HEADER TRANSCRIPTION/DNA 06-MAR-92 1D66 TITLE DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*AP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3'); COMPND 4 CHAIN: D; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*CP*GP*GP*AP*GP*GP*AP*CP*TP*GP*TP*CP*CP*TP*CP*C P*GP*G)-3'); COMPND 9 CHAIN: E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROTEIN (GAL4); COMPND 13 CHAIN: A, B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 7 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 8 ORGANISM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.MARMORSTEIN,M.CAREY,M.PTASHNE,S.C.HARRISON REVDAT 4 07-FEB-24 1D66 1 REMARK LINK REVDAT 3 24-FEB-09 1D66 1 VERSN REVDAT 2 01-APR-03 1D66 1 JRNL REVDAT 1 06-MAR-92 1D66 0 JRNL AUTH R.MARMORSTEIN,M.CAREY,M.PTASHNE,S.C.HARRISON JRNL TITL DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN-DNA COMPLEX. JRNL REF NATURE V. 356 408 1992 JRNL REFN ISSN 0028-0836 JRNL PMID 1557122 JRNL DOI 10.1038/356408A0 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 16.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6411 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 934 REMARK 3 NUCLEIC ACID ATOMS : 773 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 51 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 2.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D66 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 118.00 REMARK 200 PH : 6.80 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.80, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.85000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.42500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.27500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.42500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 18.42500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.42500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.42500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.27500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.42500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.42500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.42500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 36.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN APPLIED TO REMARK 300 CHAIN *A*. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 RESIDUES LEU A 19 - LYS A 27 AND LEU B 19 - LYS B 27 FORM REMARK 400 TIGHT TURNS WHICH CONNECT HELICES. RESIDUES TRP A 39 - REMARK 400 LEU A 49 AND TRP B 39 - LEU B 49 FORM EXTENDED CHAINS REMARK 400 WHICH CONNECT HELICES. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ILE A 7 REMARK 465 GLU A 65 REMARK 465 PHE A 66 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 LEU B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 SER B 6 REMARK 465 ILE B 7 REMARK 465 GLU B 65 REMARK 465 PHE B 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 1 C5' DC D 1 C4' 0.090 REMARK 500 DT D 15 N1 DT D 15 C2 0.062 REMARK 500 DT D 15 C4 DT D 15 C5 0.055 REMARK 500 DT D 15 C6 DT D 15 N1 0.054 REMARK 500 DT D 15 C5 DT D 15 C7 0.044 REMARK 500 DG D 18 C5' DG D 18 C4' 0.073 REMARK 500 DG E 22 P DG E 22 O5' 0.060 REMARK 500 DG E 23 C5' DG E 23 C4' 0.043 REMARK 500 DA E 24 C5' DA E 24 C4' 0.054 REMARK 500 DG E 25 O3' DG E 26 P -0.074 REMARK 500 DG E 26 O3' DG E 26 C3' -0.044 REMARK 500 DT E 29 P DT E 29 O5' -0.066 REMARK 500 DT E 29 C2' DT E 29 C1' -0.066 REMARK 500 DT E 29 C6 DT E 29 N1 -0.046 REMARK 500 DT E 34 C6 DT E 34 N1 0.050 REMARK 500 HIS B 53 NE2 HIS B 53 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC D 1 N1 - C2 - O2 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC D 2 O4' - C1' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 DC D 2 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC D 2 N1 - C2 - O2 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG D 4 O4' - C1' - C2' ANGL. DEV. = -7.4 DEGREES REMARK 500 DG D 4 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 DA D 5 O4' - C1' - C2' ANGL. DEV. = -7.2 DEGREES REMARK 500 DG D 6 O4' - C1' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG D 6 O4' - C1' - N9 ANGL. DEV. = 6.3 DEGREES REMARK 500 DG D 6 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 DC D 9 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC D 9 O4' - C1' - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC D 9 N1 - C2 - O2 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC D 9 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC D 9 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DA D 10 N1 - C6 - N6 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG D 11 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG D 11 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DG D 11 C3' - O3' - P ANGL. DEV. = 9.5 DEGREES REMARK 500 DT D 12 O4' - C1' - C2' ANGL. DEV. = -7.0 DEGREES REMARK 500 DT D 12 C4 - C5 - C6 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT D 12 N3 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT D 12 C5 - C4 - O4 ANGL. DEV. = 5.5 DEGREES REMARK 500 DT D 12 C4 - C5 - C7 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT D 12 C6 - C5 - C7 ANGL. DEV. = -8.6 DEGREES REMARK 500 DT D 12 C3' - O3' - P ANGL. DEV. = 12.4 DEGREES REMARK 500 DC D 13 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 DC D 13 N1 - C2 - O2 ANGL. DEV. = 5.0 DEGREES REMARK 500 DC D 13 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC D 14 P - O5' - C5' ANGL. DEV. = -12.9 DEGREES REMARK 500 DC D 14 C4' - C3' - C2' ANGL. DEV. = -7.8 DEGREES REMARK 500 DC D 14 C3' - C2' - C1' ANGL. DEV. = 7.6 DEGREES REMARK 500 DC D 14 O4' - C1' - C2' ANGL. DEV. = -16.1 DEGREES REMARK 500 DC D 14 O4' - C1' - N1 ANGL. DEV. = 7.2 DEGREES REMARK 500 DC D 14 C2 - N3 - C4 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT D 15 C4' - C3' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT D 15 O4' - C1' - C2' ANGL. DEV. = -9.0 DEGREES REMARK 500 DT D 15 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DT D 15 N3 - C2 - O2 ANGL. DEV. = -5.1 DEGREES REMARK 500 DT D 15 C3' - O3' - P ANGL. DEV. = 12.1 DEGREES REMARK 500 DC D 16 O4' - C1' - C2' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC D 17 O4' - C1' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG D 18 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG D 19 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC E 20 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC E 21 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG E 22 P - O5' - C5' ANGL. DEV. = 10.8 DEGREES REMARK 500 DG E 22 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG E 23 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 98 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 23 12.54 83.26 REMARK 500 GLU A 56 -70.82 -58.15 REMARK 500 ARG A 63 -37.05 172.62 REMARK 500 LYS B 23 13.86 54.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT D 12 0.07 SIDE CHAIN REMARK 500 DT D 15 0.07 SIDE CHAIN REMARK 500 DG D 18 0.05 SIDE CHAIN REMARK 500 DG E 37 0.05 SIDE CHAIN REMARK 500 DG E 38 0.07 SIDE CHAIN REMARK 500 TYR B 40 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 67 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 28 SG 91.9 REMARK 620 3 CYS A 31 SG 119.6 104.5 REMARK 620 4 CYS A 38 SG 121.9 108.5 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 68 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 14 SG 106.4 REMARK 620 3 CYS A 21 SG 104.3 112.5 REMARK 620 4 CYS A 28 SG 92.1 123.8 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 67 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 11 SG REMARK 620 2 CYS B 28 SG 92.3 REMARK 620 3 CYS B 31 SG 120.4 105.3 REMARK 620 4 CYS B 38 SG 114.4 109.0 112.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 68 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 11 SG REMARK 620 2 CYS B 14 SG 100.8 REMARK 620 3 CYS B 21 SG 109.4 119.5 REMARK 620 4 CYS B 28 SG 94.5 123.5 105.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 67 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 68 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 67 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 68 DBREF 1D66 A 1 65 UNP P04386 GAL4_YEAST 1 65 DBREF 1D66 B 1 65 UNP P04386 GAL4_YEAST 1 65 DBREF 1D66 D 1 19 PDB 1D66 1D66 1 19 DBREF 1D66 E 20 38 PDB 1D66 1D66 20 38 SEQRES 1 D 19 DC DC DG DG DA DG DG DA DC DA DG DT DC SEQRES 2 D 19 DC DT DC DC DG DG SEQRES 1 E 19 DC DC DG DG DA DG DG DA DC DT DG DT DC SEQRES 2 E 19 DC DT DC DC DG DG SEQRES 1 A 66 MET LYS LEU LEU SER SER ILE GLU GLN ALA CYS ASP ILE SEQRES 2 A 66 CYS ARG LEU LYS LYS LEU LYS CYS SER LYS GLU LYS PRO SEQRES 3 A 66 LYS CYS ALA LYS CYS LEU LYS ASN ASN TRP GLU CYS ARG SEQRES 4 A 66 TYR SER PRO LYS THR LYS ARG SER PRO LEU THR ARG ALA SEQRES 5 A 66 HIS LEU THR GLU VAL GLU SER ARG LEU GLU ARG LEU GLU SEQRES 6 A 66 PHE SEQRES 1 B 66 MET LYS LEU LEU SER SER ILE GLU GLN ALA CYS ASP ILE SEQRES 2 B 66 CYS ARG LEU LYS LYS LEU LYS CYS SER LYS GLU LYS PRO SEQRES 3 B 66 LYS CYS ALA LYS CYS LEU LYS ASN ASN TRP GLU CYS ARG SEQRES 4 B 66 TYR SER PRO LYS THR LYS ARG SER PRO LEU THR ARG ALA SEQRES 5 B 66 HIS LEU THR GLU VAL GLU SER ARG LEU GLU ARG LEU GLU SEQRES 6 B 66 PHE HET CD A 67 1 HET CD A 68 1 HET CD B 67 1 HET CD B 68 1 HETNAM CD CADMIUM ION FORMUL 5 CD 4(CD 2+) FORMUL 9 HOH *51(H2 O) HELIX 1 H1A CYS A 11 LYS A 18 1 8 HELIX 2 H2A CYS A 28 ASN A 35 1 8 HELIX 3 H3A THR A 50 LEU A 64 1 15 HELIX 4 H1B CYS B 11 LYS B 18 1 8 HELIX 5 H2B CYS B 28 ASN B 35 1 8 HELIX 6 H3B THR B 50 LEU B 64 1 15 LINK SG CYS A 11 CD CD A 67 1555 1555 2.49 LINK SG CYS A 11 CD CD A 68 1555 1555 2.52 LINK SG CYS A 14 CD CD A 68 1555 1555 2.50 LINK SG CYS A 21 CD CD A 68 1555 1555 2.50 LINK SG CYS A 28 CD CD A 67 1555 1555 2.55 LINK SG CYS A 28 CD CD A 68 1555 1555 2.51 LINK SG CYS A 31 CD CD A 67 1555 1555 2.49 LINK SG CYS A 38 CD CD A 67 1555 1555 2.46 LINK SG CYS B 11 CD CD B 67 1555 1555 2.54 LINK SG CYS B 11 CD CD B 68 1555 1555 2.49 LINK SG CYS B 14 CD CD B 68 1555 1555 2.48 LINK SG CYS B 21 CD CD B 68 1555 1555 2.47 LINK SG CYS B 28 CD CD B 67 1555 1555 2.54 LINK SG CYS B 28 CD CD B 68 1555 1555 2.50 LINK SG CYS B 31 CD CD B 67 1555 1555 2.45 LINK SG CYS B 38 CD CD B 67 1555 1555 2.48 CISPEP 1 LYS A 25 PRO A 26 0 29.14 CISPEP 2 LYS B 25 PRO B 26 0 6.02 SITE 1 AC1 5 CYS B 11 CYS B 28 CYS B 31 CYS B 38 SITE 2 AC1 5 CD B 68 SITE 1 AC2 5 CYS B 11 CYS B 14 CYS B 21 CYS B 28 SITE 2 AC2 5 CD B 67 SITE 1 AC3 5 CYS A 11 CYS A 28 CYS A 31 CYS A 38 SITE 2 AC3 5 CD A 68 SITE 1 AC4 5 CYS A 11 CYS A 14 CYS A 21 CYS A 28 SITE 2 AC4 5 CD A 67 CRYST1 80.850 80.850 73.700 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013569 0.00000 MTRIX1 1 0.969990 0.014680 -0.242700 7.19246 1 MTRIX2 1 0.014290 -0.999900 -0.003900 83.38941 1 MTRIX3 1 -0.242710 -0.000190 -0.970100 62.87497 1