data_1D6P
#
_entry.id 1D6P
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.399
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1D6P pdb_00001d6p 10.2210/pdb1d6p/pdb
RCSB RCSB009841 ? ?
WWPDB D_1000009841 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2000-01-21
2 'Structure model' 1 1 2007-10-16
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2017-10-04
5 'Structure model' 1 4 2018-04-18
6 'Structure model' 2 0 2020-07-29
7 'Structure model' 2 1 2021-11-03
8 'Structure model' 3 0 2024-12-25
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Non-polymer description'
3 3 'Structure model' 'Version format compliance'
4 4 'Structure model' 'Refinement description'
5 5 'Structure model' 'Data collection'
6 6 'Structure model' 'Atomic model'
7 6 'Structure model' 'Data collection'
8 6 'Structure model' 'Derived calculations'
9 6 'Structure model' 'Structure summary'
10 7 'Structure model' 'Database references'
11 7 'Structure model' 'Structure summary'
12 8 'Structure model' Advisory
13 8 'Structure model' 'Atomic model'
14 8 'Structure model' 'Data collection'
15 8 'Structure model' 'Derived calculations'
16 8 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 4 'Structure model' software
2 5 'Structure model' diffrn_detector
3 6 'Structure model' atom_site
4 6 'Structure model' chem_comp
5 6 'Structure model' entity
6 6 'Structure model' pdbx_branch_scheme
7 6 'Structure model' pdbx_chem_comp_identifier
8 6 'Structure model' pdbx_entity_branch
9 6 'Structure model' pdbx_entity_branch_descriptor
10 6 'Structure model' pdbx_entity_branch_link
11 6 'Structure model' pdbx_entity_branch_list
12 6 'Structure model' pdbx_entity_nonpoly
13 6 'Structure model' pdbx_nonpoly_scheme
14 6 'Structure model' pdbx_struct_assembly_gen
15 6 'Structure model' struct_asym
16 6 'Structure model' struct_conn
17 6 'Structure model' struct_site
18 6 'Structure model' struct_site_gen
19 7 'Structure model' chem_comp
20 7 'Structure model' database_2
21 7 'Structure model' struct_ref_seq_dif
22 8 'Structure model' atom_site
23 8 'Structure model' chem_comp_atom
24 8 'Structure model' chem_comp_bond
25 8 'Structure model' pdbx_entry_details
26 8 'Structure model' pdbx_modification_feature
27 8 'Structure model' pdbx_nonpoly_scheme
28 8 'Structure model' pdbx_unobs_or_zero_occ_atoms
29 8 'Structure model' pdbx_validate_close_contact
30 8 'Structure model' struct_conn
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_software.name'
2 5 'Structure model' '_diffrn_detector.detector'
3 6 'Structure model' '_atom_site.B_iso_or_equiv'
4 6 'Structure model' '_atom_site.Cartn_x'
5 6 'Structure model' '_atom_site.Cartn_y'
6 6 'Structure model' '_atom_site.Cartn_z'
7 6 'Structure model' '_atom_site.auth_asym_id'
8 6 'Structure model' '_atom_site.auth_seq_id'
9 6 'Structure model' '_atom_site.label_asym_id'
10 6 'Structure model' '_chem_comp.name'
11 6 'Structure model' '_chem_comp.type'
12 6 'Structure model' '_entity.formula_weight'
13 6 'Structure model' '_entity.pdbx_description'
14 6 'Structure model' '_entity.pdbx_number_of_molecules'
15 6 'Structure model' '_entity.type'
16 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
17 6 'Structure model' '_struct_conn.pdbx_dist_value'
18 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
19 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
20 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
21 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
22 6 'Structure model' '_struct_conn.ptnr1_label_asym_id'
23 6 'Structure model' '_struct_conn.ptnr1_label_atom_id'
24 6 'Structure model' '_struct_conn.ptnr1_label_comp_id'
25 6 'Structure model' '_struct_conn.ptnr1_label_seq_id'
26 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
27 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
28 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
29 6 'Structure model' '_struct_conn.ptnr2_label_asym_id'
30 6 'Structure model' '_struct_conn.ptnr2_label_atom_id'
31 6 'Structure model' '_struct_conn.ptnr2_label_comp_id'
32 7 'Structure model' '_chem_comp.pdbx_synonyms'
33 7 'Structure model' '_database_2.pdbx_DOI'
34 7 'Structure model' '_database_2.pdbx_database_accession'
35 7 'Structure model' '_struct_ref_seq_dif.details'
36 8 'Structure model' '_atom_site.B_iso_or_equiv'
37 8 'Structure model' '_atom_site.Cartn_x'
38 8 'Structure model' '_atom_site.Cartn_y'
39 8 'Structure model' '_atom_site.Cartn_z'
40 8 'Structure model' '_atom_site.auth_seq_id'
41 8 'Structure model' '_pdbx_nonpoly_scheme.auth_seq_num'
42 8 'Structure model' '_pdbx_nonpoly_scheme.pdb_seq_num'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1D6P
_pdbx_database_status.recvd_initial_deposition_date 1999-10-15
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.SG_entry .
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 1REY
;HUMAN LYSOZYME (WILD TYPE) LABELLED WITH 2',3'-EPOXYPROPYL GLYCOSIDE OF N,N'-DIACETYL CHITOBIOSE
;
unspecified
PDB 1D6Q 'HUMAN LYSOZYME D102E MUTANT' unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Muraki, M.' 1
'Harata, K.' 2
'Sugita, N.' 3
'Sato, K.' 4
#
loop_
_citation.id
_citation.title
_citation.journal_abbrev
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_citation.journal_id_ASTM
_citation.country
_citation.journal_id_ISSN
_citation.journal_id_CSD
_citation.book_publisher
_citation.pdbx_database_id_PubMed
_citation.pdbx_database_id_DOI
primary 'Protein-carbohydrate interactions in human lysozyme probed by combining site-directed mutagenesis and affinity labeling.'
Biochemistry 39 292 299 2000 BICHAW US 0006-2960 0033 ? 10630988 10.1021/bi991402q
1
;Dual Affinity Labeling of the Active Site of Human Lysozyme with an N-Acetyllactosamine Derivative: First Ligand Assisted Recognition of the Second Ligand
;
Biochemistry 38 540 548 1999 BICHAW US 0006-2960 0033 ? ? 10.1021/bi981779g
2
;X-ray Structure of Human Lysozyme Labelled with 2',3'-Epoxypropyl b-Glycoside of Man-b1,4-GlcNAc. Structural Change and Recognition Specificity at Subsite B
;
'Acta Crystallogr.,Sect.D' 54 834 843 1998 ABCRE6 DK 0907-4449 0766 ? ? 10.1107/S090744499800122X
3 'Origin of Carbohydrate Recognition Specificity of Human Lysozyme Revealed by Affinity Labeling' Biochemistry 35 13562
13567 1996 BICHAW US 0006-2960 0033 ? ? 10.1021/bi9613180
4 'Dissection of the Functional Role of Structural Elements of Tyrosine-63 in the Catalytic Action of Human Lysozyme'
Biochemistry 31 9212 9219 1992 BICHAW US 0006-2960 0033 ? ? ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Muraki, M.' 1 ?
primary 'Harata, K.' 2 ?
primary 'Sugita, N.' 3 ?
primary 'Sato, K.I.' 4 ?
1 'Muraki, M.' 5 ?
1 'Harata, K.' 6 ?
1 'Sugita, N.' 7 ?
1 'Sato, K.' 8 ?
2 'Muraki, M.' 9 ?
2 'Harata, K.' 10 ?
2 'Sugita, N.' 11 ?
2 'Sato, K.' 12 ?
3 'Muraki, M.' 13 ?
3 'Harata, K.' 14 ?
3 'Sugita, N.' 15 ?
3 'Sato, K.' 16 ?
4 'Muraki, M.' 17 ?
4 'Harata, K.' 18 ?
4 'Jigami, Y.' 19 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man LYSOZYME 14670.676 1 3.2.1.17
Y63L ? ?
2 branched man '2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 424.401 1 ?
? ? ?
3 non-polymer syn GLYCEROL 92.094 1 ?
? ? ?
4 water nat water 18.015 43 ?
? ? ?
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRLWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
;
_entity_poly.pdbx_seq_one_letter_code_can
;KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRLWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 GLYCEROL GOL
4 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 LYS n
1 2 VAL n
1 3 PHE n
1 4 GLU n
1 5 ARG n
1 6 CYS n
1 7 GLU n
1 8 LEU n
1 9 ALA n
1 10 ARG n
1 11 THR n
1 12 LEU n
1 13 LYS n
1 14 ARG n
1 15 LEU n
1 16 GLY n
1 17 MET n
1 18 ASP n
1 19 GLY n
1 20 TYR n
1 21 ARG n
1 22 GLY n
1 23 ILE n
1 24 SER n
1 25 LEU n
1 26 ALA n
1 27 ASN n
1 28 TRP n
1 29 MET n
1 30 CYS n
1 31 LEU n
1 32 ALA n
1 33 LYS n
1 34 TRP n
1 35 GLU n
1 36 SER n
1 37 GLY n
1 38 TYR n
1 39 ASN n
1 40 THR n
1 41 ARG n
1 42 ALA n
1 43 THR n
1 44 ASN n
1 45 TYR n
1 46 ASN n
1 47 ALA n
1 48 GLY n
1 49 ASP n
1 50 ARG n
1 51 SER n
1 52 THR n
1 53 ASP n
1 54 TYR n
1 55 GLY n
1 56 ILE n
1 57 PHE n
1 58 GLN n
1 59 ILE n
1 60 ASN n
1 61 SER n
1 62 ARG n
1 63 LEU n
1 64 TRP n
1 65 CYS n
1 66 ASN n
1 67 ASP n
1 68 GLY n
1 69 LYS n
1 70 THR n
1 71 PRO n
1 72 GLY n
1 73 ALA n
1 74 VAL n
1 75 ASN n
1 76 ALA n
1 77 CYS n
1 78 HIS n
1 79 LEU n
1 80 SER n
1 81 CYS n
1 82 SER n
1 83 ALA n
1 84 LEU n
1 85 LEU n
1 86 GLN n
1 87 ASP n
1 88 ASN n
1 89 ILE n
1 90 ALA n
1 91 ASP n
1 92 ALA n
1 93 VAL n
1 94 ALA n
1 95 CYS n
1 96 ALA n
1 97 LYS n
1 98 ARG n
1 99 VAL n
1 100 VAL n
1 101 ARG n
1 102 ASP n
1 103 PRO n
1 104 GLN n
1 105 GLY n
1 106 ILE n
1 107 ARG n
1 108 ALA n
1 109 TRP n
1 110 VAL n
1 111 ALA n
1 112 TRP n
1 113 ARG n
1 114 ASN n
1 115 ARG n
1 116 CYS n
1 117 GLN n
1 118 ASN n
1 119 ARG n
1 120 ASP n
1 121 VAL n
1 122 ARG n
1 123 GLN n
1 124 TYR n
1 125 VAL n
1 126 GLN n
1 127 GLY n
1 128 CYS n
1 129 GLY n
1 130 VAL n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus Homo
_entity_src_gen.pdbx_gene_src_gene ?
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name ?
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ?
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0
2 2 'WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1' WURCS PDB2Glycan 1.1.0
3 2 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}' LINUCS PDB-CARE ?
#
_pdbx_entity_branch_link.link_id 1
_pdbx_entity_branch_link.entity_id 2
_pdbx_entity_branch_link.entity_branch_list_num_1 2
_pdbx_entity_branch_link.comp_id_1 NAG
_pdbx_entity_branch_link.atom_id_1 C1
_pdbx_entity_branch_link.leaving_atom_id_1 O1
_pdbx_entity_branch_link.entity_branch_list_num_2 1
_pdbx_entity_branch_link.comp_id_2 NAG
_pdbx_entity_branch_link.atom_id_2 O4
_pdbx_entity_branch_link.leaving_atom_id_2 HO4
_pdbx_entity_branch_link.value_order sing
_pdbx_entity_branch_link.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3'
92.094
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 LYS 1 1 1 LYS LYS A . n
A 1 2 VAL 2 2 2 VAL VAL A . n
A 1 3 PHE 3 3 3 PHE PHE A . n
A 1 4 GLU 4 4 4 GLU GLU A . n
A 1 5 ARG 5 5 5 ARG ARG A . n
A 1 6 CYS 6 6 6 CYS CYS A . n
A 1 7 GLU 7 7 7 GLU GLU A . n
A 1 8 LEU 8 8 8 LEU LEU A . n
A 1 9 ALA 9 9 9 ALA ALA A . n
A 1 10 ARG 10 10 10 ARG ARG A . n
A 1 11 THR 11 11 11 THR THR A . n
A 1 12 LEU 12 12 12 LEU LEU A . n
A 1 13 LYS 13 13 13 LYS LYS A . n
A 1 14 ARG 14 14 14 ARG ARG A . n
A 1 15 LEU 15 15 15 LEU LEU A . n
A 1 16 GLY 16 16 16 GLY GLY A . n
A 1 17 MET 17 17 17 MET MET A . n
A 1 18 ASP 18 18 18 ASP ASP A . n
A 1 19 GLY 19 19 19 GLY GLY A . n
A 1 20 TYR 20 20 20 TYR TYR A . n
A 1 21 ARG 21 21 21 ARG ARG A . n
A 1 22 GLY 22 22 22 GLY GLY A . n
A 1 23 ILE 23 23 23 ILE ILE A . n
A 1 24 SER 24 24 24 SER SER A . n
A 1 25 LEU 25 25 25 LEU LEU A . n
A 1 26 ALA 26 26 26 ALA ALA A . n
A 1 27 ASN 27 27 27 ASN ASN A . n
A 1 28 TRP 28 28 28 TRP TRP A . n
A 1 29 MET 29 29 29 MET MET A . n
A 1 30 CYS 30 30 30 CYS CYS A . n
A 1 31 LEU 31 31 31 LEU LEU A . n
A 1 32 ALA 32 32 32 ALA ALA A . n
A 1 33 LYS 33 33 33 LYS LYS A . n
A 1 34 TRP 34 34 34 TRP TRP A . n
A 1 35 GLU 35 35 35 GLU GLU A . n
A 1 36 SER 36 36 36 SER SER A . n
A 1 37 GLY 37 37 37 GLY GLY A . n
A 1 38 TYR 38 38 38 TYR TYR A . n
A 1 39 ASN 39 39 39 ASN ASN A . n
A 1 40 THR 40 40 40 THR THR A . n
A 1 41 ARG 41 41 41 ARG ARG A . n
A 1 42 ALA 42 42 42 ALA ALA A . n
A 1 43 THR 43 43 43 THR THR A . n
A 1 44 ASN 44 44 44 ASN ASN A . n
A 1 45 TYR 45 45 45 TYR TYR A . n
A 1 46 ASN 46 46 46 ASN ASN A . n
A 1 47 ALA 47 47 47 ALA ALA A . n
A 1 48 GLY 48 48 48 GLY GLY A . n
A 1 49 ASP 49 49 49 ASP ASP A . n
A 1 50 ARG 50 50 50 ARG ARG A . n
A 1 51 SER 51 51 51 SER SER A . n
A 1 52 THR 52 52 52 THR THR A . n
A 1 53 ASP 53 53 53 ASP ASP A . n
A 1 54 TYR 54 54 54 TYR TYR A . n
A 1 55 GLY 55 55 55 GLY GLY A . n
A 1 56 ILE 56 56 56 ILE ILE A . n
A 1 57 PHE 57 57 57 PHE PHE A . n
A 1 58 GLN 58 58 58 GLN GLN A . n
A 1 59 ILE 59 59 59 ILE ILE A . n
A 1 60 ASN 60 60 60 ASN ASN A . n
A 1 61 SER 61 61 61 SER SER A . n
A 1 62 ARG 62 62 62 ARG ARG A . n
A 1 63 LEU 63 63 63 LEU LEU A . n
A 1 64 TRP 64 64 64 TRP TRP A . n
A 1 65 CYS 65 65 65 CYS CYS A . n
A 1 66 ASN 66 66 66 ASN ASN A . n
A 1 67 ASP 67 67 67 ASP ASP A . n
A 1 68 GLY 68 68 68 GLY GLY A . n
A 1 69 LYS 69 69 69 LYS LYS A . n
A 1 70 THR 70 70 70 THR THR A . n
A 1 71 PRO 71 71 71 PRO PRO A . n
A 1 72 GLY 72 72 72 GLY GLY A . n
A 1 73 ALA 73 73 73 ALA ALA A . n
A 1 74 VAL 74 74 74 VAL VAL A . n
A 1 75 ASN 75 75 75 ASN ASN A . n
A 1 76 ALA 76 76 76 ALA ALA A . n
A 1 77 CYS 77 77 77 CYS CYS A . n
A 1 78 HIS 78 78 78 HIS HIS A . n
A 1 79 LEU 79 79 79 LEU LEU A . n
A 1 80 SER 80 80 80 SER SER A . n
A 1 81 CYS 81 81 81 CYS CYS A . n
A 1 82 SER 82 82 82 SER SER A . n
A 1 83 ALA 83 83 83 ALA ALA A . n
A 1 84 LEU 84 84 84 LEU LEU A . n
A 1 85 LEU 85 85 85 LEU LEU A . n
A 1 86 GLN 86 86 86 GLN GLN A . n
A 1 87 ASP 87 87 87 ASP ASP A . n
A 1 88 ASN 88 88 88 ASN ASN A . n
A 1 89 ILE 89 89 89 ILE ILE A . n
A 1 90 ALA 90 90 90 ALA ALA A . n
A 1 91 ASP 91 91 91 ASP ASP A . n
A 1 92 ALA 92 92 92 ALA ALA A . n
A 1 93 VAL 93 93 93 VAL VAL A . n
A 1 94 ALA 94 94 94 ALA ALA A . n
A 1 95 CYS 95 95 95 CYS CYS A . n
A 1 96 ALA 96 96 96 ALA ALA A . n
A 1 97 LYS 97 97 97 LYS LYS A . n
A 1 98 ARG 98 98 98 ARG ARG A . n
A 1 99 VAL 99 99 99 VAL VAL A . n
A 1 100 VAL 100 100 100 VAL VAL A . n
A 1 101 ARG 101 101 101 ARG ARG A . n
A 1 102 ASP 102 102 102 ASP ASP A . n
A 1 103 PRO 103 103 103 PRO PRO A . n
A 1 104 GLN 104 104 104 GLN GLN A . n
A 1 105 GLY 105 105 105 GLY GLY A . n
A 1 106 ILE 106 106 106 ILE ILE A . n
A 1 107 ARG 107 107 107 ARG ARG A . n
A 1 108 ALA 108 108 108 ALA ALA A . n
A 1 109 TRP 109 109 109 TRP TRP A . n
A 1 110 VAL 110 110 110 VAL VAL A . n
A 1 111 ALA 111 111 111 ALA ALA A . n
A 1 112 TRP 112 112 112 TRP TRP A . n
A 1 113 ARG 113 113 113 ARG ARG A . n
A 1 114 ASN 114 114 114 ASN ASN A . n
A 1 115 ARG 115 115 115 ARG ARG A . n
A 1 116 CYS 116 116 116 CYS CYS A . n
A 1 117 GLN 117 117 117 GLN GLN A . n
A 1 118 ASN 118 118 118 ASN ASN A . n
A 1 119 ARG 119 119 119 ARG ARG A . n
A 1 120 ASP 120 120 120 ASP ASP A . n
A 1 121 VAL 121 121 121 VAL VAL A . n
A 1 122 ARG 122 122 122 ARG ARG A . n
A 1 123 GLN 123 123 123 GLN GLN A . n
A 1 124 TYR 124 124 124 TYR TYR A . n
A 1 125 VAL 125 125 125 VAL VAL A . n
A 1 126 GLN 126 126 126 GLN GLN A . n
A 1 127 GLY 127 127 127 GLY GLY A . n
A 1 128 CYS 128 128 128 CYS CYS A . n
A 1 129 GLY 129 129 129 GLY GLY A . n
A 1 130 VAL 130 130 130 VAL VAL A . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 NAG 1 B NAG 1 ? NAG 132 n
B 2 NAG 2 B NAG 2 ? NAG 131 n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL 1 201 133 GOL GOL A .
D 4 HOH 1 301 163 HOH HOH A .
D 4 HOH 2 302 168 HOH HOH A .
D 4 HOH 3 303 166 HOH HOH A .
D 4 HOH 4 304 149 HOH HOH A .
D 4 HOH 5 305 151 HOH HOH A .
D 4 HOH 6 306 142 HOH HOH A .
D 4 HOH 7 307 150 HOH HOH A .
D 4 HOH 8 308 173 HOH HOH A .
D 4 HOH 9 309 141 HOH HOH A .
D 4 HOH 10 310 134 HOH HOH A .
D 4 HOH 11 311 138 HOH HOH A .
D 4 HOH 12 312 148 HOH HOH A .
D 4 HOH 13 313 143 HOH HOH A .
D 4 HOH 14 314 164 HOH HOH A .
D 4 HOH 15 315 156 HOH HOH A .
D 4 HOH 16 316 140 HOH HOH A .
D 4 HOH 17 317 169 HOH HOH A .
D 4 HOH 18 318 172 HOH HOH A .
D 4 HOH 19 319 135 HOH HOH A .
D 4 HOH 20 320 171 HOH HOH A .
D 4 HOH 21 321 157 HOH HOH A .
D 4 HOH 22 322 147 HOH HOH A .
D 4 HOH 23 323 139 HOH HOH A .
D 4 HOH 24 324 144 HOH HOH A .
D 4 HOH 25 325 155 HOH HOH A .
D 4 HOH 26 326 146 HOH HOH A .
D 4 HOH 27 327 154 HOH HOH A .
D 4 HOH 28 328 152 HOH HOH A .
D 4 HOH 29 329 145 HOH HOH A .
D 4 HOH 30 330 170 HOH HOH A .
D 4 HOH 31 331 159 HOH HOH A .
D 4 HOH 32 332 167 HOH HOH A .
D 4 HOH 33 333 162 HOH HOH A .
D 4 HOH 34 334 137 HOH HOH A .
D 4 HOH 35 335 165 HOH HOH A .
D 4 HOH 36 336 136 HOH HOH A .
D 4 HOH 37 337 153 HOH HOH A .
D 4 HOH 38 338 158 HOH HOH A .
D 4 HOH 39 339 175 HOH HOH A .
D 4 HOH 40 340 161 HOH HOH A .
D 4 HOH 41 341 160 HOH HOH A .
D 4 HOH 42 342 174 HOH HOH A .
D 4 HOH 43 343 176 HOH HOH A .
#
_pdbx_unobs_or_zero_occ_atoms.id 1
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1
_pdbx_unobs_or_zero_occ_atoms.polymer_flag N
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id A
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id GOL
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 201
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id O3
_pdbx_unobs_or_zero_occ_atoms.label_alt_id ?
_pdbx_unobs_or_zero_occ_atoms.label_asym_id C
_pdbx_unobs_or_zero_occ_atoms.label_comp_id GOL
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 1
_pdbx_unobs_or_zero_occ_atoms.label_atom_id O3
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
MADNESS 'data collection' . ? 1
MERGEF 'data reduction' '(BY K.HARATA)' ? 2
X-PLOR 'model building' . ? 3
X-PLOR refinement 3.1 ? 4
MADNESS 'data reduction' . ? 5
MERGEF 'data scaling' '(K.HARATA)' ? 6
X-PLOR phasing . ? 7
#
_cell.entry_id 1D6P
_cell.length_a 58.20
_cell.length_b 60.78
_cell.length_c 32.73
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1D6P
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1D6P
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 37.65
_exptl_crystal.density_Matthews 1.97
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP'
_exptl_crystal_grow.temp 298.0
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 4.5
_exptl_crystal_grow.pdbx_details '5M NH4NO3 IN 10 MM NAOAC(PH 4.5), VAPOR DIFFUSION, SITTING DROP, temperature 298.0K'
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 288.0
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector DIFFRACTOMETER
_diffrn_detector.type 'ENRAF-NONIUS FAST'
_diffrn_detector.pdbx_collection_date 1999-05-10
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.5148
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source 'ROTATING ANODE'
_diffrn_source.type 'ENRAF-NONIUS FR571'
_diffrn_source.pdbx_synchrotron_site ?
_diffrn_source.pdbx_synchrotron_beamline ?
_diffrn_source.pdbx_wavelength 1.5148
_diffrn_source.pdbx_wavelength_list ?
#
_reflns.entry_id 1D6P
_reflns.observed_criterion_sigma_I ?
_reflns.observed_criterion_sigma_F 0.0
_reflns.d_resolution_low 22.27
_reflns.d_resolution_high 2.23
_reflns.number_obs 40267
_reflns.number_all 52931
_reflns.percent_possible_obs ?
_reflns.pdbx_Rmerge_I_obs 0.1
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI ?
_reflns.B_iso_Wilson_estimate ?
_reflns.pdbx_redundancy 3.4
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 2.23
_reflns_shell.d_res_low 2.32
_reflns_shell.percent_possible_all ?
_reflns_shell.Rmerge_I_obs 0.293
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs ?
_reflns_shell.pdbx_redundancy ?
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 1D6P
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all 3865
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 2
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 8.0
_refine.ls_d_res_high 2.23
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.181
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.181
_refine.ls_R_factor_R_free 0.216
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details '98.3 % COMPLETENESS OF DATA'
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.pdbx_overall_phase_error ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1025
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 33
_refine_hist.number_atoms_solvent 43
_refine_hist.number_atoms_total 1101
_refine_hist.d_res_high 2.23
_refine_hist.d_res_low 8.0
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg 1.87 ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ?
x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ?
x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ?
#
_database_PDB_matrix.entry_id 1D6P
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1D6P
_struct.title
;HUMAN LYSOZYME L63 MUTANT LABELLED WITH 2',3'-EPOXYPROPYL N,N'-DIACETYLCHITOBIOSE
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1D6P
_struct_keywords.pdbx_keywords HYDROLASE
_struct_keywords.text
;LYSOZYME, MURAMIDASE, HYDROLASE (O-GLYCOSYL), SITE-DIRECTED MUTAGENESIS, N, N'-DIACETYLCHITOBIOSE, AFFINITY LABELING, HYDROLASE
;
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code LYSC_HUMAN
_struct_ref.entity_id 1
_struct_ref.pdbx_db_accession P00695
_struct_ref.pdbx_align_begin ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1D6P
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 130
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P00695
_struct_ref_seq.db_align_beg 19
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 148
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 130
#
_struct_ref_seq_dif.align_id 1
_struct_ref_seq_dif.pdbx_pdb_id_code 1D6P
_struct_ref_seq_dif.mon_id LEU
_struct_ref_seq_dif.pdbx_pdb_strand_id A
_struct_ref_seq_dif.seq_num 63
_struct_ref_seq_dif.pdbx_pdb_ins_code ?
_struct_ref_seq_dif.pdbx_seq_db_name UNP
_struct_ref_seq_dif.pdbx_seq_db_accession_code P00695
_struct_ref_seq_dif.db_mon_id TYR
_struct_ref_seq_dif.pdbx_seq_db_seq_num 81
_struct_ref_seq_dif.details 'engineered mutation'
_struct_ref_seq_dif.pdbx_auth_seq_num 63
_struct_ref_seq_dif.pdbx_ordinal 1
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 GLU A 4 ? LEU A 15 ? GLU A 4 LEU A 15 1 ? 12
HELX_P HELX_P2 2 SER A 24 ? GLY A 37 ? SER A 24 GLY A 37 1 ? 14
HELX_P HELX_P3 3 SER A 82 ? LEU A 85 ? SER A 82 LEU A 85 5 ? 4
HELX_P HELX_P4 4 ILE A 89 ? ASP A 102 ? ILE A 89 ASP A 102 1 ? 14
HELX_P HELX_P5 5 GLN A 104 ? ALA A 108 ? GLN A 104 ALA A 108 5 ? 5
HELX_P HELX_P6 6 TRP A 109 ? CYS A 116 ? TRP A 109 CYS A 116 1 ? 8
HELX_P HELX_P7 7 VAL A 121 ? VAL A 125 ? VAL A 121 VAL A 125 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 128 SG ? ? A CYS 6 A CYS 128 1_555 ? ? ? ? ? ? ? 2.034 ? ?
disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 116 SG ? ? A CYS 30 A CYS 116 1_555 ? ? ? ? ? ? ? 2.023 ? ?
disulf3 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 65 A CYS 81 1_555 ? ? ? ? ? ? ? 2.027 ? ?
disulf4 disulf ? ? A CYS 77 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 77 A CYS 95 1_555 ? ? ? ? ? ? ? 2.023 ? ?
covale1 covale one ? C GOL . O1 ? ? ? 1_555 B NAG . C1 ? ? A GOL 201 B NAG 1 1_555 ? ? ? ? ? ? ? 1.363 ? ?
covale2 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.370 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 CYS A 6 ? CYS A 128 ? CYS A 6 ? 1_555 CYS A 128 ? 1_555 SG SG . . . None 'Disulfide bridge'
2 CYS A 30 ? CYS A 116 ? CYS A 30 ? 1_555 CYS A 116 ? 1_555 SG SG . . . None 'Disulfide bridge'
3 CYS A 65 ? CYS A 81 ? CYS A 65 ? 1_555 CYS A 81 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 77 ? CYS A 95 ? CYS A 77 ? 1_555 CYS A 95 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 3 ?
B ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
B 1 2 ? parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 THR A 43 ? ASN A 46 ? THR A 43 ASN A 46
A 2 SER A 51 ? TYR A 54 ? SER A 51 TYR A 54
A 3 ILE A 59 ? ASN A 60 ? ILE A 59 ASN A 60
B 1 CYS A 65 ? ASN A 66 ? CYS A 65 ASN A 66
B 2 LEU A 79 ? SER A 80 ? LEU A 79 SER A 80
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N ASN A 46 ? N ASN A 46 O SER A 51 ? O SER A 51
A 2 3 O TYR A 54 ? O TYR A 54 N ILE A 59 ? N ILE A 59
B 1 2 N ASN A 66 ? N ASN A 66 O LEU A 79 ? O LEU A 79
#
_pdbx_entry_details.entry_id 1D6P
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 OD1
_pdbx_validate_close_contact.auth_asym_id_1 A
_pdbx_validate_close_contact.auth_comp_id_1 ASP
_pdbx_validate_close_contact.auth_seq_id_1 53
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 C3
_pdbx_validate_close_contact.auth_asym_id_2 A
_pdbx_validate_close_contact.auth_comp_id_2 GOL
_pdbx_validate_close_contact.auth_seq_id_2 201
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 1.47
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 CA A LEU 63 ? ? CB A LEU 63 ? ? CG A LEU 63 ? ? 132.48 115.30 17.18 2.30 N
2 1 C A THR 70 ? ? N A PRO 71 ? ? CA A PRO 71 ? ? 128.66 119.30 9.36 1.50 Y
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id GLN
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 58
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi 36.14
_pdbx_validate_torsion.psi 72.47
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
GOL C1 C N N 137
GOL O1 O N N 138
GOL C2 C N N 139
GOL O2 O N N 140
GOL C3 C N N 141
GOL O3 O N N 142
GOL H11 H N N 143
GOL H12 H N N 144
GOL HO1 H N N 145
GOL H2 H N N 146
GOL HO2 H N N 147
GOL H31 H N N 148
GOL H32 H N N 149
GOL HO3 H N N 150
HIS N N N N 151
HIS CA C N S 152
HIS C C N N 153
HIS O O N N 154
HIS CB C N N 155
HIS CG C Y N 156
HIS ND1 N Y N 157
HIS CD2 C Y N 158
HIS CE1 C Y N 159
HIS NE2 N Y N 160
HIS OXT O N N 161
HIS H H N N 162
HIS H2 H N N 163
HIS HA H N N 164
HIS HB2 H N N 165
HIS HB3 H N N 166
HIS HD1 H N N 167
HIS HD2 H N N 168
HIS HE1 H N N 169
HIS HE2 H N N 170
HIS HXT H N N 171
HOH O O N N 172
HOH H1 H N N 173
HOH H2 H N N 174
ILE N N N N 175
ILE CA C N S 176
ILE C C N N 177
ILE O O N N 178
ILE CB C N S 179
ILE CG1 C N N 180
ILE CG2 C N N 181
ILE CD1 C N N 182
ILE OXT O N N 183
ILE H H N N 184
ILE H2 H N N 185
ILE HA H N N 186
ILE HB H N N 187
ILE HG12 H N N 188
ILE HG13 H N N 189
ILE HG21 H N N 190
ILE HG22 H N N 191
ILE HG23 H N N 192
ILE HD11 H N N 193
ILE HD12 H N N 194
ILE HD13 H N N 195
ILE HXT H N N 196
LEU N N N N 197
LEU CA C N S 198
LEU C C N N 199
LEU O O N N 200
LEU CB C N N 201
LEU CG C N N 202
LEU CD1 C N N 203
LEU CD2 C N N 204
LEU OXT O N N 205
LEU H H N N 206
LEU H2 H N N 207
LEU HA H N N 208
LEU HB2 H N N 209
LEU HB3 H N N 210
LEU HG H N N 211
LEU HD11 H N N 212
LEU HD12 H N N 213
LEU HD13 H N N 214
LEU HD21 H N N 215
LEU HD22 H N N 216
LEU HD23 H N N 217
LEU HXT H N N 218
LYS N N N N 219
LYS CA C N S 220
LYS C C N N 221
LYS O O N N 222
LYS CB C N N 223
LYS CG C N N 224
LYS CD C N N 225
LYS CE C N N 226
LYS NZ N N N 227
LYS OXT O N N 228
LYS H H N N 229
LYS H2 H N N 230
LYS HA H N N 231
LYS HB2 H N N 232
LYS HB3 H N N 233
LYS HG2 H N N 234
LYS HG3 H N N 235
LYS HD2 H N N 236
LYS HD3 H N N 237
LYS HE2 H N N 238
LYS HE3 H N N 239
LYS HZ1 H N N 240
LYS HZ2 H N N 241
LYS HZ3 H N N 242
LYS HXT H N N 243
MET N N N N 244
MET CA C N S 245
MET C C N N 246
MET O O N N 247
MET CB C N N 248
MET CG C N N 249
MET SD S N N 250
MET CE C N N 251
MET OXT O N N 252
MET H H N N 253
MET H2 H N N 254
MET HA H N N 255
MET HB2 H N N 256
MET HB3 H N N 257
MET HG2 H N N 258
MET HG3 H N N 259
MET HE1 H N N 260
MET HE2 H N N 261
MET HE3 H N N 262
MET HXT H N N 263
NAG C1 C N R 264
NAG C2 C N R 265
NAG C3 C N R 266
NAG C4 C N S 267
NAG C5 C N R 268
NAG C6 C N N 269
NAG C7 C N N 270
NAG C8 C N N 271
NAG N2 N N N 272
NAG O1 O N N 273
NAG O3 O N N 274
NAG O4 O N N 275
NAG O5 O N N 276
NAG O6 O N N 277
NAG O7 O N N 278
NAG H1 H N N 279
NAG H2 H N N 280
NAG H3 H N N 281
NAG H4 H N N 282
NAG H5 H N N 283
NAG H61 H N N 284
NAG H62 H N N 285
NAG H81 H N N 286
NAG H82 H N N 287
NAG H83 H N N 288
NAG HN2 H N N 289
NAG HO1 H N N 290
NAG HO3 H N N 291
NAG HO4 H N N 292
NAG HO6 H N N 293
PHE N N N N 294
PHE CA C N S 295
PHE C C N N 296
PHE O O N N 297
PHE CB C N N 298
PHE CG C Y N 299
PHE CD1 C Y N 300
PHE CD2 C Y N 301
PHE CE1 C Y N 302
PHE CE2 C Y N 303
PHE CZ C Y N 304
PHE OXT O N N 305
PHE H H N N 306
PHE H2 H N N 307
PHE HA H N N 308
PHE HB2 H N N 309
PHE HB3 H N N 310
PHE HD1 H N N 311
PHE HD2 H N N 312
PHE HE1 H N N 313
PHE HE2 H N N 314
PHE HZ H N N 315
PHE HXT H N N 316
PRO N N N N 317
PRO CA C N S 318
PRO C C N N 319
PRO O O N N 320
PRO CB C N N 321
PRO CG C N N 322
PRO CD C N N 323
PRO OXT O N N 324
PRO H H N N 325
PRO HA H N N 326
PRO HB2 H N N 327
PRO HB3 H N N 328
PRO HG2 H N N 329
PRO HG3 H N N 330
PRO HD2 H N N 331
PRO HD3 H N N 332
PRO HXT H N N 333
SER N N N N 334
SER CA C N S 335
SER C C N N 336
SER O O N N 337
SER CB C N N 338
SER OG O N N 339
SER OXT O N N 340
SER H H N N 341
SER H2 H N N 342
SER HA H N N 343
SER HB2 H N N 344
SER HB3 H N N 345
SER HG H N N 346
SER HXT H N N 347
THR N N N N 348
THR CA C N S 349
THR C C N N 350
THR O O N N 351
THR CB C N R 352
THR OG1 O N N 353
THR CG2 C N N 354
THR OXT O N N 355
THR H H N N 356
THR H2 H N N 357
THR HA H N N 358
THR HB H N N 359
THR HG1 H N N 360
THR HG21 H N N 361
THR HG22 H N N 362
THR HG23 H N N 363
THR HXT H N N 364
TRP N N N N 365
TRP CA C N S 366
TRP C C N N 367
TRP O O N N 368
TRP CB C N N 369
TRP CG C Y N 370
TRP CD1 C Y N 371
TRP CD2 C Y N 372
TRP NE1 N Y N 373
TRP CE2 C Y N 374
TRP CE3 C Y N 375
TRP CZ2 C Y N 376
TRP CZ3 C Y N 377
TRP CH2 C Y N 378
TRP OXT O N N 379
TRP H H N N 380
TRP H2 H N N 381
TRP HA H N N 382
TRP HB2 H N N 383
TRP HB3 H N N 384
TRP HD1 H N N 385
TRP HE1 H N N 386
TRP HE3 H N N 387
TRP HZ2 H N N 388
TRP HZ3 H N N 389
TRP HH2 H N N 390
TRP HXT H N N 391
TYR N N N N 392
TYR CA C N S 393
TYR C C N N 394
TYR O O N N 395
TYR CB C N N 396
TYR CG C Y N 397
TYR CD1 C Y N 398
TYR CD2 C Y N 399
TYR CE1 C Y N 400
TYR CE2 C Y N 401
TYR CZ C Y N 402
TYR OH O N N 403
TYR OXT O N N 404
TYR H H N N 405
TYR H2 H N N 406
TYR HA H N N 407
TYR HB2 H N N 408
TYR HB3 H N N 409
TYR HD1 H N N 410
TYR HD2 H N N 411
TYR HE1 H N N 412
TYR HE2 H N N 413
TYR HH H N N 414
TYR HXT H N N 415
VAL N N N N 416
VAL CA C N S 417
VAL C C N N 418
VAL O O N N 419
VAL CB C N N 420
VAL CG1 C N N 421
VAL CG2 C N N 422
VAL OXT O N N 423
VAL H H N N 424
VAL H2 H N N 425
VAL HA H N N 426
VAL HB H N N 427
VAL HG11 H N N 428
VAL HG12 H N N 429
VAL HG13 H N N 430
VAL HG21 H N N 431
VAL HG22 H N N 432
VAL HG23 H N N 433
VAL HXT H N N 434
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
GOL C1 O1 sing N N 129
GOL C1 C2 sing N N 130
GOL C1 H11 sing N N 131
GOL C1 H12 sing N N 132
GOL O1 HO1 sing N N 133
GOL C2 O2 sing N N 134
GOL C2 C3 sing N N 135
GOL C2 H2 sing N N 136
GOL O2 HO2 sing N N 137
GOL C3 O3 sing N N 138
GOL C3 H31 sing N N 139
GOL C3 H32 sing N N 140
GOL O3 HO3 sing N N 141
HIS N CA sing N N 142
HIS N H sing N N 143
HIS N H2 sing N N 144
HIS CA C sing N N 145
HIS CA CB sing N N 146
HIS CA HA sing N N 147
HIS C O doub N N 148
HIS C OXT sing N N 149
HIS CB CG sing N N 150
HIS CB HB2 sing N N 151
HIS CB HB3 sing N N 152
HIS CG ND1 sing Y N 153
HIS CG CD2 doub Y N 154
HIS ND1 CE1 doub Y N 155
HIS ND1 HD1 sing N N 156
HIS CD2 NE2 sing Y N 157
HIS CD2 HD2 sing N N 158
HIS CE1 NE2 sing Y N 159
HIS CE1 HE1 sing N N 160
HIS NE2 HE2 sing N N 161
HIS OXT HXT sing N N 162
HOH O H1 sing N N 163
HOH O H2 sing N N 164
ILE N CA sing N N 165
ILE N H sing N N 166
ILE N H2 sing N N 167
ILE CA C sing N N 168
ILE CA CB sing N N 169
ILE CA HA sing N N 170
ILE C O doub N N 171
ILE C OXT sing N N 172
ILE CB CG1 sing N N 173
ILE CB CG2 sing N N 174
ILE CB HB sing N N 175
ILE CG1 CD1 sing N N 176
ILE CG1 HG12 sing N N 177
ILE CG1 HG13 sing N N 178
ILE CG2 HG21 sing N N 179
ILE CG2 HG22 sing N N 180
ILE CG2 HG23 sing N N 181
ILE CD1 HD11 sing N N 182
ILE CD1 HD12 sing N N 183
ILE CD1 HD13 sing N N 184
ILE OXT HXT sing N N 185
LEU N CA sing N N 186
LEU N H sing N N 187
LEU N H2 sing N N 188
LEU CA C sing N N 189
LEU CA CB sing N N 190
LEU CA HA sing N N 191
LEU C O doub N N 192
LEU C OXT sing N N 193
LEU CB CG sing N N 194
LEU CB HB2 sing N N 195
LEU CB HB3 sing N N 196
LEU CG CD1 sing N N 197
LEU CG CD2 sing N N 198
LEU CG HG sing N N 199
LEU CD1 HD11 sing N N 200
LEU CD1 HD12 sing N N 201
LEU CD1 HD13 sing N N 202
LEU CD2 HD21 sing N N 203
LEU CD2 HD22 sing N N 204
LEU CD2 HD23 sing N N 205
LEU OXT HXT sing N N 206
LYS N CA sing N N 207
LYS N H sing N N 208
LYS N H2 sing N N 209
LYS CA C sing N N 210
LYS CA CB sing N N 211
LYS CA HA sing N N 212
LYS C O doub N N 213
LYS C OXT sing N N 214
LYS CB CG sing N N 215
LYS CB HB2 sing N N 216
LYS CB HB3 sing N N 217
LYS CG CD sing N N 218
LYS CG HG2 sing N N 219
LYS CG HG3 sing N N 220
LYS CD CE sing N N 221
LYS CD HD2 sing N N 222
LYS CD HD3 sing N N 223
LYS CE NZ sing N N 224
LYS CE HE2 sing N N 225
LYS CE HE3 sing N N 226
LYS NZ HZ1 sing N N 227
LYS NZ HZ2 sing N N 228
LYS NZ HZ3 sing N N 229
LYS OXT HXT sing N N 230
MET N CA sing N N 231
MET N H sing N N 232
MET N H2 sing N N 233
MET CA C sing N N 234
MET CA CB sing N N 235
MET CA HA sing N N 236
MET C O doub N N 237
MET C OXT sing N N 238
MET CB CG sing N N 239
MET CB HB2 sing N N 240
MET CB HB3 sing N N 241
MET CG SD sing N N 242
MET CG HG2 sing N N 243
MET CG HG3 sing N N 244
MET SD CE sing N N 245
MET CE HE1 sing N N 246
MET CE HE2 sing N N 247
MET CE HE3 sing N N 248
MET OXT HXT sing N N 249
NAG C1 C2 sing N N 250
NAG C1 O1 sing N N 251
NAG C1 O5 sing N N 252
NAG C1 H1 sing N N 253
NAG C2 C3 sing N N 254
NAG C2 N2 sing N N 255
NAG C2 H2 sing N N 256
NAG C3 C4 sing N N 257
NAG C3 O3 sing N N 258
NAG C3 H3 sing N N 259
NAG C4 C5 sing N N 260
NAG C4 O4 sing N N 261
NAG C4 H4 sing N N 262
NAG C5 C6 sing N N 263
NAG C5 O5 sing N N 264
NAG C5 H5 sing N N 265
NAG C6 O6 sing N N 266
NAG C6 H61 sing N N 267
NAG C6 H62 sing N N 268
NAG C7 C8 sing N N 269
NAG C7 N2 sing N N 270
NAG C7 O7 doub N N 271
NAG C8 H81 sing N N 272
NAG C8 H82 sing N N 273
NAG C8 H83 sing N N 274
NAG N2 HN2 sing N N 275
NAG O1 HO1 sing N N 276
NAG O3 HO3 sing N N 277
NAG O4 HO4 sing N N 278
NAG O6 HO6 sing N N 279
PHE N CA sing N N 280
PHE N H sing N N 281
PHE N H2 sing N N 282
PHE CA C sing N N 283
PHE CA CB sing N N 284
PHE CA HA sing N N 285
PHE C O doub N N 286
PHE C OXT sing N N 287
PHE CB CG sing N N 288
PHE CB HB2 sing N N 289
PHE CB HB3 sing N N 290
PHE CG CD1 doub Y N 291
PHE CG CD2 sing Y N 292
PHE CD1 CE1 sing Y N 293
PHE CD1 HD1 sing N N 294
PHE CD2 CE2 doub Y N 295
PHE CD2 HD2 sing N N 296
PHE CE1 CZ doub Y N 297
PHE CE1 HE1 sing N N 298
PHE CE2 CZ sing Y N 299
PHE CE2 HE2 sing N N 300
PHE CZ HZ sing N N 301
PHE OXT HXT sing N N 302
PRO N CA sing N N 303
PRO N CD sing N N 304
PRO N H sing N N 305
PRO CA C sing N N 306
PRO CA CB sing N N 307
PRO CA HA sing N N 308
PRO C O doub N N 309
PRO C OXT sing N N 310
PRO CB CG sing N N 311
PRO CB HB2 sing N N 312
PRO CB HB3 sing N N 313
PRO CG CD sing N N 314
PRO CG HG2 sing N N 315
PRO CG HG3 sing N N 316
PRO CD HD2 sing N N 317
PRO CD HD3 sing N N 318
PRO OXT HXT sing N N 319
SER N CA sing N N 320
SER N H sing N N 321
SER N H2 sing N N 322
SER CA C sing N N 323
SER CA CB sing N N 324
SER CA HA sing N N 325
SER C O doub N N 326
SER C OXT sing N N 327
SER CB OG sing N N 328
SER CB HB2 sing N N 329
SER CB HB3 sing N N 330
SER OG HG sing N N 331
SER OXT HXT sing N N 332
THR N CA sing N N 333
THR N H sing N N 334
THR N H2 sing N N 335
THR CA C sing N N 336
THR CA CB sing N N 337
THR CA HA sing N N 338
THR C O doub N N 339
THR C OXT sing N N 340
THR CB OG1 sing N N 341
THR CB CG2 sing N N 342
THR CB HB sing N N 343
THR OG1 HG1 sing N N 344
THR CG2 HG21 sing N N 345
THR CG2 HG22 sing N N 346
THR CG2 HG23 sing N N 347
THR OXT HXT sing N N 348
TRP N CA sing N N 349
TRP N H sing N N 350
TRP N H2 sing N N 351
TRP CA C sing N N 352
TRP CA CB sing N N 353
TRP CA HA sing N N 354
TRP C O doub N N 355
TRP C OXT sing N N 356
TRP CB CG sing N N 357
TRP CB HB2 sing N N 358
TRP CB HB3 sing N N 359
TRP CG CD1 doub Y N 360
TRP CG CD2 sing Y N 361
TRP CD1 NE1 sing Y N 362
TRP CD1 HD1 sing N N 363
TRP CD2 CE2 doub Y N 364
TRP CD2 CE3 sing Y N 365
TRP NE1 CE2 sing Y N 366
TRP NE1 HE1 sing N N 367
TRP CE2 CZ2 sing Y N 368
TRP CE3 CZ3 doub Y N 369
TRP CE3 HE3 sing N N 370
TRP CZ2 CH2 doub Y N 371
TRP CZ2 HZ2 sing N N 372
TRP CZ3 CH2 sing Y N 373
TRP CZ3 HZ3 sing N N 374
TRP CH2 HH2 sing N N 375
TRP OXT HXT sing N N 376
TYR N CA sing N N 377
TYR N H sing N N 378
TYR N H2 sing N N 379
TYR CA C sing N N 380
TYR CA CB sing N N 381
TYR CA HA sing N N 382
TYR C O doub N N 383
TYR C OXT sing N N 384
TYR CB CG sing N N 385
TYR CB HB2 sing N N 386
TYR CB HB3 sing N N 387
TYR CG CD1 doub Y N 388
TYR CG CD2 sing Y N 389
TYR CD1 CE1 sing Y N 390
TYR CD1 HD1 sing N N 391
TYR CD2 CE2 doub Y N 392
TYR CD2 HD2 sing N N 393
TYR CE1 CZ doub Y N 394
TYR CE1 HE1 sing N N 395
TYR CE2 CZ sing Y N 396
TYR CE2 HE2 sing N N 397
TYR CZ OH sing N N 398
TYR OH HH sing N N 399
TYR OXT HXT sing N N 400
VAL N CA sing N N 401
VAL N H sing N N 402
VAL N H2 sing N N 403
VAL CA C sing N N 404
VAL CA CB sing N N 405
VAL CA HA sing N N 406
VAL C O doub N N 407
VAL C OXT sing N N 408
VAL CB CG1 sing N N 409
VAL CB CG2 sing N N 410
VAL CB HB sing N N 411
VAL CG1 HG11 sing N N 412
VAL CG1 HG12 sing N N 413
VAL CG1 HG13 sing N N 414
VAL CG2 HG21 sing N N 415
VAL CG2 HG22 sing N N 416
VAL CG2 HG23 sing N N 417
VAL OXT HXT sing N N 418
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 NAG 1 n
2 NAG 2 n
#
_atom_sites.entry_id 1D6P
_atom_sites.fract_transf_matrix[1][1] 0.017182
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.016453
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.030553
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_