 N LEU B 46 ? N LEU A 114 E 1 2 N LEU B 58 ? N LEU A 126 O VAL B 68 ? O VAL A 136 F 1 2 O PHE B 76 ? O PHE A 144 N ARG B 86 ? N ARG A 154 G 1 2 O GLY B 100 ? O GLY A 168 N GLU B 109 ? N GLU A 177 # _database_PDB_matrix.entry_id 1D4V _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1D4V _atom_sites.fract_transf_matrix[1][1] 0.010469 _atom_sites.fract_transf_matrix[1][2] 0.006044 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012089 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014325 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 119 119 PRO PRO B . n A 1 2 GLN 2 120 120 GLN GLN B . n A 1 3 ARG 3 121 121 ARG ARG B . n A 1 4 VAL 4 122 122 VAL VAL B . n A 1 5 ALA 5 123 123 ALA ALA B . n A 1 6 ALA 6 124 124 ALA ALA B . n A 1 7 HIS 7 125 125 HIS HIS B . n A 1 8 ILE 8 126 126 ILE ILE B . n A 1 9 THR 9 127 127 THR THR B . n A 1 10 GLY 10 128 128 GLY GLY B . n A 1 11 THR 11 129 129 THR THR B . n A 1 12 ARG 12 130 130 ARG ARG B . n A 1 13 GLY 13 131 131 GLY GLY B . n A 1 14 ARG 14 132 132 ARG ARG B . n A 1 15 SER 15 133 133 SER SER B . n A 1 16 ASN 16 134 134 ASN ASN B . n A 1 17 THR 17 135 135 THR THR B . n A 1 18 LEU 18 136 136 LEU LEU B . n A 1 19 SER 19 137 137 SER SER B . n A 1 20 SER 20 138 138 SER SER B . n A 1 21 PRO 21 139 139 PRO PRO B . n A 1 22 ASN 22 140 140 ASN ASN B . n A 1 23 SER 23 141 141 SER SER B . n A 1 24 LYS 24 142 142 LYS LYS B . n A 1 25 ASN 25 143 143 ASN ASN B . n A 1 26 GLU 26 144 144 GLU GLU B . n A 1 27 LYS 27 145 145 LYS LYS B . n A 1 28 ALA 28 146 146 ALA ALA B . n A 1 29 LEU 29 147 147 LEU LEU B . n A 1 30 GLY 30 148 148 GLY GLY B . n A 1 31 ARG 31 149 149 ARG ARG B . n A 1 32 LYS 32 150 150 LYS LYS B . n A 1 33 ILE 33 151 151 ILE ILE B . n A 1 34 ASN 34 152 152 ASN ASN B . n A 1 35 SER 35 153 153 SER SER B . n A 1 36 TRP 36 154 154 TRP TRP B . n A 1 37 GLU 37 155 155 GLU GLU B . n A 1 38 SER 38 156 156 SER SER B . n A 1 39 SER 39 157 157 SER SER B . n A 1 40 ARG 40 158 158 ARG ARG B . n A 1 41 SER 41 159 159 SER SER B . n A 1 42 GLY 42 160 160 GLY GLY B . n A 1 43 HIS 43 161 161 HIS HIS B . n A 1 44 SER 44 162 162 SER SER B . n A 1 45 PHE 45 163 163 PHE PHE B . n A 1 46 LEU 46 164 164 LEU LEU B . n A 1 47 SER 47 165 165 SER SER B . n A 1 48 ASN 48 166 166 ASN ASN B . n A 1 49 LEU 49 167 167 LEU LEU B . n A 1 50 HIS 50 168 168 HIS HIS B . n A 1 51 LEU 51 169 169 LEU LEU B . n A 1 52 ARG 52 170 170 ARG ARG B . n A 1 53 ASN 53 171 171 ASN ASN B . n A 1 54 GLY 54 172 172 GLY GLY B . n A 1 55 GLU 55 173 173 GLU GLU B . n A 1 56 LEU 56 174 174 LEU LEU B . n A 1 57 VAL 57 175 175 VAL VAL B . n A 1 58 ILE 58 176 176 ILE ILE B . n A 1 59 HIS 59 177 177 HIS HIS B . n A 1 60 GLU 60 178 178 GLU GLU B . n A 1 61 LYS 61 179 179 LYS LYS B . n A 1 62 GLY 62 180 180 GLY GLY B . n A 1 63 PHE 63 181 181 PHE PHE B . n A 1 64 TYR 64 182 182 TYR TYR B . n A 1 65 TYR 65 183 183 TYR TYR B . n A 1 66 ILE 66 184 184 ILE ILE B . n A 1 67 TYR 67 185 185 TYR TYR B . n A 1 68 SER 68 186 186 SER SER B . n A 1 69 GLN 69 187 187 GLN GLN B . n A 1 70 THR 70 188 188 THR THR B . n A 1 71 TYR 71 189 189 TYR TYR B . n A 1 72 PHE 72 190 190 PHE PHE B . n A 1 73 ARG 73 191 191 ARG ARG B . n A 1 74 PHE 74 192 192 PHE PHE B . n A 1 75 GLN 75 193 193 GLN GLN B . n A 1 76 GLU 76 194 194 GLU GLU B . n A 1 77 GLU 77 195 195 GLU GLU B . n A 1 78 ILE 78 196 196 ILE ILE B . n A 1 79 LYS 79 197 197 LYS LYS B . n A 1 80 GLU 80 198 198 GLU GLU B . n A 1 81 ASN 81 199 199 ASN ASN B . n A 1 82 THR 82 200 200 THR THR B . n A 1 83 LYS 83 201 201 LYS LYS B . n A 1 84 ASN 84 202 202 ASN ASN B . n A 1 85 ASP 85 203 203 ASP ASP B . n A 1 86 LYS 86 204 204 LYS LYS B . n A 1 87 GLN 87 205 205 GLN GLN B . n A 1 88 MET 88 206 206 MET MET B . n A 1 89 VAL 89 207 207 VAL VAL B . n A 1 90 GLN 90 208 208 GLN GLN B . n A 1 91 TYR 91 209 209 TYR TYR B . n A 1 92 ILE 92 210 210 ILE ILE B . n A 1 93 TYR 93 211 211 TYR TYR B . n A 1 94 LYS 94 212 212 LYS LYS B . n A 1 95 TYR 95 213 213 TYR TYR B . n A 1 96 THR 96 214 214 THR THR B . n A 1 97 SER 97 215 215 SER SER B . n A 1 98 TYR 98 216 216 TYR TYR B . n A 1 99 PRO 99 217 217 PRO PRO B . n A 1 100 ASP 100 218 218 ASP ASP B . n A 1 101 PRO 101 219 219 PRO PRO B . n A 1 102 ILE 102 220 220 ILE ILE B . n A 1 103 LEU 103 221 221 LEU LEU B . n A 1 104 LEU 104 222 222 LEU LEU B . n A 1 105 MET 105 223 223 MET MET B . n A 1 106 LYS 106 224 224 LYS LYS B . n A 1 107 SER 107 225 225 SER SER B . n A 1 108 ALA 108 226 226 ALA ALA B . n A 1 109 ARG 109 227 227 ARG ARG B . n A 1 110 ASN 110 228 228 ASN ASN B . n A 1 111 SER 111 229 229 SER SER B . n A 1 112 CYS 112 230 230 CYS CYS B . n A 1 113 TRP 113 231 231 TRP TRP B . n A 1 114 SER 114 232 232 SER SER B . n A 1 115 LYS 115 233 233 LYS LYS B . n A 1 116 ASP 116 234 234 ASP ASP B . n A 1 117 ALA 117 235 235 ALA ALA B . n A 1 118 GLU 118 236 236 GLU GLU B . n A 1 119 TYR 119 237 237 TYR TYR B . n A 1 120 GLY 120 238 238 GLY GLY B . n A 1 121 LEU 121 239 239 LEU LEU B . n A 1 122 TYR 122 240 240 TYR TYR B . n A 1 123 SER 123 241 241 SER SER B . n A 1 124 ILE 124 242 242 ILE ILE B . n A 1 125 TYR 125 243 243 TYR TYR B . n A 1 126 GLN 126 244 244 GLN GLN B . n A 1 127 GLY 127 245 245 GLY GLY B . n A 1 128 GLY 128 246 246 GLY GLY B . n A 1 129 ILE 129 247 247 ILE ILE B . n A 1 130 PHE 130 248 248 PHE PHE B . n A 1 131 GLU 131 249 249 GLU GLU B . n A 1 132 LEU 132 250 250 LEU LEU B . n A 1 133 LYS 133 251 251 LYS LYS B . n A 1 134 GLU 134 252 252 GLU GLU B . n A 1 135 ASN 135 253 253 ASN ASN B . n A 1 136 ASP 136 254 254 ASP ASP B . n A 1 137 ARG 137 255 255 ARG ARG B . n A 1 138 ILE 138 256 256 ILE ILE B . n A 1 139 PHE 139 257 257 PHE PHE B . n A 1 140 VAL 140 258 258 VAL VAL B . n A 1 141 SER 141 259 259 SER SER B . n A 1 142 VAL 142 260 260 VAL VAL B . n A 1 143 THR 143 261 261 THR THR B . n A 1 144 ASN 144 262 262 ASN ASN B . n A 1 145 GLU 145 263 263 GLU GLU B . n A 1 146 HIS 146 264 264 HIS HIS B . n A 1 147 LEU 147 265 265 LEU LEU B . n A 1 148 ILE 148 266 266 ILE ILE B . n A 1 149 ASP 149 267 267 ASP ASP B . n A 1 150 MET 150 268 268 MET MET B . n A 1 151 ASP 151 269 269 ASP ASP B . n A 1 152 HIS 152 270 270 HIS HIS B . n A 1 153 GLU 153 271 271 GLU GLU B . n A 1 154 ALA 154 272 272 ALA ALA B . n A 1 155 SER 155 273 273 SER SER B . n A 1 156 PHE 156 274 274 PHE PHE B . n A 1 157 PHE 157 275 275 PHE PHE B . n A 1 158 GLY 158 276 276 GLY GLY B . n A 1 159 ALA 159 277 277 ALA ALA B . n A 1 160 PHE 160 278 278 PHE PHE B . n A 1 161 LEU 161 279 279 LEU LEU B . n A 1 162 VAL 162 280 280 VAL VAL B . n A 1 163 GLY 163 281 281 GLY GLY B . n B 2 1 PRO 1 69 69 PRO PRO A . n B 2 2 GLN 2 70 70 GLN GLN A . n B 2 3 GLN 3 71 71 GLN GLN A . n B 2 4 LYS 4 72 72 LYS LYS A . n B 2 5 ARG 5 73 73 ARG ARG A . n B 2 6 SER 6 74 74 SER SER A . n B 2 7 SER 7 75 75 SER SER A . n B 2 8 PRO 8 76 76 PRO PRO A . n B 2 9 SER 9 77 77 SER SER A . n B 2 10 GLU 10 78 78 GLU GLU A . n B 2 11 GLY 11 79 79 GLY GLY A . n B 2 12 LEU 12 80 80 LEU LEU A . n B 2 13 CYS 13 81 81 CYS CYS A . n B 2 14 PRO 14 82 82 PRO PRO A . n B 2 15 PRO 15 83 83 PRO PRO A . n B 2 16 GLY 16 84 84 GLY GLY A . n B 2 17 HIS 17 85 85 HIS HIS A . n B 2 18 HIS 18 86 86 HIS HIS A . n B 2 19 ILE 19 87 87 ILE ILE A . n B 2 20 SER 20 88 88 SER SER A . n B 2 21 GLU 21 89 89 GLU GLU A . n B 2 22 ASP 22 90 90 ASP ASP A . n B 2 23 GLY 23 91 91 GLY GLY A . n B 2 24 ARG 24 92 92 ARG ARG A . n B 2 25 ASP 25 93 93 ASP ASP A . n B 2 26 CYS 26 94 94 CYS CYS A . n B 2 27 ILE 27 95 95 ILE ILE A . n B 2 28 SER 28 96 96 SER SER A . n B 2 29 CYS 29 97 97 CYS CYS A . n B 2 30 LYS 30 98 98 LYS LYS A . n B 2 31 TYR 31 99 99 TYR TYR A . n B 2 32 GLY 32 100 100 GLY GLY A . n B 2 33 GLN 33 101 101 GLN GLN A . n B 2 34 ASP 34 102 102 ASP ASP A . n B 2 35 TYR 35 103 103 TYR TYR A . n B 2 36 SER 36 104 104 SER SER A . n B 2 37 THR 37 105 105 THR THR A . n B 2 38 HIS 38 106 106 HIS HIS A . n B 2 39 TRP 39 107 107 TRP TRP A . n B 2 40 ASN 40 108 108 ASN ASN A . n B 2 41 ASP 41 109 109 ASP ASP A . n B 2 42 LEU 42 110 110 LEU LEU A . n B 2 43 LEU 43 111 111 LEU LEU A . n B 2 44 PHE 44 112 112 PHE PHE A . n B 2 45 CYS 45 113 113 CYS CYS A . n B 2 46 LEU 46 114 114 LEU LEU A . n B 2 47 ARG 47 115 115 ARG ARG A . n B 2 48 CYS 48 116 116 CYS CYS A . n B 2 49 THR 49 117 117 THR THR A . n B 2 50 ARG 50 118 118 ARG ARG A . n B 2 51 CYS 51 119 119 CYS CYS A . n B 2 52 ASP 52 120 120 ASP ASP A . n B 2 53 SER 53 121 121 SER SER A . n B 2 54 GLY 54 122 122 GLY GLY A . n B 2 55 GLU 55 123 123 GLU GLU A . n B 2 56 VAL 56 124 124 VAL VAL A . n B 2 57 GLU 57 125 125 GLU GLU A . n B 2 58 LEU 58 126 126 LEU LEU A . n B 2 59 SER 59 127 127 SER SER A . n B 2 60 PRO 60 128 128 PRO PRO A . n B 2 61 CYS 61 129 129 CYS CYS A . n B 2 62 THR 62 130 130 THR THR A . n B 2 63 THR 63 131 131 THR THR A . n B 2 64 THR 64 132 132 THR THR A . n B 2 65 ARG 65 133 133 ARG ARG A . n B 2 66 ASN 66 134 134 ASN ASN A . n B 2 67 THR 67 135 135 THR THR A . n B 2 68 VAL 68 136 136 VAL VAL A . n B 2 69 CYS 69 137 137 CYS CYS A . n B 2 70 GLN 70 138 138 GLN GLN A . n B 2 71 CYS 71 139 139 CYS CYS A . n B 2 72 GLU 72 140 140 GLU GLU A . n B 2 73 GLU 73 141 141 GLU GLU A . n B 2 74 GLY 74 142 142 GLY GLY A . n B 2 75 THR 75 143 143 THR THR A . n B 2 76 PHE 76 144 144 PHE PHE A . n B 2 77 ARG 77 145 145 ARG ARG A . n B 2 78 GLU 78 146 146 GLU GLU A . n B 2 79 GLU 79 147 147 GLU GLU A . n B 2 80 ASP 80 148 148 ASP ASP A . n B 2 81 SER 81 149 149 SER SER A . n B 2 82 PRO 82 150 150 PRO PRO A . n B 2 83 GLU 83 151 151 GLU GLU A . n B 2 84 MET 84 152 152 MET MET A . n B 2 85 CYS 85 153 153 CYS CYS A . n B 2 86 ARG 86 154 154 ARG ARG A . n B 2 87 LYS 87 155 155 LYS LYS A . n B 2 88 CYS 88 156 156 CYS CYS A . n B 2 89 ARG 89 157 157 ARG ARG A . n B 2 90 THR 90 158 158 THR THR A . n B 2 91 GLY 91 159 159 GLY GLY A . n B 2 92 CYS 92 160 160 CYS CYS A . n B 2 93 PRO 93 161 161 PRO PRO A . n B 2 94 ARG 94 162 162 ARG ARG A . n B 2 95 GLY 95 163 163 GLY GLY A . n B 2 96 MET 96 164 164 MET MET A . n B 2 97 VAL 97 165 165 VAL VAL A . n B 2 98 LYS 98 166 166 LYS LYS A . n B 2 99 VAL 99 167 167 VAL VAL A . n B 2 100 GLY 100 168 168 GLY GLY A . n B 2 101 ASP 101 169 169 ASP ASP A . n B 2 102 CYS 102 170 170 CYS CYS A . n B 2 103 THR 103 171 171 THR THR A . n B 2 104 PRO 104 172 172 PRO PRO A . n B 2 105 TRP 105 173 173 TRP TRP A . n B 2 106 SER 106 174 174 SER SER A . n B 2 107 ASP 107 175 175 ASP ASP A . n B 2 108 ILE 108 176 176 ILE ILE A . n B 2 109 GLU 109 177 177 GLU GLU A . n B 2 110 CYS 110 178 178 CYS CYS A . n B 2 111 VAL 111 179 179 VAL VAL A . n B 2 112 HIS 112 180 180 HIS HIS A . n B 2 113 LYS 113 181 181 LYS LYS A . n B 2 114 GLU 114 182 182 GLU GLU A . n B 2 115 SER 115 183 183 SER SER A . n B 2 116 GLY 116 184 184 GLY GLY A . n B 2 117 ASP 117 185 185 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 282 200 HOH TIP B . C 3 HOH 2 283 201 HOH TIP B . C 3 HOH 3 284 202 HOH TIP B . C 3 HOH 4 285 203 HOH TIP B . C 3 HOH 5 286 204 HOH TIP B . C 3 HOH 6 287 205 HOH TIP B . C 3 HOH 7 288 207 HOH TIP B . C 3 HOH 8 289 208 HOH TIP B . C 3 HOH 9 290 210 HOH TIP B . C 3 HOH 10 291 213 HOH TIP B . C 3 HOH 11 292 216 HOH TIP B . C 3 HOH 12 293 217 HOH TIP B . C 3 HOH 13 294 221 HOH TIP B . C 3 HOH 14 295 222 HOH TIP B . C 3 HOH 15 296 227 HOH TIP B . C 3 HOH 16 297 229 HOH TIP B . C 3 HOH 17 298 230 HOH TIP B . C 3 HOH 18 299 231 HOH TIP B . C 3 HOH 19 300 232 HOH TIP B . C 3 HOH 20 301 234 HOH TIP B . C 3 HOH 21 302 235 HOH TIP B . C 3 HOH 22 303 237 HOH TIP B . C 3 HOH 23 304 238 HOH TIP B . C 3 HOH 24 305 239 HOH TIP B . C 3 HOH 25 306 240 HOH TIP B . C 3 HOH 26 307 241 HOH TIP B . C 3 HOH 27 308 242 HOH TIP B . C 3 HOH 28 309 245 HOH TIP B . C 3 HOH 29 310 246 HOH TIP B . C 3 HOH 30 311 247 HOH TIP B . C 3 HOH 31 312 248 HOH TIP B . C 3 HOH 32 313 250 HOH TIP B . C 3 HOH 33 314 253 HOH TIP B . C 3 HOH 34 315 255 HOH TIP B . C 3 HOH 35 316 256 HOH TIP B . C 3 HOH 36 317 257 HOH TIP B . C 3 HOH 37 318 258 HOH TIP B . C 3 HOH 38 319 260 HOH TIP B . C 3 HOH 39 320 261 HOH TIP B . C 3 HOH 40 321 264 HOH TIP B . C 3 HOH 41 322 265 HOH TIP B . C 3 HOH 42 323 266 HOH TIP B . C 3 HOH 43 324 268 HOH TIP B . C 3 HOH 44 325 269 HOH TIP B . C 3 HOH 45 326 270 HOH TIP B . C 3 HOH 46 327 272 HOH TIP B . C 3 HOH 47 328 273 HOH TIP B . C 3 HOH 48 329 276 HOH TIP B . C 3 HOH 49 330 277 HOH TIP B . C 3 HOH 50 331 278 HOH TIP B . C 3 HOH 51 332 280 HOH TIP B . C 3 HOH 52 333 282 HOH TIP B . C 3 HOH 53 334 283 HOH TIP B . C 3 HOH 54 335 284 HOH TIP B . C 3 HOH 55 336 287 HOH TIP B . C 3 HOH 56 337 288 HOH TIP B . C 3 HOH 57 338 289 HOH TIP B . C 3 HOH 58 339 291 HOH TIP B . C 3 HOH 59 340 294 HOH TIP B . C 3 HOH 60 341 295 HOH TIP B . C 3 HOH 61 342 298 HOH TIP B . C 3 HOH 62 343 299 HOH TIP B . C 3 HOH 63 344 305 HOH TIP B . C 3 HOH 64 345 306 HOH TIP B . C 3 HOH 65 346 310 HOH TIP B . C 3 HOH 66 347 312 HOH TIP B . C 3 HOH 67 348 313 HOH TIP B . C 3 HOH 68 349 314 HOH TIP B . C 3 HOH 69 350 315 HOH TIP B . C 3 HOH 70 351 319 HOH TIP B . C 3 HOH 71 352 320 HOH TIP B . C 3 HOH 72 353 321 HOH TIP B . C 3 HOH 73 354 322 HOH TIP B . C 3 HOH 74 355 325 HOH TIP B . C 3 HOH 75 356 326 HOH TIP B . C 3 HOH 76 357 327 HOH TIP B . C 3 HOH 77 358 328 HOH TIP B . C 3 HOH 78 359 330 HOH TIP B . C 3 HOH 79 360 334 HOH TIP B . C 3 HOH 80 361 335 HOH TIP B . C 3 HOH 81 362 337 HOH TIP B . C 3 HOH 82 363 339 HOH TIP B . C 3 HOH 83 364 342 HOH TIP B . C 3 HOH 84 365 343 HOH TIP B . C 3 HOH 85 366 344 HOH TIP B . C 3 HOH 86 367 346 HOH TIP B . C 3 HOH 87 368 349 HOH TIP B . C 3 HOH 88 369 352 HOH TIP B . D 3 HOH 1 206 206 HOH TIP A . D 3 HOH 2 209 209 HOH TIP A . D 3 HOH 3 211 211 HOH TIP A . D 3 HOH 4 212 212 HOH TIP A . D 3 HOH 5 214 214 HOH TIP A . D 3 HOH 6 215 215 HOH TIP A . D 3 HOH 7 218 218 HOH TIP A . D 3 HOH 8 219 219 HOH TIP A . D 3 HOH 9 220 220 HOH TIP A . D 3 HOH 10 223 223 HOH TIP A . D 3 HOH 11 224 224 HOH TIP A . D 3 HOH 12 225 225 HOH TIP A . D 3 HOH 13 226 226 HOH TIP A . D 3 HOH 14 228 228 HOH TIP A . D 3 HOH 15 233 233 HOH TIP A . D 3 HOH 16 236 236 HOH TIP A . D 3 HOH 17 243 243 HOH TIP A . D 3 HOH 18 244 244 HOH TIP A . D 3 HOH 19 249 249 HOH TIP A . D 3 HOH 20 251 251 HOH TIP A . D 3 HOH 21 252 252 HOH TIP A . D 3 HOH 22 254 254 HOH TIP A . D 3 HOH 23 259 259 HOH TIP A . D 3 HOH 24 262 262 HOH TIP A . D 3 HOH 25 263 263 HOH TIP A . D 3 HOH 26 267 267 HOH TIP A . D 3 HOH 27 271 271 HOH TIP A . D 3 HOH 28 274 274 HOH TIP A . D 3 HOH 29 275 275 HOH TIP A . D 3 HOH 30 279 279 HOH TIP A . D 3 HOH 31 281 281 HOH TIP A . D 3 HOH 32 285 285 HOH TIP A . D 3 HOH 33 286 286 HOH TIP A . D 3 HOH 34 290 290 HOH TIP A . D 3 HOH 35 292 292 HOH TIP A . D 3 HOH 36 293 293 HOH TIP A . D 3 HOH 37 296 296 HOH TIP A . D 3 HOH 38 297 297 HOH TIP A . D 3 HOH 39 300 300 HOH TIP A . D 3 HOH 40 301 301 HOH TIP A . D 3 HOH 41 302 302 HOH TIP A . D 3 HOH 42 303 303 HOH TIP A . D 3 HOH 43 304 304 HOH TIP A . D 3 HOH 44 307 307 HOH TIP A . D 3 HOH 45 308 308 HOH TIP A . D 3 HOH 46 309 309 HOH TIP A . D 3 HOH 47 311 311 HOH TIP A . D 3 HOH 48 316 316 HOH TIP A . D 3 HOH 49 317 317 HOH TIP A . D 3 HOH 50 318 318 HOH TIP A . D 3 HOH 51 323 323 HOH TIP A . D 3 HOH 52 324 324 HOH TIP A . D 3 HOH 53 329 329 HOH TIP A . D 3 HOH 54 331 331 HOH TIP A . D 3 HOH 55 332 332 HOH TIP A . D 3 HOH 56 333 333 HOH TIP A . D 3 HOH 57 336 336 HOH TIP A . D 3 HOH 58 338 338 HOH TIP A . D 3 HOH 59 340 340 HOH TIP A . D 3 HOH 60 341 341 HOH TIP A . D 3 HOH 61 345 345 HOH TIP A . D 3 HOH 62 347 347 HOH TIP A . D 3 HOH 63 348 348 HOH TIP A . D 3 HOH 64 350 350 HOH TIP A . D 3 HOH 65 351 351 HOH TIP A . D 3 HOH 66 353 353 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 95.5200000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 47.7600000000 -0.8660254038 -0.5000000000 0.0000000000 82.7227465695 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-11-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 4 'Structure model' pdbx_unobs_or_zero_occ_atoms # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_exptl_crystal_grow.temp' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 AMoRE phasing . ? 3 CNS refinement . ? 4 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 125 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 125 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_766 _pdbx_validate_symm_contact.dist 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 N _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 LYS _pdbx_validate_rmsd_angle.auth_seq_id_1 181 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 LYS _pdbx_validate_rmsd_angle.auth_seq_id_2 181 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 LYS _pdbx_validate_rmsd_angle.auth_seq_id_3 181 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 88.77 _pdbx_validate_rmsd_angle.angle_target_value 111.00 _pdbx_validate_rmsd_angle.angle_deviation -22.23 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN B 120 ? ? -35.03 114.08 2 1 ARG B 130 ? ? 61.40 -86.73 3 1 SER B 133 ? ? 27.44 -76.58 4 1 THR B 135 ? ? -98.12 -82.91 5 1 LEU B 136 ? ? 49.87 -79.82 6 1 SER B 137 ? ? 71.10 -140.31 7 1 ASN B 140 ? ? 27.69 -138.90 8 1 SER B 141 ? ? 168.25 143.26 9 1 ASN B 143 ? ? -110.87 -120.39 10 1 GLU B 144 ? ? -172.82 -123.22 11 1 LYS B 145 ? ? -56.43 7.23 12 1 ILE B 196 ? ? -61.54 -163.39 13 1 GLU B 198 ? ? -0.55 -118.30 14 1 THR B 200 ? ? -17.55 159.31 15 1 LYS B 201 ? ? 176.97 -8.80 16 1 ASP B 203 ? ? -178.85 107.03 17 1 THR B 214 ? ? -120.35 -155.88 18 1 SER B 215 ? ? -80.86 38.77 19 1 CYS B 230 ? ? -109.89 -84.23 20 1 TRP B 231 ? ? -12.84 -100.66 21 1 SER B 232 ? ? 101.48 141.13 22 1 LYS B 233 ? ? 58.35 -82.57 23 1 GLN A 71 ? ? -142.98 -155.27 24 1 LYS A 72 ? ? -143.38 -86.27 25 1 ARG A 73 ? ? -111.22 -89.42 26 1 SER A 77 ? ? -64.11 -121.29 27 1 GLU A 89 ? ? -53.13 -99.63 28 1 LYS A 166 ? ? -40.03 -115.43 29 1 VAL A 167 ? ? 101.93 -29.89 30 1 HIS A 180 ? ? 131.48 21.81 31 1 LYS A 181 ? ? -99.92 43.94 32 1 GLU A 182 ? ? 98.24 130.70 33 1 SER A 183 ? ? 153.39 169.53 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #