HEADER HYDROLASE 15-OCT-99 1D6T TITLE RNASE P PROTEIN FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE P; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE P PROTEIN; COMPND 5 EC: 3.1.26.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS ENDONUCLEASE, RNASE, SUBUNIT, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.SPITZFADEN REVDAT 4 16-FEB-22 1D6T 1 REMARK REVDAT 3 24-FEB-09 1D6T 1 VERSN REVDAT 2 27-OCT-00 1D6T 1 DBREF REVDAT 1 18-OCT-00 1D6T 0 JRNL AUTH C.SPITZFADEN,N.NICHOLSON,J.J.JONES,S.GUTH,R.LEHR, JRNL AUTH 2 C.D.PRESCOTT,L.A.HEGG,D.S.EGGLESTON JRNL TITL THE STRUCTURE OF RIBONUCLEASE P PROTEIN FROM STAPHYLOCOCCUS JRNL TITL 2 AUREUS REVEALS A UNIQUE BINDING SITE FOR SINGLE-STRANDED JRNL TITL 3 RNA. JRNL REF J.MOL.BIOL. V. 295 105 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10623511 JRNL DOI 10.1006/JMBI.1999.3341 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D6T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JAN-00. REMARK 100 THE DEPOSITION ID IS D_1000009845. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1.5MM RNASEP PROTEIN, U-15N,13C, REMARK 210 PH 6.0, (500MM SODIUM CHLORIDE, REMARK 210 20MM SODIUM ACETATE, 20MM SODIUM REMARK 210 PHOSPHATE) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 TYR A 7 OH REMARK 470 ARG A 8 NH1 NH2 REMARK 470 ARG A 17 NH1 NH2 REMARK 470 TYR A 19 OH REMARK 470 ARG A 28 NH1 NH2 REMARK 470 TYR A 33 OH REMARK 470 ARG A 44 NH1 NH2 REMARK 470 ARG A 59 NH1 NH2 REMARK 470 ARG A 64 NH1 NH2 REMARK 470 ARG A 67 NH1 NH2 REMARK 470 ARG A 87 NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 4 -146.57 -120.01 REMARK 500 1 ARG A 17 -73.47 -42.55 REMARK 500 1 LYS A 20 -79.21 -75.19 REMARK 500 1 VAL A 25 -142.90 -128.89 REMARK 500 1 ALA A 26 128.68 160.38 REMARK 500 1 ASN A 27 -87.87 -87.78 REMARK 500 1 GLN A 29 13.15 -140.39 REMARK 500 1 ASN A 36 95.04 48.75 REMARK 500 1 ASN A 37 -37.86 -38.76 REMARK 500 1 LYS A 38 73.78 -169.81 REMARK 500 1 ASP A 41 13.43 -146.85 REMARK 500 1 PHE A 43 88.82 -67.54 REMARK 500 1 ARG A 44 93.66 -51.70 REMARK 500 1 LEU A 53 -73.04 -35.95 REMARK 500 1 LYS A 80 49.27 159.64 REMARK 500 1 ASP A 81 111.17 34.80 REMARK 500 1 GLN A 88 -52.00 171.47 REMARK 500 1 HIS A 104 -77.60 -134.99 REMARK 500 1 LYS A 110 23.95 87.80 REMARK 500 1 LYS A 114 -43.20 -157.88 REMARK 500 1 LYS A 115 98.04 95.34 REMARK 500 2 GLU A 4 -156.86 -115.46 REMARK 500 2 TYR A 7 -33.97 -36.45 REMARK 500 2 ARG A 8 -169.01 -112.35 REMARK 500 2 LYS A 20 -87.47 -73.74 REMARK 500 2 VAL A 25 -144.47 -123.41 REMARK 500 2 ALA A 26 131.23 160.81 REMARK 500 2 ASN A 27 -95.35 -89.06 REMARK 500 2 GLN A 29 23.99 -140.77 REMARK 500 2 ASN A 36 80.57 42.04 REMARK 500 2 GLU A 39 39.05 179.42 REMARK 500 2 HIS A 42 176.70 177.84 REMARK 500 2 ARG A 44 125.41 -34.85 REMARK 500 2 LEU A 53 -75.56 -40.25 REMARK 500 2 ALA A 79 126.06 -39.16 REMARK 500 2 LYS A 80 110.62 162.26 REMARK 500 2 ARG A 87 -167.57 -52.87 REMARK 500 2 HIS A 104 -75.95 -133.90 REMARK 500 2 LYS A 110 17.14 88.56 REMARK 500 2 ASN A 113 -39.14 -37.40 REMARK 500 2 LYS A 114 -86.53 -159.82 REMARK 500 2 LYS A 115 88.71 179.50 REMARK 500 3 LEU A 2 -45.92 86.40 REMARK 500 3 GLU A 4 -160.75 -78.17 REMARK 500 3 LYS A 10 -34.11 174.52 REMARK 500 3 ARG A 17 -75.01 -41.68 REMARK 500 3 LYS A 20 -80.08 -72.96 REMARK 500 3 ASN A 27 -96.85 -74.20 REMARK 500 3 GLN A 29 50.13 -144.11 REMARK 500 3 PHE A 30 143.09 177.89 REMARK 500 REMARK 500 THIS ENTRY HAS 454 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1D6T A 1 117 UNP P0A0H5 RNPA_STAAU 1 117 SEQRES 1 A 117 MET LEU LEU GLU LYS ALA TYR ARG ILE LYS LYS ASN ALA SEQRES 2 A 117 ASP PHE GLN ARG ILE TYR LYS LYS GLY HIS SER VAL ALA SEQRES 3 A 117 ASN ARG GLN PHE VAL VAL TYR THR CYS ASN ASN LYS GLU SEQRES 4 A 117 ILE ASP HIS PHE ARG LEU GLY ILE SER VAL SER LYS LYS SEQRES 5 A 117 LEU GLY ASN ALA VAL LEU ARG ASN LYS ILE LYS ARG ALA SEQRES 6 A 117 ILE ARG GLU ASN PHE LYS VAL HIS LYS SER HIS ILE LEU SEQRES 7 A 117 ALA LYS ASP ILE ILE VAL ILE ALA ARG GLN PRO ALA LYS SEQRES 8 A 117 ASP MET THR THR LEU GLN ILE GLN ASN SER LEU GLU HIS SEQRES 9 A 117 VAL LEU LYS ILE ALA LYS VAL PHE ASN LYS LYS ILE LYS HELIX 1 1 GLU A 4 TYR A 7 5 4 HELIX 2 2 ASN A 12 GLY A 22 1 11 HELIX 3 3 VAL A 57 HIS A 73 1 17 HELIX 4 4 LYS A 74 HIS A 76 5 3 HELIX 5 5 GLN A 88 MET A 93 5 6 HELIX 6 6 LEU A 96 GLU A 103 1 8 HELIX 7 7 HIS A 104 LYS A 110 1 7 SHEET 1 A 2 HIS A 23 SER A 24 0 SHEET 2 A 2 TYR A 33 THR A 34 -1 O THR A 34 N HIS A 23 SHEET 1 B 3 PHE A 30 VAL A 31 0 SHEET 2 B 3 ILE A 82 ALA A 86 -1 N ILE A 85 O VAL A 31 SHEET 3 B 3 LEU A 45 SER A 48 1 O GLY A 46 N VAL A 84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1