HEADER TRANSCRIPTION/DNA 06-MAR-92 1D66 TITLE DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*AP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3'); COMPND 4 CHAIN: D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*TP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3'); COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (GAL4); COMPND 13 CHAIN: A, B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.MARMORSTEIN,M.CAREY,M.PTASHNE,S.C.HARRISON REVDAT 4 07-FEB-24 1D66 1 REMARK LINK REVDAT 3 24-FEB-09 1D66 1 VERSN REVDAT 2 01-APR-03 1D66 1 JRNL REVDAT 1 06-MAR-92 1D66 0 JRNL AUTH R.MARMORSTEIN,M.CAREY,M.PTASHNE,S.C.HARRISON JRNL TITL DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN-DNA COMPLEX. JRNL REF NATURE V. 356 408 1992 JRNL REFN ISSN 0028-0836 JRNL PMID 1557122 JRNL DOI 10.1038/356408A0 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 16.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 934 REMARK 3 NUCLEIC ACID ATOMS : 773 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 2.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 118.00 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.80, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.85000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.42500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.27500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.42500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.42500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.42500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.27500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.42500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.42500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN APPLIED TO REMARK 300 CHAIN *A*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 RESIDUES LEU A 19 - LYS A 27 AND LEU B 19 - LYS B 27 FORM REMARK 400 TIGHT TURNS WHICH CONNECT HELICES. RESIDUES TRP A 39 - REMARK 400 LEU A 49 AND TRP B 39 - LEU B 49 FORM EXTENDED CHAINS REMARK 400 WHICH CONNECT HELICES. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ILE A 7 REMARK 465 GLU A 65 REMARK 465 PHE A 66 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LEU B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 ILE B 7 REMARK 465 GLU B 65 REMARK 465 PHE B 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 1 C5' DC D 1 C4' 0.090 REMARK 500 DT D 15 N1 DT D 15 C2 0.062 REMARK 500 DT D 15 C4 DT D 15 C5 0.055 REMARK 500 DT D 15 C6 DT D 15 N1 0.054 REMARK 500 DT D 15 C5 DT D 15 C7 0.044 REMARK 500 DG D 18 C5' DG D 18 C4' 0.073 REMARK 500 DG E 22 P DG E 22 O5' 0.060 REMARK 500 DG E 23 C5' DG E 23 C4' 0.043 REMARK 500 DA E 24 C5' DA E 24 C4' 0.054 REMARK 500 DG E 25 O3' DG E 26 P -0.074 REMARK 500 DG E 26 O3' DG E 26 C3' -0.044 REMARK 500 DT E 29 P DT E 29 O5' -0.066 REMARK 500 DT E 29 C2' DT E 29 C1' -0.066 REMARK 500 DT E 29 C6 DT E 29 N1 -0.046 REMARK 500 DT E 34 C6 DT E 34 N1 0.050 REMARK 500 HIS B 53 NE2 HIS B 53 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC D 1 N1 - C2 - O2 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC D 2 O4' - C1' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC D 2 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG D 4 O4' - C1' - C2' ANGL. DEV. = -7.4 DEGREES REMARK 500 DG D 4 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 DA D 5 O4' - C1' - C2' ANGL. DEV. = -7.2 DEGREES REMARK 500 DG D 6 O4' - C1' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG D 6 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 DG D 6 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 DC D 9 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC D 9 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC D 9 N1 - C2 - O2 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC D 9 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC D 9 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DA D 10 N1 - C6 - N6 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG D 11 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG D 11 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DG D 11 C3' - O3' - P ANGL. DEV. = 9.5 DEGREES REMARK 500 DT D 12 O4' - C1' - C2' ANGL. DEV. = -7.0 DEGREES REMARK 500 DT D 12 C4 - C5 - C6 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT D 12 N3 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT D 12 C5 - C4 - O4 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT D 12 C4 - C5 - C7 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT D 12 C6 - C5 - C7 ANGL. DEV. = -8.6 DEGREES REMARK 500 DT D 12 C3' - O3' - P ANGL. DEV. = 12.4 DEGREES REMARK 500 DC D 13 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC D 13 N1 - C2 - O2 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC D 13 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC D 14 P - O5' - C5' ANGL. DEV. = -12.9 DEGREES REMARK 500 DC D 14 C4' - C3' - C2' ANGL. DEV. = -7.8 DEGREES REMARK 500 DC D 14 C3' - C2' - C1' ANGL. DEV. = 7.6 DEGREES REMARK 500 DC D 14 O4' - C1' - C2' ANGL. DEV. = -16.1 DEGREES REMARK 500 DC D 14 O4' - C1' - N1 ANGL. DEV. = 7.2 DEGREES REMARK 500 DC D 14 C2 - N3 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 15 C4' - C3' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT D 15 O4' - C1' - C2' ANGL. DEV. = -9.0 DEGREES REMARK 500 DT D 15 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DT D 15 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 DT D 15 C3' - O3' - P ANGL. DEV. = 12.1 DEGREES REMARK 500 DC D 16 O4' - C1' - C2' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC D 17 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG D 18 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG D 19 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC E 20 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC E 21 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG E 22 P - O5' - C5' ANGL. DEV. = 10.8 DEGREES REMARK 500 DG E 22 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG E 23 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 98 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 12.54 83.26 REMARK 500 GLU A 56 -70.82 -58.15 REMARK 500 ARG A 63 -37.05 172.62 REMARK 500 LYS B 23 13.86 54.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT D 12 0.07 SIDE CHAIN REMARK 500 DT D 15 0.07 SIDE CHAIN REMARK 500 DG D 18 0.05 SIDE CHAIN REMARK 500 DG E 37 0.05 SIDE CHAIN REMARK 500 DG E 38 0.07 SIDE CHAIN REMARK 500 TYR B 40 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 67 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 28 SG 91.9 REMARK 620 3 CYS A 31 SG 119.6 104.5 REMARK 620 4 CYS A 38 SG 121.9 108.5 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 68 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 14 SG 106.4 REMARK 620 3 CYS A 21 SG 104.3 112.5 REMARK 620 4 CYS A 28 SG 92.1 123.8 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 67 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 11 SG REMARK 620 2 CYS B 28 SG 92.3 REMARK 620 3 CYS B 31 SG 120.4 105.3 REMARK 620 4 CYS B 38 SG 114.4 109.0 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 68 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 11 SG REMARK 620 2 CYS B 14 SG 100.8 REMARK 620 3 CYS B 21 SG 109.4 119.5 REMARK 620 4 CYS B 28 SG 94.5 123.5 105.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 67 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 68 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 67 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 68 DBREF 1D66 A 1 65 UNP P04386 GAL4_YEAST 1 65 DBREF 1D66 B 1 65 UNP P04386 GAL4_YEAST 1 65 DBREF 1D66 D 1 19 PDB 1D66 1D66 1 19 DBREF 1D66 E 20 38 PDB 1D66 1D66 20 38 SEQRES 1 D 19 DC DC DG DG DA DG DG DA DC DA DG DT DC SEQRES 2 D 19 DC DT DC DC DG DG SEQRES 1 E 19 DC DC DG DG DA DG DG DA DC DT DG DT DC SEQRES 2 E 19 DC DT DC DC DG DG SEQRES 1 A 66 MET LYS LEU LEU SER SER ILE GLU GLN ALA CYS ASP ILE SEQRES 2 A 66 CYS ARG LEU LYS LYS LEU LYS CYS SER LYS GLU LYS PRO SEQRES 3 A 66 LYS CYS ALA LYS CYS LEU LYS ASN ASN TRP GLU CYS ARG SEQRES 4 A 66 TYR SER PRO LYS THR LYS ARG SER PRO LEU THR ARG ALA SEQRES 5 A 66 HIS LEU THR GLU VAL GLU SER ARG LEU GLU ARG LEU GLU SEQRES 6 A 66 PHE SEQRES 1 B 66 MET LYS LEU LEU SER SER ILE GLU GLN ALA CYS ASP ILE SEQRES 2 B 66 CYS ARG LEU LYS LYS LEU LYS CYS SER LYS GLU LYS PRO SEQRES 3 B 66 LYS CYS ALA LYS CYS LEU LYS ASN ASN TRP GLU CYS ARG SEQRES 4 B 66 TYR SER PRO LYS THR LYS ARG SER PRO LEU THR ARG ALA SEQRES 5 B 66 HIS LEU THR GLU VAL GLU SER ARG LEU GLU ARG LEU GLU SEQRES 6 B 66 PHE HET CD A 67 1 HET CD A 68 1 HET CD B 67 1 HET CD B 68 1 HETNAM CD CADMIUM ION FORMUL 5 CD 4(CD 2+) FORMUL 9 HOH *51(H2 O) HELIX 1 H1A CYS A 11 LYS A 18 1 8 HELIX 2 H2A CYS A 28 ASN A 35 1 8 HELIX 3 H3A THR A 50 LEU A 64 1 15 HELIX 4 H1B CYS B 11 LYS B 18 1 8 HELIX 5 H2B CYS B 28 ASN B 35 1 8 HELIX 6 H3B THR B 50 LEU B 64 1 15 LINK SG CYS A 11 CD CD A 67 1555 1555 2.49 LINK SG CYS A 11 CD CD A 68 1555 1555 2.52 LINK SG CYS A 14 CD CD A 68 1555 1555 2.50 LINK SG CYS A 21 CD CD A 68 1555 1555 2.50 LINK SG CYS A 28 CD CD A 67 1555 1555 2.55 LINK SG CYS A 28 CD CD A 68 1555 1555 2.51 LINK SG CYS A 31 CD CD A 67 1555 1555 2.49 LINK SG CYS A 38 CD CD A 67 1555 1555 2.46 LINK SG CYS B 11 CD CD B 67 1555 1555 2.54 LINK SG CYS B 11 CD CD B 68 1555 1555 2.49 LINK SG CYS B 14 CD CD B 68 1555 1555 2.48 LINK SG CYS B 21 CD CD B 68 1555 1555 2.47 LINK SG CYS B 28 CD CD B 67 1555 1555 2.54 LINK SG CYS B 28 CD CD B 68 1555 1555 2.50 LINK SG CYS B 31 CD CD B 67 1555 1555 2.45 LINK SG CYS B 38 CD CD B 67 1555 1555 2.48 CISPEP 1 LYS A 25 PRO A 26 0 29.14 CISPEP 2 LYS B 25 PRO B 26 0 6.02 SITE 1 AC1 5 CYS B 11 CYS B 28 CYS B 31 CYS B 38 SITE 2 AC1 5 CD B 68 SITE 1 AC2 5 CYS B 11 CYS B 14 CYS B 21 CYS B 28 SITE 2 AC2 5 CD B 67 SITE 1 AC3 5 CYS A 11 CYS A 28 CYS A 31 CYS A 38 SITE 2 AC3 5 CD A 68 SITE 1 AC4 5 CYS A 11 CYS A 14 CYS A 21 CYS A 28 SITE 2 AC4 5 CD A 67 CRYST1 80.850 80.850 73.700 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013569 0.00000 MTRIX1 1 0.969990 0.014680 -0.242700 7.19246 1 MTRIX2 1 0.014290 -0.999900 -0.003900 83.38941 1 MTRIX3 1 -0.242710 -0.000190 -0.970100 62.87497 1 TER 388 DG D 19 TER 775 DG E 38 TER 1243 LEU A 64 TER 1711 LEU B 64 HETATM 1712 CD CD A 67 31.568 64.749 48.919 1.00 34.71 CD HETATM 1713 CD CD A 68 33.200 64.497 45.835 1.00 39.60 CD HETATM 1714 CD CD B 67 27.076 19.064 7.950 1.00 33.02 CD HETATM 1715 CD CD B 68 29.419 19.603 10.396 1.00 27.81 CD HETATM 1716 O HOH D 306 37.406 51.241 33.991 1.00 33.77 O HETATM 1717 O HOH D 307 35.049 11.005 23.803 1.00 7.83 O HETATM 1718 O HOH D 319 27.041 67.851 27.818 1.00 20.11 O HETATM 1719 O HOH D 322 33.924 29.304 20.485 1.00 31.84 O HETATM 1720 O HOH D 324 33.012 61.686 26.550 1.00 33.56 O HETATM 1721 O HOH D 333 23.308 29.114 22.729 1.00 46.94 O HETATM 1722 O HOH D 348 26.258 37.648 39.334 1.00 39.21 O HETATM 1723 O HOH D 352 35.915 42.774 26.583 1.00 19.47 O HETATM 1724 O HOH D 381 35.469 39.367 39.663 1.00 21.99 O HETATM 1725 O HOH D 384 21.875 32.973 25.371 1.00 21.98 O HETATM 1726 O HOH D 385 29.390 38.325 23.820 1.00 56.40 O HETATM 1727 O HOH D 397 31.124 54.333 25.722 1.00 55.40 O HETATM 1728 O HOH D 410 43.299 50.266 34.609 1.00 45.51 O HETATM 1729 O HOH E 323 43.954 65.235 24.629 1.00 36.82 O HETATM 1730 O HOH E 328 32.376 35.268 20.508 1.00 22.49 O HETATM 1731 O HOH E 332 27.997 17.617 36.417 1.00 18.19 O HETATM 1732 O HOH E 344 32.948 19.088 30.996 1.00 42.38 O HETATM 1733 O HOH E 356 23.521 50.754 32.985 1.00 50.79 O HETATM 1734 O HOH E 358 29.553 15.775 37.738 1.00 22.71 O HETATM 1735 O HOH E 366 38.611 58.474 32.785 1.00 38.26 O HETATM 1736 O HOH E 391 32.716 49.404 25.427 1.00 21.87 O HETATM 1737 O HOH E 392 24.390 12.298 19.796 1.00 22.11 O HETATM 1738 O HOH E 406 35.260 31.615 19.889 1.00 52.00 O HETATM 1739 O HOH E 430 24.263 23.560 28.758 1.00 43.91 O HETATM 1740 O HOH A 301 40.594 60.277 53.968 1.00 16.15 O HETATM 1741 O HOH A 308 7.906 34.854 23.766 1.00 10.67 O HETATM 1742 O HOH A 314 21.437 41.420 41.422 1.00 36.22 O HETATM 1743 O HOH A 317 10.573 35.246 23.116 1.00 18.77 O HETATM 1744 O HOH A 321 27.231 59.493 37.975 1.00 49.32 O HETATM 1745 O HOH A 325 27.352 64.364 48.625 1.00 16.28 O HETATM 1746 O HOH A 329 27.153 66.943 49.188 1.00 17.70 O HETATM 1747 O HOH A 343 4.188 30.853 19.946 1.00 11.90 O HETATM 1748 O HOH A 346 23.786 59.278 40.173 1.00 12.60 O HETATM 1749 O HOH A 387 28.389 57.129 45.550 1.00 5.77 O HETATM 1750 O HOH A 424 4.397 40.377 19.461 1.00 53.64 O HETATM 1751 O HOH A 425 32.789 71.338 56.105 1.00 55.11 O HETATM 1752 O HOH A 429 31.760 60.488 54.809 1.00 20.73 O HETATM 1753 O HOH A 431 19.676 65.587 53.502 1.00 60.85 O HETATM 1754 O HOH B 303 31.542 20.239 0.267 1.00 14.15 O HETATM 1755 O HOH B 304 37.794 18.262 6.368 1.00 37.99 O HETATM 1756 O HOH B 311 33.586 13.579 3.877 1.00 16.98 O HETATM 1757 O HOH B 316 11.376 43.159 21.444 1.00 22.91 O HETATM 1758 O HOH B 340 26.787 12.681 1.066 1.00 11.09 O HETATM 1759 O HOH B 342 2.158 45.483 27.638 1.00 50.33 O HETATM 1760 O HOH B 353 24.861 14.149 2.233 1.00 48.40 O HETATM 1761 O HOH B 377 40.240 19.747 6.146 1.00 41.20 O HETATM 1762 O HOH B 379 19.526 13.943 5.878 1.00 39.67 O HETATM 1763 O HOH B 380 36.021 26.111 4.961 1.00 27.70 O HETATM 1764 O HOH B 382 25.348 23.782 2.827 1.00 48.06 O HETATM 1765 O HOH B 414 38.229 17.928 9.245 1.00 45.12 O HETATM 1766 O HOH B 432 21.625 8.833 3.720 1.00 23.61 O CONECT 804 1712 1713 CONECT 826 1713 CONECT 886 1713 CONECT 941 1712 1713 CONECT 961 1712 CONECT 1023 1712 CONECT 1272 1714 1715 CONECT 1294 1715 CONECT 1354 1715 CONECT 1409 1714 1715 CONECT 1429 1714 CONECT 1491 1714 CONECT 1712 804 941 961 1023 CONECT 1713 804 826 886 941 CONECT 1714 1272 1409 1429 1491 CONECT 1715 1272 1294 1354 1409 MASTER 451 0 4 6 0 0 8 9 1762 4 16 16 END