HEADER DNA 05-NOV-92 1D53 TITLE CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF D(CGCICICG), AN TITLE 2 OCTANUCLEOTIDE CONTAINING INOSINE, AND ITS COMPARISON WITH D(CGCG) TITLE 3 AND D(CGCGCG) STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*CP*GP*CP*G)-3'); COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES KEYWDS Z-DNA, DOUBLE HELIX, DNA EXPDTA X-RAY DIFFRACTION AUTHOR V.D.KUMAR,R.W.HARRISON,L.C.ANDREWS,I.T.WEBER REVDAT 6 07-FEB-24 1D53 1 REMARK REVDAT 5 24-FEB-09 1D53 1 VERSN REVDAT 4 01-APR-03 1D53 1 JRNL REVDAT 3 28-JUN-02 1D53 1 REMARK REVDAT 2 27-NOV-00 1D53 5 REVDAT 1 13-APR-93 1D53 0 JRNL AUTH V.D.KUMAR,R.W.HARRISON,L.C.ANDREWS,I.T.WEBER JRNL TITL CRYSTAL STRUCTURE AT 1.5-A RESOLUTION OF D(CGCICICG), AN JRNL TITL 2 OCTANUCLEOTIDE CONTAINING INOSINE, AND ITS COMPARISON WITH JRNL TITL 3 D(CGCG) AND D(CGCGCG) STRUCTURES. JRNL REF BIOCHEMISTRY V. 31 1541 1992 JRNL REFN ISSN 0006-2960 JRNL PMID 1737011 JRNL DOI 10.1021/BI00120A035 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.V.GESSNER,C.A.FREDERICK,G.J.QUIGLEY,A.RICH,A.H.-J.WANG REMARK 1 TITL THE MOLECULAR STRUCTURE OF THE LEFT-HANDED Z-DNA DOUBLE REMARK 1 TITL 2 HELIX AT 1.0 ANGSTROM ATOMIC RESOLUTION. GEOMETRY, REMARK 1 TITL 3 CONFORMATION, AND IONIC INTERACTION OF D(CGCGCG) REMARK 1 REF J.BIOL.CHEM. V. 264 7921 1989 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.FUJII,A.H.-J.WANG,G.J.QUIGLEY,H.WESTERINK,G.VAN DER MAREL, REMARK 1 AUTH 2 J.H.VAN BOOM,A.RICH REMARK 1 TITL THE OCTAMERS D(CGCGCGCG) AND D(CGCATGCG) BOTH CRYSTALLIZE AS REMARK 1 TITL 2 Z-DNA IN THE SAME HEXAGONAL LATTICE REMARK 1 REF BIOPOLYMERS V. 24 243 1985 REMARK 1 REFN ISSN 0006-3525 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.L.CRAWFORD,F.J.KOLPAK,A.H.-J.WANG,G.J.QUIGLEY, REMARK 1 AUTH 2 J.H.VAN BOOM,G.VAN DER MAREL,A.RICH REMARK 1 TITL THE TETRAMER D(CPGPCPG) CRYSTALLIZES AS A LEFT-HANDED DOUBLE REMARK 1 TITL 2 HELIX REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 77 4016 1980 REMARK 1 REFN ISSN 0027-8424 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.DREW,T.TAKANO,S.TANAKA,K.ITAKURA,R.DICKERSON REMARK 1 TITL HIGH-SALT D(CPGPCPG), A LEFT-HANDED Z'DNA DOUBLE HELIX REMARK 1 REF NATURE V. 286 567 1980 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 5.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 2503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 234 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000172654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1971 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.13333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.56667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.85000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 7.28333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.41667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -7.28333 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 14.56667 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 7.28333 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 31.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -14.56667 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C4 DC B 3 O HOH B 44 1.67 REMARK 500 O5' DG D 10 O HOH D 16 1.73 REMARK 500 OP2 DG C 8 O HOH C 32 1.83 REMARK 500 C5 DC B 3 O HOH B 44 1.87 REMARK 500 O5' DC C 7 O HOH C 45 1.90 REMARK 500 O HOH B 17 O HOH B 29 1.90 REMARK 500 O HOH B 72 O HOH D 71 1.90 REMARK 500 O3' DC B 3 O HOH B 59 1.98 REMARK 500 C1' DG B 4 O HOH B 42 2.01 REMARK 500 O5' DG D 12 O HOH D 69 2.01 REMARK 500 N2 DG D 12 O HOH D 18 2.04 REMARK 500 N3 DG D 12 O HOH D 18 2.10 REMARK 500 OP2 DG B 4 O HOH B 47 2.13 REMARK 500 O5' DC D 11 O HOH D 54 2.13 REMARK 500 O HOH B 15 O HOH D 71 2.14 REMARK 500 OP2 DG B 4 O HOH B 48 2.14 REMARK 500 O HOH D 33 O HOH D 36 2.16 REMARK 500 O5' DG B 4 O HOH B 47 2.16 REMARK 500 C4' DC D 9 O HOH D 16 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O5' DC D 9 O HOH D 77 3665 0.95 REMARK 500 C5' DC D 9 O HOH D 77 3665 1.08 REMARK 500 O3' DG C 8 O HOH C 66 3665 1.72 REMARK 500 O HOH A 61 O HOH D 40 5455 1.87 REMARK 500 O HOH C 39 O HOH D 50 6654 1.91 REMARK 500 O HOH A 27 O HOH D 79 5455 1.95 REMARK 500 O HOH A 75 O HOH B 64 2554 1.96 REMARK 500 O HOH D 62 O HOH D 81 5555 2.00 REMARK 500 O HOH A 67 O HOH B 76 2554 2.13 REMARK 500 O HOH D 13 O HOH D 58 3665 2.15 REMARK 500 O HOH B 76 O HOH C 53 1455 2.16 REMARK 500 N7 DG D 12 O HOH D 57 2654 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 N1 DC A 1 C6 -0.042 REMARK 500 DG A 2 P DG A 2 OP2 -0.128 REMARK 500 DG A 2 O4' DG A 2 C4' -0.067 REMARK 500 DC B 3 N3 DC B 3 C4 0.050 REMARK 500 DG B 4 P DG B 4 OP1 0.197 REMARK 500 DG B 4 P DG B 4 O5' 0.142 REMARK 500 DG B 4 O3' DG B 4 C3' -0.045 REMARK 500 DC C 5 N3 DC C 5 C4 0.056 REMARK 500 DG C 6 P DG C 6 O5' -0.126 REMARK 500 DG C 6 N1 DG C 6 C2 -0.060 REMARK 500 DG C 6 C4 DG C 6 C5 -0.045 REMARK 500 DG C 6 N7 DG C 6 C8 -0.043 REMARK 500 DC C 7 O3' DG C 8 P -0.090 REMARK 500 DG C 8 P DG C 8 OP1 0.103 REMARK 500 DG C 8 N1 DG C 8 C2 -0.054 REMARK 500 DG C 8 C2 DG C 8 N3 0.090 REMARK 500 DG C 8 C8 DG C 8 N9 -0.042 REMARK 500 DC D 9 O4' DC D 9 C4' -0.060 REMARK 500 DG D 10 C2' DG D 10 C1' -0.071 REMARK 500 DG D 10 C8 DG D 10 N9 -0.055 REMARK 500 DG D 10 O3' DC D 11 P 0.099 REMARK 500 DC D 11 P DC D 11 OP1 -0.121 REMARK 500 DC D 11 P DC D 11 O5' 0.170 REMARK 500 DC D 11 C4 DC D 11 C5 -0.059 REMARK 500 DG D 12 O4' DG D 12 C1' 0.069 REMARK 500 DG D 12 C8 DG D 12 N9 -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O5' - C5' - C4' ANGL. DEV. = -8.3 DEGREES REMARK 500 DC A 1 O4' - C4' - C3' ANGL. DEV. = 3.8 DEGREES REMARK 500 DC A 1 C1' - O4' - C4' ANGL. DEV. = -11.6 DEGREES REMARK 500 DC A 1 C3' - C2' - C1' ANGL. DEV. = -13.2 DEGREES REMARK 500 DC A 1 C6 - N1 - C2 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC A 1 N1 - C2 - N3 ANGL. DEV. = -8.3 DEGREES REMARK 500 DC A 1 C2 - N3 - C4 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC A 1 C4 - C5 - C6 ANGL. DEV. = -4.0 DEGREES REMARK 500 DC A 1 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC A 1 N1 - C2 - O2 ANGL. DEV. = 7.7 DEGREES REMARK 500 DC A 1 C3' - O3' - P ANGL. DEV. = -16.0 DEGREES REMARK 500 DG A 2 O5' - P - OP1 ANGL. DEV. = -21.7 DEGREES REMARK 500 DG A 2 O5' - P - OP2 ANGL. DEV. = 27.0 DEGREES REMARK 500 DG A 2 P - O5' - C5' ANGL. DEV. = -12.1 DEGREES REMARK 500 DG A 2 O4' - C4' - C3' ANGL. DEV. = -8.9 DEGREES REMARK 500 DG A 2 N7 - C8 - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC B 3 C2 - N3 - C4 ANGL. DEV. = -4.8 DEGREES REMARK 500 DC B 3 C3' - O3' - P ANGL. DEV. = 32.6 DEGREES REMARK 500 DG B 4 O3' - P - OP2 ANGL. DEV. = 15.8 DEGREES REMARK 500 DG B 4 OP1 - P - OP2 ANGL. DEV. = -14.4 DEGREES REMARK 500 DG B 4 O5' - P - OP1 ANGL. DEV. = -11.2 DEGREES REMARK 500 DG B 4 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DG B 4 C6 - N1 - C2 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG B 4 C2 - N3 - C4 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG B 4 N3 - C4 - C5 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG B 4 C5 - C6 - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG B 4 N3 - C4 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG B 4 N3 - C2 - N2 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG B 4 C5 - C6 - O6 ANGL. DEV. = -7.9 DEGREES REMARK 500 DG B 4 C4 - N9 - C1' ANGL. DEV. = -7.9 DEGREES REMARK 500 DC C 5 C4' - C3' - C2' ANGL. DEV. = -7.8 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC C 5 C6 - N1 - C2 ANGL. DEV. = -3.4 DEGREES REMARK 500 DC C 5 C2 - N3 - C4 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC C 5 N3 - C4 - C5 ANGL. DEV. = -7.5 DEGREES REMARK 500 DC C 5 C4 - C5 - C6 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC C 5 N1 - C2 - O2 ANGL. DEV. = -3.9 DEGREES REMARK 500 DC C 5 N3 - C2 - O2 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC C 5 C5 - C4 - N4 ANGL. DEV. = 7.2 DEGREES REMARK 500 DC C 5 C6 - N1 - C1' ANGL. DEV. = 11.7 DEGREES REMARK 500 DC C 5 C2 - N1 - C1' ANGL. DEV. = -8.5 DEGREES REMARK 500 DC C 5 C3' - O3' - P ANGL. DEV. = 13.8 DEGREES REMARK 500 DG C 6 O3' - P - O5' ANGL. DEV. = 14.6 DEGREES REMARK 500 DG C 6 OP1 - P - OP2 ANGL. DEV. = -11.1 DEGREES REMARK 500 DG C 6 O5' - P - OP1 ANGL. DEV. = -10.9 DEGREES REMARK 500 DG C 6 O5' - P - OP2 ANGL. DEV. = 16.1 DEGREES REMARK 500 DG C 6 O5' - C5' - C4' ANGL. DEV. = 16.9 DEGREES REMARK 500 DG C 6 C1' - O4' - C4' ANGL. DEV. = 5.8 DEGREES REMARK 500 DG C 6 N3 - C4 - C5 ANGL. DEV. = -4.1 DEGREES REMARK 500 DG C 6 C4 - C5 - N7 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 116 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1D53 A 1 2 PDB 1D53 1D53 1 2 DBREF 1D53 B 3 4 PDB 1D53 1D53 3 4 DBREF 1D53 C 5 8 PDB 1D53 1D53 5 8 DBREF 1D53 D 9 12 PDB 1D53 1D53 9 12 SEQRES 1 A 2 DC DG SEQRES 1 B 2 DC DG SEQRES 1 C 4 DC DG DC DG SEQRES 1 D 4 DC DG DC DG FORMUL 5 HOH *69(H2 O) CRYST1 31.000 31.000 43.700 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032258 0.018624 0.000000 0.00000 SCALE2 0.000000 0.037248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022883 0.00000