data_1D80 # _entry.id 1D80 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D80 pdb_00001d80 10.2210/pdb1d80/pdb RCSB BDL046 ? ? WWPDB D_1000172678 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-07-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D80 _pdbx_database_status.recvd_initial_deposition_date 1992-06-17 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Skelly, J.V.' 1 'Edwards, K.J.' 2 'Jenkins, T.C.' 3 'Neidle, S.' 4 # _citation.id primary _citation.title 'Crystal structure of an oligonucleotide duplex containing G.G base pairs: influence of mispairing on DNA backbone conformation.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 90 _citation.page_first 804 _citation.page_last 808 _citation.year 1993 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8430089 _citation.pdbx_database_id_DOI 10.1073/pnas.90.3.804 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Skelly, J.V.' 1 ? primary 'Edwards, K.J.' 2 ? primary 'Jenkins, T.C.' 3 ? primary 'Neidle, S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*GP*GP*CP*G)-3') ; 3703.416 2 ? ? ? ? 2 water nat water 18.015 72 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DG)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTGGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 13 13 DC C B . n B 1 2 DG 2 14 14 DG G B . n B 1 3 DC 3 15 15 DC C B . n B 1 4 DG 4 16 16 DG G B . n B 1 5 DA 5 17 17 DA A B . n B 1 6 DA 6 18 18 DA A B . n B 1 7 DT 7 19 19 DT T B . n B 1 8 DT 8 20 20 DT T B . n B 1 9 DG 9 21 21 DG G B . n B 1 10 DG 10 22 22 DG G B . n B 1 11 DC 11 23 23 DC C B . n B 1 12 DG 12 24 24 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 25 25 HOH HOH A . C 2 HOH 2 27 27 HOH HOH A . C 2 HOH 3 29 29 HOH HOH A . C 2 HOH 4 30 30 HOH HOH A . C 2 HOH 5 31 31 HOH HOH A . C 2 HOH 6 32 32 HOH HOH A . C 2 HOH 7 36 36 HOH HOH A . C 2 HOH 8 37 37 HOH HOH A . C 2 HOH 9 38 38 HOH HOH A . C 2 HOH 10 39 39 HOH HOH A . C 2 HOH 11 41 41 HOH HOH A . C 2 HOH 12 42 42 HOH HOH A . C 2 HOH 13 43 43 HOH HOH A . C 2 HOH 14 44 44 HOH HOH A . C 2 HOH 15 45 45 HOH HOH A . C 2 HOH 16 46 46 HOH HOH A . C 2 HOH 17 51 51 HOH HOH A . C 2 HOH 18 52 52 HOH HOH A . C 2 HOH 19 53 53 HOH HOH A . C 2 HOH 20 54 54 HOH HOH A . C 2 HOH 21 55 55 HOH HOH A . C 2 HOH 22 58 58 HOH HOH A . C 2 HOH 23 59 59 HOH HOH A . C 2 HOH 24 63 63 HOH HOH A . C 2 HOH 25 65 65 HOH HOH A . C 2 HOH 26 66 66 HOH HOH A . C 2 HOH 27 68 68 HOH HOH A . C 2 HOH 28 69 69 HOH HOH A . C 2 HOH 29 70 70 HOH HOH A . C 2 HOH 30 75 75 HOH HOH A . C 2 HOH 31 76 76 HOH HOH A . C 2 HOH 32 77 77 HOH HOH A . C 2 HOH 33 78 78 HOH HOH A . C 2 HOH 34 79 79 HOH HOH A . C 2 HOH 35 80 80 HOH HOH A . C 2 HOH 36 81 81 HOH HOH A . C 2 HOH 37 83 83 HOH HOH A . C 2 HOH 38 84 84 HOH HOH A . C 2 HOH 39 92 92 HOH HOH A . C 2 HOH 40 93 93 HOH HOH A . C 2 HOH 41 94 94 HOH HOH A . C 2 HOH 42 96 96 HOH HOH A . D 2 HOH 1 26 26 HOH HOH B . D 2 HOH 2 28 28 HOH HOH B . D 2 HOH 3 33 33 HOH HOH B . D 2 HOH 4 34 34 HOH HOH B . D 2 HOH 5 35 35 HOH HOH B . D 2 HOH 6 40 40 HOH HOH B . D 2 HOH 7 47 47 HOH HOH B . D 2 HOH 8 48 48 HOH HOH B . D 2 HOH 9 49 49 HOH HOH B . D 2 HOH 10 50 50 HOH HOH B . D 2 HOH 11 56 56 HOH HOH B . D 2 HOH 12 57 57 HOH HOH B . D 2 HOH 13 60 60 HOH HOH B . D 2 HOH 14 61 61 HOH HOH B . D 2 HOH 15 62 62 HOH HOH B . D 2 HOH 16 64 64 HOH HOH B . D 2 HOH 17 67 67 HOH HOH B . D 2 HOH 18 71 71 HOH HOH B . D 2 HOH 19 72 72 HOH HOH B . D 2 HOH 20 73 73 HOH HOH B . D 2 HOH 21 74 74 HOH HOH B . D 2 HOH 22 82 82 HOH HOH B . D 2 HOH 23 85 85 HOH HOH B . D 2 HOH 24 86 86 HOH HOH B . D 2 HOH 25 87 87 HOH HOH B . D 2 HOH 26 88 88 HOH HOH B . D 2 HOH 27 89 89 HOH HOH B . D 2 HOH 28 90 90 HOH HOH B . D 2 HOH 29 91 91 HOH HOH B . D 2 HOH 30 95 95 HOH HOH B . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D80 _cell.length_a 25.440 _cell.length_b 41.580 _cell.length_c 66.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D80 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.entry_id 1D80 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.88 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 279.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, temperature 279.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 SPERMINE ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 283.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type XENTRONICS _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR571' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D80 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.200 _reflns.number_obs 3811 _reflns.number_all 8732 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D80 _refine.ls_number_reflns_obs 2365 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 2.000 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1880000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 492 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 564 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it 4.100 5.000 ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it 5.700 7.500 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it 5.789 7.500 ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it 6.602 10.00 ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d 0.013 0.025 ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d 0.031 0.040 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d 0.058 0.050 ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d 0.068 0.075 ? ? 'X-RAY DIFFRACTION' ? n_plane_restr 0.019 0.030 ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr 0.072 0.100 ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd 0.187 0.250 ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd 0.235 0.250 ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D80 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D80 _struct.title 'CRYSTAL STRUCTURE OF AN OLIGONUCLEOTIDE DUPLEX CONTAINING G.G BASE-PAIRS: THE INFLUENCE OF MISPAIRING ON DNA BACKBONE CONFORMATION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D80 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, MISMATCHED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D80 _struct_ref.pdbx_db_accession 1D80 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D80 A 1 ? 12 ? 1D80 1 ? 12 ? 1 12 2 1 1D80 B 1 ? 12 ? 1D80 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DG 9 O6 ? ? A DG 4 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DG 9 N7 ? ? A DG 4 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N7 ? ? ? 1_555 B DG 4 N2 ? ? A DG 9 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DG 4 N1 ? ? A DG 9 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N9 A DG 2 ? ? O A HOH 59 ? ? 0.29 2 1 C8 A DG 2 ? ? O A HOH 59 ? ? 1.13 3 1 "O4'" A DC 11 ? ? O A HOH 93 ? ? 1.23 4 1 O2 A DC 1 ? ? O A HOH 37 ? ? 1.29 5 1 C4 A DG 2 ? ? O A HOH 59 ? ? 1.42 6 1 N3 B DC 23 ? ? O B HOH 60 ? ? 1.51 7 1 N1 A DG 2 ? ? O B HOH 60 ? ? 1.56 8 1 "O5'" B DC 15 ? ? O B HOH 67 ? ? 1.63 9 1 O6 A DG 2 ? ? O A HOH 69 ? ? 1.68 10 1 "C1'" A DG 2 ? ? O A HOH 59 ? ? 1.69 11 1 OP1 A DC 3 ? ? O A HOH 68 ? ? 1.72 12 1 "C4'" B DC 15 ? ? O B HOH 67 ? ? 1.75 13 1 "C5'" B DC 15 ? ? O B HOH 67 ? ? 1.75 14 1 N7 A DG 2 ? ? O A HOH 69 ? ? 1.86 15 1 "C1'" A DC 11 ? ? O A HOH 93 ? ? 1.86 16 1 "O4'" B DC 15 ? ? O B HOH 67 ? ? 1.89 17 1 C2 A DC 1 ? ? O A HOH 37 ? ? 1.91 18 1 OP1 A DG 9 ? ? O A HOH 52 ? ? 1.93 19 1 C6 A DG 2 ? ? O A HOH 69 ? ? 1.93 20 1 C5 A DG 2 ? ? O A HOH 69 ? ? 1.98 21 1 N7 A DG 2 ? ? O A HOH 59 ? ? 2.01 22 1 "C3'" B DC 15 ? ? O B HOH 67 ? ? 2.03 23 1 N1 A DC 11 ? ? O A HOH 93 ? ? 2.05 24 1 N2 B DG 24 ? ? O A HOH 37 ? ? 2.05 25 1 C5 A DG 2 ? ? O A HOH 59 ? ? 2.07 26 1 N2 A DG 2 ? ? O A HOH 43 ? ? 2.09 27 1 P A DC 3 ? ? O A HOH 68 ? ? 2.14 28 1 "C4'" A DC 11 ? ? O A HOH 93 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 "O3'" A DC 11 ? ? 1_555 O A HOH 83 ? ? 2_664 1.13 2 1 O A HOH 65 ? ? 1_555 O B HOH 61 ? ? 1_455 1.27 3 1 O2 B DC 23 ? ? 1_555 O A HOH 92 ? ? 2_665 1.42 4 1 N3 B DG 22 ? ? 1_555 O A HOH 36 ? ? 2_665 1.46 5 1 O A HOH 63 ? ? 1_555 O B HOH 64 ? ? 1_455 1.53 6 1 O2 A DC 3 ? ? 1_555 O A HOH 25 ? ? 2_665 1.57 7 1 N2 B DG 22 ? ? 1_555 O A HOH 25 ? ? 2_665 1.59 8 1 "O5'" B DC 13 ? ? 1_555 O A HOH 78 ? ? 4_455 1.64 9 1 "C5'" B DG 24 ? ? 1_555 O A HOH 81 ? ? 2_665 1.71 10 1 "C3'" A DC 11 ? ? 1_555 O A HOH 83 ? ? 2_664 1.78 11 1 "C1'" A DC 3 ? ? 1_555 O A HOH 41 ? ? 2_665 1.80 12 1 "O3'" A DG 12 ? ? 1_555 N2 B DG 22 ? ? 2_664 1.85 13 1 "O4'" A DG 12 ? ? 1_555 O A HOH 43 ? ? 2_664 1.92 14 1 C2 B DC 23 ? ? 1_555 O A HOH 92 ? ? 2_665 1.99 15 1 C4 B DG 22 ? ? 1_555 O A HOH 36 ? ? 2_665 2.01 16 1 "C4'" A DG 12 ? ? 1_555 O2 B DC 23 ? ? 2_664 2.06 17 1 OP2 A DG 10 ? ? 1_555 O B HOH 87 ? ? 4_465 2.08 18 1 O A HOH 31 ? ? 1_555 O A HOH 79 ? ? 3_645 2.11 19 1 O A HOH 52 ? ? 1_555 O A HOH 53 ? ? 4_465 2.12 20 1 O2 A DC 3 ? ? 1_555 O A HOH 41 ? ? 2_665 2.15 21 1 "O3'" B DC 23 ? ? 1_555 O A HOH 81 ? ? 2_665 2.16 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DC 3 ? ? "O5'" A DC 3 ? ? 1.532 1.593 -0.061 0.010 N 2 1 "O3'" A DT 7 ? ? P A DT 8 ? ? 1.515 1.607 -0.092 0.012 Y 3 1 P A DT 8 ? ? OP1 A DT 8 ? ? 1.593 1.485 0.108 0.017 N 4 1 P A DT 8 ? ? "O5'" A DT 8 ? ? 1.457 1.593 -0.136 0.010 N 5 1 C6 B DG 14 ? ? N1 B DG 14 ? ? 1.349 1.391 -0.042 0.007 N 6 1 N3 B DC 15 ? ? C4 B DC 15 ? ? 1.381 1.335 0.046 0.007 N 7 1 "O3'" B DC 15 ? ? P B DG 16 ? ? 1.790 1.607 0.183 0.012 Y 8 1 "O3'" B DA 17 ? ? P B DA 18 ? ? 1.697 1.607 0.090 0.012 Y 9 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? 1.496 1.420 0.076 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" A DC 1 ? ? "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? 104.59 109.40 -4.81 0.80 N 2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 95.41 102.40 -6.99 0.80 N 3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.09 108.30 2.79 0.30 N 4 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 100.96 109.40 -8.44 0.80 N 5 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.54 108.30 2.24 0.30 N 6 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 120.20 125.10 -4.90 0.60 N 7 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 115.12 111.50 3.62 0.50 N 8 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 115.11 119.90 -4.79 0.60 N 9 1 OP1 A DC 3 ? ? P A DC 3 ? ? OP2 A DC 3 ? ? 109.05 119.60 -10.55 1.50 N 10 1 P A DC 3 ? ? "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? 137.49 120.90 16.59 1.60 N 11 1 "C1'" A DC 3 ? ? "O4'" A DC 3 ? ? "C4'" A DC 3 ? ? 103.35 110.10 -6.75 1.00 N 12 1 "C3'" A DC 3 ? ? "O3'" A DC 3 ? ? P A DG 4 ? ? 111.68 119.70 -8.02 1.20 Y 13 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 102.07 109.40 -7.33 0.80 N 14 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? "C1'" A DG 4 ? ? 95.75 102.40 -6.65 0.80 N 15 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 118.51 108.30 10.21 0.30 N 16 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 119.62 125.10 -5.48 0.60 N 17 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 116.38 111.50 4.88 0.50 N 18 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 114.53 119.90 -5.37 0.70 N 19 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 123.12 128.60 -5.48 0.60 N 20 1 "O5'" A DA 5 ? ? P A DA 5 ? ? OP2 A DA 5 ? ? 119.38 110.70 8.68 1.20 N 21 1 "C4'" A DA 5 ? ? "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? 97.24 102.20 -4.96 0.70 N 22 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 115.29 108.30 6.99 0.30 N 23 1 "C3'" A DA 5 ? ? "O3'" A DA 5 ? ? P A DA 6 ? ? 155.65 119.70 35.95 1.20 Y 24 1 "O3'" A DA 5 ? ? P A DA 6 ? ? OP1 A DA 6 ? ? 117.71 110.50 7.21 1.10 Y 25 1 C6 A DA 6 ? ? N1 A DA 6 ? ? C2 A DA 6 ? ? 122.92 118.60 4.32 0.60 N 26 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 126.25 129.30 -3.05 0.50 N 27 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 113.41 117.70 -4.29 0.50 N 28 1 "O3'" A DA 6 ? ? P A DT 7 ? ? OP1 A DT 7 ? ? 118.17 110.50 7.67 1.10 Y 29 1 "O5'" A DT 7 ? ? "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 102.46 109.40 -6.94 0.80 N 30 1 N1 A DT 7 ? ? C2 A DT 7 ? ? N3 A DT 7 ? ? 119.81 114.60 5.21 0.60 N 31 1 C2 A DT 7 ? ? N3 A DT 7 ? ? C4 A DT 7 ? ? 120.39 127.20 -6.81 0.60 N 32 1 N3 A DT 7 ? ? C4 A DT 7 ? ? C5 A DT 7 ? ? 119.41 115.20 4.21 0.60 N 33 1 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 129.10 119.70 9.40 1.20 Y 34 1 "O3'" A DT 7 ? ? P A DT 8 ? ? "O5'" A DT 8 ? ? 121.26 104.00 17.26 1.90 Y 35 1 "O3'" A DT 7 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 91.51 105.20 -13.69 2.20 Y 36 1 OP1 A DT 8 ? ? P A DT 8 ? ? OP2 A DT 8 ? ? 106.03 119.60 -13.57 1.50 N 37 1 P A DT 8 ? ? "O5'" A DT 8 ? ? "C5'" A DT 8 ? ? 139.93 120.90 19.03 1.60 N 38 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? "C2'" A DT 8 ? ? 101.03 105.90 -4.87 0.80 N 39 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.69 108.30 4.39 0.30 N 40 1 N1 A DT 8 ? ? C2 A DT 8 ? ? N3 A DT 8 ? ? 119.40 114.60 4.80 0.60 N 41 1 C2 A DT 8 ? ? N3 A DT 8 ? ? C4 A DT 8 ? ? 119.35 127.20 -7.85 0.60 N 42 1 N3 A DT 8 ? ? C4 A DT 8 ? ? C5 A DT 8 ? ? 120.56 115.20 5.36 0.60 N 43 1 N3 A DT 8 ? ? C4 A DT 8 ? ? O4 A DT 8 ? ? 112.34 119.90 -7.56 0.60 N 44 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.67 122.90 -4.23 0.60 N 45 1 "C3'" A DT 8 ? ? "O3'" A DT 8 ? ? P A DG 9 ? ? 135.32 119.70 15.62 1.20 Y 46 1 "O5'" A DG 9 ? ? P A DG 9 ? ? OP2 A DG 9 ? ? 120.32 110.70 9.62 1.20 N 47 1 "O5'" A DG 9 ? ? "C5'" A DG 9 ? ? "C4'" A DG 9 ? ? 102.67 109.40 -6.73 0.80 N 48 1 P A DG 9 ? ? "O5'" A DG 9 ? ? "C5'" A DG 9 ? ? 109.17 120.90 -11.73 1.60 N 49 1 "C3'" A DG 9 ? ? "C2'" A DG 9 ? ? "C1'" A DG 9 ? ? 95.74 102.40 -6.66 0.80 N 50 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 116.03 108.30 7.73 0.30 N 51 1 C5 A DG 9 ? ? C6 A DG 9 ? ? N1 A DG 9 ? ? 114.86 111.50 3.36 0.50 N 52 1 "C3'" A DG 9 ? ? "O3'" A DG 9 ? ? P A DG 10 ? ? 132.20 119.70 12.50 1.20 Y 53 1 "O5'" A DG 10 ? ? "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? 103.16 109.40 -6.24 0.80 N 54 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.81 108.30 2.51 0.30 N 55 1 C5 A DG 10 ? ? C6 A DG 10 ? ? O6 A DG 10 ? ? 124.87 128.60 -3.73 0.60 N 56 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 151.21 119.70 31.51 1.20 Y 57 1 "C3'" A DC 11 ? ? "C2'" A DC 11 ? ? "C1'" A DC 11 ? ? 97.49 102.40 -4.91 0.80 N 58 1 "C3'" A DC 11 ? ? "O3'" A DC 11 ? ? P A DG 12 ? ? 135.70 119.70 16.00 1.20 Y 59 1 "O3'" A DC 11 ? ? P A DG 12 ? ? OP1 A DG 12 ? ? 125.27 110.50 14.77 1.10 Y 60 1 OP1 A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 103.80 119.60 -15.80 1.50 N 61 1 "O5'" A DG 12 ? ? P A DG 12 ? ? OP2 A DG 12 ? ? 119.56 110.70 8.86 1.20 N 62 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 112.13 108.30 3.83 0.30 N 63 1 C5 A DG 12 ? ? C6 A DG 12 ? ? N1 A DG 12 ? ? 114.74 111.50 3.24 0.50 N 64 1 "O3'" B DC 13 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 118.69 110.50 8.19 1.10 Y 65 1 OP1 B DG 14 ? ? P B DG 14 ? ? OP2 B DG 14 ? ? 108.76 119.60 -10.84 1.50 N 66 1 "O5'" B DG 14 ? ? P B DG 14 ? ? OP1 B DG 14 ? ? 119.54 110.70 8.84 1.20 N 67 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 112.08 108.30 3.78 0.30 N 68 1 OP1 B DC 15 ? ? P B DC 15 ? ? OP2 B DC 15 ? ? 108.66 119.60 -10.94 1.50 N 69 1 "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 103.17 109.40 -6.23 0.80 N 70 1 P B DC 15 ? ? "O5'" B DC 15 ? ? "C5'" B DC 15 ? ? 109.70 120.90 -11.20 1.60 N 71 1 "C3'" B DC 15 ? ? "O3'" B DC 15 ? ? P B DG 16 ? ? 92.89 119.70 -26.81 1.20 Y 72 1 "O3'" B DC 15 ? ? P B DG 16 ? ? "O5'" B DG 16 ? ? 89.87 104.00 -14.13 1.90 Y 73 1 "O5'" B DG 16 ? ? P B DG 16 ? ? OP2 B DG 16 ? ? 122.31 110.70 11.61 1.20 N 74 1 "O5'" B DG 16 ? ? "C5'" B DG 16 ? ? "C4'" B DG 16 ? ? 103.38 109.40 -6.02 0.80 N 75 1 "C4'" B DG 16 ? ? "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? 97.42 102.20 -4.78 0.70 N 76 1 "C3'" B DG 16 ? ? "C2'" B DG 16 ? ? "C1'" B DG 16 ? ? 95.00 102.40 -7.40 0.80 N 77 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 113.44 108.30 5.14 0.30 N 78 1 C5 B DG 16 ? ? C6 B DG 16 ? ? O6 B DG 16 ? ? 124.46 128.60 -4.14 0.60 N 79 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 151.85 119.70 32.15 1.20 Y 80 1 "O5'" B DA 17 ? ? P B DA 17 ? ? OP1 B DA 17 ? ? 99.66 105.70 -6.04 0.90 N 81 1 "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? "C4'" B DA 17 ? ? 102.12 109.40 -7.28 0.80 N 82 1 P B DA 17 ? ? "O5'" B DA 17 ? ? "C5'" B DA 17 ? ? 109.81 120.90 -11.09 1.60 N 83 1 "C3'" B DA 17 ? ? "C2'" B DA 17 ? ? "C1'" B DA 17 ? ? 96.20 102.40 -6.20 0.80 N 84 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 114.98 108.30 6.68 0.30 N 85 1 N1 B DA 17 ? ? C2 B DA 17 ? ? N3 B DA 17 ? ? 125.31 129.30 -3.99 0.50 N 86 1 "O3'" B DA 17 ? ? P B DA 18 ? ? "O5'" B DA 18 ? ? 90.70 104.00 -13.30 1.90 Y 87 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 110.21 108.30 1.91 0.30 N 88 1 "C3'" B DA 18 ? ? "O3'" B DA 18 ? ? P B DT 19 ? ? 134.98 119.70 15.28 1.20 Y 89 1 P B DT 19 ? ? "O5'" B DT 19 ? ? "C5'" B DT 19 ? ? 106.51 120.90 -14.39 1.60 N 90 1 "C4'" B DT 19 ? ? "C3'" B DT 19 ? ? "C2'" B DT 19 ? ? 96.08 102.20 -6.12 0.70 N 91 1 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 111.79 108.30 3.49 0.30 N 92 1 N1 B DT 19 ? ? C2 B DT 19 ? ? N3 B DT 19 ? ? 118.99 114.60 4.39 0.60 N 93 1 C2 B DT 19 ? ? N3 B DT 19 ? ? C4 B DT 19 ? ? 121.59 127.20 -5.61 0.60 N 94 1 C6 B DT 19 ? ? C5 B DT 19 ? ? C7 B DT 19 ? ? 117.52 122.90 -5.38 0.60 N 95 1 "O3'" B DT 19 ? ? P B DT 20 ? ? OP2 B DT 20 ? ? 91.85 105.20 -13.35 2.20 Y 96 1 "O3'" B DT 19 ? ? P B DT 20 ? ? OP1 B DT 20 ? ? 123.72 110.50 13.22 1.10 Y 97 1 "O5'" B DT 20 ? ? "C5'" B DT 20 ? ? "C4'" B DT 20 ? ? 104.25 109.40 -5.15 0.80 N 98 1 "O4'" B DT 20 ? ? "C1'" B DT 20 ? ? N1 B DT 20 ? ? 118.32 108.30 10.02 0.30 N 99 1 N1 B DT 20 ? ? C2 B DT 20 ? ? N3 B DT 20 ? ? 120.14 114.60 5.54 0.60 N 100 1 C2 B DT 20 ? ? N3 B DT 20 ? ? C4 B DT 20 ? ? 119.17 127.20 -8.03 0.60 N 101 1 N3 B DT 20 ? ? C4 B DT 20 ? ? C5 B DT 20 ? ? 119.99 115.20 4.79 0.60 N 102 1 "C3'" B DT 20 ? ? "O3'" B DT 20 ? ? P B DG 21 ? ? 142.37 119.70 22.67 1.20 Y 103 1 OP1 B DG 21 ? ? P B DG 21 ? ? OP2 B DG 21 ? ? 107.58 119.60 -12.02 1.50 N 104 1 "C1'" B DG 21 ? ? "O4'" B DG 21 ? ? "C4'" B DG 21 ? ? 98.47 110.10 -11.63 1.00 N 105 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? "C2'" B DG 21 ? ? 98.14 105.90 -7.76 0.80 N 106 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 110.99 108.30 2.69 0.30 N 107 1 C6 B DG 21 ? ? N1 B DG 21 ? ? C2 B DG 21 ? ? 121.04 125.10 -4.06 0.60 N 108 1 C5 B DG 21 ? ? C6 B DG 21 ? ? N1 B DG 21 ? ? 115.51 111.50 4.01 0.50 N 109 1 "C3'" B DG 21 ? ? "O3'" B DG 21 ? ? P B DG 22 ? ? 127.61 119.70 7.91 1.20 Y 110 1 "O3'" B DG 21 ? ? P B DG 22 ? ? OP1 B DG 22 ? ? 117.69 110.50 7.19 1.10 Y 111 1 OP1 B DG 22 ? ? P B DG 22 ? ? OP2 B DG 22 ? ? 110.31 119.60 -9.29 1.50 N 112 1 "C3'" B DG 22 ? ? "C2'" B DG 22 ? ? "C1'" B DG 22 ? ? 96.05 102.40 -6.35 0.80 N 113 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? "C2'" B DG 22 ? ? 100.92 105.90 -4.98 0.80 N 114 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 117.37 108.30 9.07 0.30 N 115 1 C5 B DG 22 ? ? C6 B DG 22 ? ? N1 B DG 22 ? ? 114.82 111.50 3.32 0.50 N 116 1 C5 B DG 22 ? ? C6 B DG 22 ? ? O6 B DG 22 ? ? 124.90 128.60 -3.70 0.60 N 117 1 "C3'" B DG 22 ? ? "O3'" B DG 22 ? ? P B DC 23 ? ? 131.76 119.70 12.06 1.20 Y 118 1 "O5'" B DC 23 ? ? "C5'" B DC 23 ? ? "C4'" B DC 23 ? ? 104.42 109.40 -4.98 0.80 N 119 1 "C3'" B DC 23 ? ? "C2'" B DC 23 ? ? "C1'" B DC 23 ? ? 97.40 102.40 -5.00 0.80 N 120 1 "O4'" B DC 23 ? ? "C1'" B DC 23 ? ? N1 B DC 23 ? ? 117.30 108.30 9.00 0.30 N 121 1 C2 B DC 23 ? ? N3 B DC 23 ? ? C4 B DC 23 ? ? 123.01 119.90 3.11 0.50 N 122 1 N1 B DC 23 ? ? C2 B DC 23 ? ? O2 B DC 23 ? ? 122.64 118.90 3.74 0.60 N 123 1 OP1 B DG 24 ? ? P B DG 24 ? ? OP2 B DG 24 ? ? 107.70 119.60 -11.90 1.50 N 124 1 "O5'" B DG 24 ? ? P B DG 24 ? ? OP1 B DG 24 ? ? 132.89 110.70 22.19 1.20 N 125 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? "C2'" B DG 24 ? ? 100.40 105.90 -5.50 0.80 N 126 1 "O4'" B DG 24 ? ? "C1'" B DG 24 ? ? N9 B DG 24 ? ? 121.21 108.30 12.91 0.30 N 127 1 C5 B DG 24 ? ? C6 B DG 24 ? ? O6 B DG 24 ? ? 123.38 128.60 -5.22 0.60 N # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 "O3'" _pdbx_validate_polymer_linkage.auth_asym_id_1 B _pdbx_validate_polymer_linkage.auth_comp_id_1 DC _pdbx_validate_polymer_linkage.auth_seq_id_1 15 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 P _pdbx_validate_polymer_linkage.auth_asym_id_2 B _pdbx_validate_polymer_linkage.auth_comp_id_2 DG _pdbx_validate_polymer_linkage.auth_seq_id_2 16 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.79 # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D80 'double helix' 1D80 'b-form double helix' 1D80 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.139 -0.247 0.253 2.934 -9.431 -6.359 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.072 -0.071 0.021 -2.708 -11.547 0.348 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 -0.319 -0.162 0.054 -0.104 -7.275 -5.892 3 A_DC3:DG22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DG 9 1_555 0.717 3.634 0.375 -6.489 -21.442 -87.164 4 A_DG4:DG21_B A 4 ? B 21 ? 6 3 1 A DA 5 1_555 B DT 8 1_555 0.186 0.028 -0.265 9.080 -21.339 -4.218 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 -0.095 -0.076 0.156 2.936 -19.904 -1.565 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.148 -0.011 0.063 -4.029 -19.291 -4.551 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 0.211 -0.092 -0.067 0.738 -23.341 -6.424 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DG 9 1_555 B DG 4 1_555 -0.868 -3.538 0.144 6.783 13.699 91.631 9 A_DG9:DG16_B A 9 ? B 16 ? 6 3 1 A DG 10 1_555 B DC 3 1_555 0.343 -0.102 -0.149 5.950 -2.842 -4.800 10 A_DG10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.587 -0.282 -0.043 13.389 -16.554 -3.411 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 0.078 -0.119 -0.064 -5.622 -5.995 -4.970 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 -0.215 0.092 3.530 3.301 4.042 39.569 -0.367 0.726 3.494 5.940 -4.851 39.898 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.419 0.488 3.178 0.342 0.778 36.151 0.680 -0.629 3.191 1.253 -0.550 36.161 2 AA_DG2DC3:DG22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DG 9 1_555 1.502 -0.924 3.339 2.979 2.739 75.213 -0.841 -1.137 3.357 2.243 -2.439 75.306 3 AA_DC3DG4:DG21DG22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DG 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.677 1.933 3.232 3.395 2.406 -8.414 -16.660 2.703 2.648 -15.232 21.495 -9.386 4 AA_DG4DA5:DT20DG21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.086 -0.318 3.204 -3.642 2.038 35.636 -0.802 -0.370 3.174 3.316 5.926 35.872 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.231 -0.665 3.547 0.935 2.448 33.424 -1.588 -0.234 3.496 4.249 -1.622 33.524 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.452 -0.446 3.164 -1.531 -2.914 37.744 -0.322 0.504 3.204 -4.494 2.361 37.882 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DG 9 1_555 B DG 4 1_555 0.678 -3.593 1.754 -174.744 13.525 38.372 -1.837 -0.847 -0.323 6.885 88.956 175.529 8 AA_DT8DG9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DG 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 -3.030 -1.540 -0.136 135.502 -111.796 -9.426 1.124 -1.088 1.341 57.163 69.285 -175.682 9 AA_DG9DG10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.637 0.633 3.171 -2.686 -4.601 39.020 1.466 0.639 3.115 -6.849 3.999 39.368 10 AA_DG10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.212 0.152 3.952 -0.091 2.643 38.177 -0.170 0.309 3.953 4.036 0.139 38.265 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # _atom_sites.entry_id 1D80 _atom_sites.fract_transf_matrix[1][1] 0.039308 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024050 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015129 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_