HEADER DNA 15-APR-92 1D69 TITLE SOLUTION STRUCTURE OF [D(ATGAGCGAATA)]2: ADJACENT G:A MISMATCHES TITLE 2 STABILIZED BY CROSS-STRAND BASE-STACKING AND BII PHOSPHATE GROUPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*AP*TP*GP*AP*GP*CP*GP*AP*AP*TP*A)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS DNA, DOUBLE HELIX, SHEARED HYDROGEN BONDING EXPDTA SOLUTION NMR AUTHOR S.-H.CHOU,J.-W.CHENG,B.R.REID REVDAT 4 16-FEB-22 1D69 1 REMARK REVDAT 3 24-FEB-09 1D69 1 VERSN REVDAT 2 01-APR-03 1D69 1 JRNL REVDAT 1 15-APR-93 1D69 0 JRNL AUTH S.H.CHOU,J.W.CHENG,B.R.REID JRNL TITL SOLUTION STRUCTURE OF [D(ATGAGCGAATA)]2. ADJACENT G:A JRNL TITL 2 MISMATCHES STABILIZED BY CROSS-STRAND BASE-STACKING AND BII JRNL TITL 3 PHOSPHATE GROUPS. JRNL REF J.MOL.BIOL. V. 228 138 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1447778 JRNL DOI 10.1016/0022-2836(92)90497-8 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172670. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE 3' OVERHANGING ADENOSINE RESIDUES WERE NOT INCLUDED IN REMARK 210 THE BACK-CALCULATION AND NO COORDINATES ARE PRESENTED FOR THEM REMARK 210 IN THIS ENTRY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 DA A 11 REMARK 465 DA B 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA A 1 P DA A 1 OP2 0.118 REMARK 500 DA A 1 P DA A 1 OP3 -0.121 REMARK 500 DT A 2 C5 DT A 2 C6 0.054 REMARK 500 DG A 3 O3' DG A 3 C3' -0.047 REMARK 500 DA A 4 O4' DA A 4 C1' -0.105 REMARK 500 DG A 5 C3' DG A 5 C2' 0.090 REMARK 500 DG A 7 O3' DG A 7 C3' -0.053 REMARK 500 DA A 8 O4' DA A 8 C1' -0.112 REMARK 500 DA A 9 O3' DA A 9 C3' -0.046 REMARK 500 DT A 10 C5 DT A 10 C6 0.052 REMARK 500 DA B 11 P DA B 11 OP2 0.119 REMARK 500 DA B 11 P DA B 11 OP3 -0.121 REMARK 500 DT B 12 C5 DT B 12 C6 0.055 REMARK 500 DG B 13 O3' DG B 13 C3' -0.046 REMARK 500 DA B 14 O4' DA B 14 C1' -0.105 REMARK 500 DG B 15 C3' DG B 15 C2' 0.091 REMARK 500 DG B 17 O3' DG B 17 C3' -0.052 REMARK 500 DA B 18 O4' DA B 18 C1' -0.113 REMARK 500 DA B 19 O3' DA B 19 C3' -0.046 REMARK 500 DT B 20 C5 DT B 20 C6 0.053 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 1 OP1 - P - OP2 ANGL. DEV. = -10.0 DEGREES REMARK 500 DA A 1 C3' - O3' - P ANGL. DEV. = 16.6 DEGREES REMARK 500 DT A 2 N1 - C2 - N3 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT A 2 C2 - N3 - C4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT A 2 C5 - C6 - N1 ANGL. DEV. = -3.7 DEGREES REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA A 4 C1' - O4' - C4' ANGL. DEV. = 4.4 DEGREES REMARK 500 DA A 4 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 DG A 5 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 DG A 5 O4' - C1' - N9 ANGL. DEV. = -6.9 DEGREES REMARK 500 DG A 5 C3' - O3' - P ANGL. DEV. = 15.0 DEGREES REMARK 500 DG A 7 C3' - O3' - P ANGL. DEV. = 10.4 DEGREES REMARK 500 DA A 8 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 DA A 8 C3' - O3' - P ANGL. DEV. = 11.6 DEGREES REMARK 500 DA A 9 C5' - C4' - O4' ANGL. DEV. = 7.5 DEGREES REMARK 500 DA A 9 O4' - C1' - N9 ANGL. DEV. = -8.3 DEGREES REMARK 500 DA A 9 C3' - O3' - P ANGL. DEV. = 11.2 DEGREES REMARK 500 DT A 10 O4' - C1' - N1 ANGL. DEV. = -6.2 DEGREES REMARK 500 DT A 10 C2 - N3 - C4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT A 10 C5 - C6 - N1 ANGL. DEV. = -3.8 DEGREES REMARK 500 DA B 11 OP1 - P - OP2 ANGL. DEV. = -10.1 DEGREES REMARK 500 DA B 11 C3' - O3' - P ANGL. DEV. = 16.5 DEGREES REMARK 500 DT B 12 N1 - C2 - N3 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT B 12 C2 - N3 - C4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT B 12 C5 - C6 - N1 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG B 13 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA B 14 C1' - O4' - C4' ANGL. DEV. = 4.3 DEGREES REMARK 500 DA B 14 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 DG B 15 C5' - C4' - O4' ANGL. DEV. = 6.6 DEGREES REMARK 500 DG B 15 O4' - C1' - N9 ANGL. DEV. = -6.9 DEGREES REMARK 500 DG B 15 C3' - O3' - P ANGL. DEV. = 15.1 DEGREES REMARK 500 DG B 17 C3' - O3' - P ANGL. DEV. = 10.4 DEGREES REMARK 500 DA B 18 O4' - C1' - N9 ANGL. DEV. = 7.7 DEGREES REMARK 500 DA B 18 C3' - O3' - P ANGL. DEV. = 11.7 DEGREES REMARK 500 DA B 19 C5' - C4' - O4' ANGL. DEV. = 7.5 DEGREES REMARK 500 DA B 19 O4' - C1' - N9 ANGL. DEV. = -8.3 DEGREES REMARK 500 DA B 19 C3' - O3' - P ANGL. DEV. = 11.3 DEGREES REMARK 500 DT B 20 O4' - C1' - N1 ANGL. DEV. = -6.1 DEGREES REMARK 500 DT B 20 C2 - N3 - C4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT B 20 C5 - C6 - N1 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 1D69 A 1 11 PDB 1D69 1D69 1 11 DBREF 1D69 B 11 21 PDB 1D69 1D69 11 21 SEQRES 1 A 11 DA DT DG DA DG DC DG DA DA DT DA SEQRES 1 B 11 DA DT DG DA DG DC DG DA DA DT DA CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000