data_1D83 # _entry.id 1D83 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D83 pdb_00001d83 10.2210/pdb1d83/pdb WWPDB D_1000172681 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D83 _pdbx_database_status.recvd_initial_deposition_date 1992-07-22 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, X.' 1 'Mirau, P.' 2 'Patel, D.J.' 3 # _citation.id primary _citation.title 'Structure refinement of the chromomycin dimer-DNA oligomer complex in solution.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 223 _citation.page_first 259 _citation.page_last 279 _citation.year 1992 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 1731073 _citation.pdbx_database_id_DOI '10.1016/0022-2836(92)90730-8' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, X.L.' 1 ? primary 'Mirau, P.' 2 ? primary 'Patel, D.J.' 3 ? # _cell.entry_id 1D83 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D83 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*AP*GP*GP*CP*CP*TP*T)-3') ; 2426.617 2 ? ? ? ? 2 branched man ;3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol-(1-3)-(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol ; 432.506 2 ? ? ? ? 3 branched man '2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose-(1-3)-(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' 318.363 2 ? ? ? ? 4 non-polymer syn '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' 420.410 2 ? ? ? ? 5 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? # _entity_keywords.entity_id 1 _entity_keywords.text 'DEOXYRIBONUCLEIC ACID' # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DA)(DG)(DG)(DC)(DC)(DT)(DT)' _entity_poly.pdbx_seq_one_letter_code_can AAGGCCTT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DC n 1 7 DT n 1 8 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'CHEMICALY SYNTHESIZED' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D83 _struct_ref.pdbx_db_accession 1D83 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1D83 A 1 ? 8 ? 1D83 1 ? 8 ? 1 8 2 1 1D83 B 1 ? 8 ? 1D83 11 ? 18 ? 11 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1GL 'D-saccharide, alpha linking' . 2,6-dideoxy-4-O-methyl-alpha-D-galactopyranose ;4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE; 2-deoxy-4-O-methyl-alpha-D-fucopyranose; 2,6-dideoxy-4-O-methyl-alpha-D-galactose; 2,6-dideoxy-4-O-methyl-D-galactose; 2,6-dideoxy-4-O-methyl-galactose ; 'C7 H14 O4' 162.184 ARI 'D-saccharide, beta linking' . '(2R,3R,6R)-6-hydroxy-2-methyltetrahydro-2H-pyran-3-yl acetate' '[O4]-ACETOXY-2,3-DIDEOXYFUCOSE' 'C8 H14 O4' 174.194 CDR 'D-saccharide, beta linking' . '(2R,5S,6R)-6-methyltetrahydro-2H-pyran-2,5-diol' 2,3-DIDEOXYFUCOSE 'C6 H12 O3' 132.158 CPH non-polymer . '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' None 'C21 H24 O9' 420.410 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 ERI 'L-saccharide, alpha linking' n 3-C-methyl-4-O-acetyl-alpha-L-Olivopyranose ;4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE; 3-C-methyl-4-O-acetyl-alpha-L-Olivose; 3-C-methyl-4-O-acetyl-L-Olivose; 3-C-methyl-4-O-acetyl-Olivose ; 'C9 H16 O5' 204.220 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _pdbx_nmr_details.entry_id 1D83 _pdbx_nmr_details.text ;CHROMOMYCIN BINDS AS A MG2 CATION-COORDINATED DIMER. EACH CHROMOMYCIN IS REPRESENTED AS A SET OF SIX HET GROUPS: 1GL - ARI - CPH - CDR - CDR - ERI. THE COORDINATING MG IS PRESENTED AS A SEPARATE HET GROUP. ; # _pdbx_nmr_ensemble.entry_id 1D83 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_software.name X-PLOR _pdbx_nmr_software.version ? _pdbx_nmr_software.classification refinement _pdbx_nmr_software.authors BRUNGER _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1D83 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1D83 _struct.title 'STRUCTURE REFINEMENT OF THE CHROMOMYCIN DIMER/DNA OLIGOMER COMPLEX IN SOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D83 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, DOUBLE HELIX, CHROMOMYCIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 4 ? H N N 5 ? I N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? G CPH . C6 ? ? ? 1_555 D ARI . O1 ? ? A CPH 33 D ARI 1 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale2 covale one ? G CPH . C2 ? ? ? 1_555 F CDR . O1 ? ? A CPH 33 F CDR 1 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale3 covale one ? I CPH . C2 ? ? ? 1_555 C CDR . O1 ? ? B CPH 23 C CDR 1 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale4 covale one ? I CPH . C6 ? ? ? 1_555 E ARI . O1 ? ? B CPH 23 E ARI 1 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale5 covale one ? C CDR . C3 ? ? ? 1_555 C CDR . O1 ? ? C CDR 1 C CDR 2 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale6 covale one ? C CDR . C3 ? ? ? 1_555 C ERI . O1 ? ? C CDR 2 C ERI 3 1_555 ? ? ? ? ? ? ? 1.437 ? ? covale7 covale one ? D ARI . C3 ? ? ? 1_555 D 1GL . O1 ? ? D ARI 1 D 1GL 2 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale8 covale one ? E ARI . C3 ? ? ? 1_555 E 1GL . O1 ? ? E ARI 1 E 1GL 2 1_555 ? ? ? ? ? ? ? 1.445 ? ? covale9 covale one ? F CDR . C3 ? ? ? 1_555 F CDR . O1 ? ? F CDR 1 F CDR 2 1_555 ? ? ? ? ? ? ? 1.447 ? ? covale10 covale one ? F CDR . C3 ? ? ? 1_555 F ERI . O1 ? ? F CDR 2 F ERI 3 1_555 ? ? ? ? ? ? ? 1.438 ? ? metalc1 metalc ? ? G CPH . O1 ? ? ? 1_555 H MG . MG ? ? A CPH 33 B MG 1 1_555 ? ? ? ? ? ? ? 1.890 ? ? metalc2 metalc ? ? G CPH . O9 ? ? ? 1_555 H MG . MG ? ? A CPH 33 B MG 1 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc3 metalc ? ? H MG . MG ? ? ? 1_555 I CPH . O1 ? ? B MG 1 B CPH 23 1_555 ? ? ? ? ? ? ? 1.888 ? ? metalc4 metalc ? ? H MG . MG ? ? ? 1_555 I CPH . O9 ? ? B MG 1 B CPH 23 1_555 ? ? ? ? ? ? ? 1.953 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 1 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 1 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 2 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 2 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 3 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 4 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 5 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 5 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 5 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 6 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 7 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 7 B DA 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 8 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 8 B DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1D83 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1D83 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA A A . n A 1 2 DA 2 2 2 DA A A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n B 1 1 DA 1 11 11 DA A B . n B 1 2 DA 2 12 12 DA A B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DG 4 14 14 DG G B . n B 1 5 DC 5 15 15 DC C B . n B 1 6 DC 6 16 16 DC C B . n B 1 7 DT 7 17 17 DT T B . n B 1 8 DT 8 18 18 DT T B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CPH 1 33 33 CPH CPH A . H 5 MG 1 1 1 MG MG B . I 4 CPH 1 23 23 CPH CPH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O1 ? G CPH . ? A CPH 33 ? 1_555 MG ? H MG . ? B MG 1 ? 1_555 O9 ? G CPH . ? A CPH 33 ? 1_555 76.7 ? 2 O1 ? G CPH . ? A CPH 33 ? 1_555 MG ? H MG . ? B MG 1 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 108.8 ? 3 O9 ? G CPH . ? A CPH 33 ? 1_555 MG ? H MG . ? B MG 1 ? 1_555 O1 ? I CPH . ? B CPH 23 ? 1_555 105.3 ? 4 O1 ? G CPH . ? A CPH 33 ? 1_555 MG ? H MG . ? B MG 1 ? 1_555 O9 ? I CPH . ? B CPH 23 ? 1_555 109.5 ? 5 O9 ? G CPH . ? A CPH 33 ? 1_555 MG ? H MG . ? B MG 1 ? 1_555 O9 ? I CPH . ? B CPH 23 ? 1_555 170.1 ? 6 O1 ? I CPH . ? B CPH 23 ? 1_555 MG ? H MG . ? B MG 1 ? 1_555 O9 ? I CPH . ? B CPH 23 ? 1_555 80.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-07-15 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 3 0 2023-08-02 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' Other 8 4 'Structure model' 'Structure summary' 9 5 'Structure model' 'Atomic model' 10 5 'Structure model' 'Database references' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_branch_scheme 5 4 'Structure model' pdbx_chem_comp_identifier 6 4 'Structure model' pdbx_database_status 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly 14 4 'Structure model' pdbx_struct_conn_angle 15 4 'Structure model' pdbx_struct_oper_list 16 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 17 4 'Structure model' struct_asym 18 4 'Structure model' struct_conn 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen 21 5 'Structure model' atom_site 22 5 'Structure model' chem_comp 23 5 'Structure model' database_2 24 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.mon_nstd_flag' 15 4 'Structure model' '_chem_comp.name' 16 4 'Structure model' '_chem_comp.type' 17 4 'Structure model' '_pdbx_database_status.process_site' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.value' 28 4 'Structure model' '_struct_conn.conn_type_id' 29 4 'Structure model' '_struct_conn.id' 30 4 'Structure model' '_struct_conn.pdbx_dist_value' 31 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 32 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 40 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 44 5 'Structure model' '_atom_site.B_iso_or_equiv' 45 5 'Structure model' '_atom_site.Cartn_x' 46 5 'Structure model' '_atom_site.Cartn_y' 47 5 'Structure model' '_atom_site.Cartn_z' 48 5 'Structure model' '_atom_site.auth_atom_id' 49 5 'Structure model' '_atom_site.label_atom_id' 50 5 'Structure model' '_chem_comp.pdbx_synonyms' 51 5 'Structure model' '_database_2.pdbx_DOI' 52 5 'Structure model' '_database_2.pdbx_database_accession' 53 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 X-PLOR refinement . ? 2 X-PLOR phasing . ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H22 B DG 14 ? ? HO8 B CPH 23 ? ? 1.19 2 1 H22 A DG 4 ? ? HO8 A CPH 33 ? ? 1.20 3 1 H22 A DG 4 ? ? O8 A CPH 33 ? ? 1.56 4 1 H22 B DG 14 ? ? O8 B CPH 23 ? ? 1.56 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DA 1 ? ? "C4'" A DA 1 ? ? 1.558 1.512 0.046 0.007 N 2 1 "C2'" A DA 1 ? ? "C1'" A DA 1 ? ? 1.604 1.519 0.085 0.010 N 3 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? 1.486 1.420 0.066 0.011 N 4 1 "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? 1.503 1.449 0.054 0.009 N 5 1 C6 A DA 1 ? ? N1 A DA 1 ? ? 1.303 1.351 -0.048 0.007 N 6 1 C8 A DA 1 ? ? N9 A DA 1 ? ? 1.294 1.373 -0.079 0.008 N 7 1 N9 A DA 1 ? ? C4 A DA 1 ? ? 1.419 1.374 0.045 0.006 N 8 1 "C5'" A DA 2 ? ? "C4'" A DA 2 ? ? 1.555 1.512 0.043 0.007 N 9 1 C5 A DA 2 ? ? N7 A DA 2 ? ? 1.427 1.388 0.039 0.006 N 10 1 N9 A DA 2 ? ? C4 A DA 2 ? ? 1.422 1.374 0.048 0.006 N 11 1 "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 1.603 1.529 0.074 0.010 N 12 1 "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 1.691 1.519 0.172 0.010 N 13 1 "O3'" A DG 3 ? ? P A DG 4 ? ? 1.688 1.607 0.081 0.012 Y 14 1 P A DG 4 ? ? "O5'" A DG 4 ? ? 1.680 1.593 0.087 0.010 N 15 1 "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.589 1.529 0.060 0.010 N 16 1 N3 A DG 4 ? ? C4 A DG 4 ? ? 1.484 1.350 0.134 0.007 N 17 1 C5 A DG 4 ? ? N7 A DG 4 ? ? 1.428 1.388 0.040 0.006 N 18 1 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.423 1.374 0.049 0.007 N 19 1 N9 A DG 4 ? ? C4 A DG 4 ? ? 1.463 1.375 0.088 0.008 N 20 1 "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 1.570 1.512 0.058 0.007 N 21 1 "C5'" A DC 6 ? ? "C4'" A DC 6 ? ? 1.575 1.512 0.063 0.007 N 22 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? 1.493 1.420 0.073 0.011 N 23 1 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? 1.507 1.449 0.058 0.009 N 24 1 "C5'" A DT 7 ? ? "C4'" A DT 7 ? ? 1.637 1.512 0.125 0.007 N 25 1 "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? 1.600 1.518 0.082 0.012 N 26 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? 1.487 1.420 0.067 0.011 N 27 1 C4 A DT 7 ? ? C5 A DT 7 ? ? 1.501 1.445 0.056 0.009 N 28 1 C5 A DT 7 ? ? C7 A DT 7 ? ? 1.643 1.496 0.147 0.006 N 29 1 "C5'" B DA 11 ? ? "C4'" B DA 11 ? ? 1.557 1.512 0.045 0.007 N 30 1 "C2'" B DA 11 ? ? "C1'" B DA 11 ? ? 1.603 1.519 0.084 0.010 N 31 1 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? 1.486 1.420 0.066 0.011 N 32 1 "O4'" B DA 11 ? ? "C4'" B DA 11 ? ? 1.503 1.449 0.054 0.009 N 33 1 C6 B DA 11 ? ? N1 B DA 11 ? ? 1.302 1.351 -0.049 0.007 N 34 1 C8 B DA 11 ? ? N9 B DA 11 ? ? 1.295 1.373 -0.078 0.008 N 35 1 N9 B DA 11 ? ? C4 B DA 11 ? ? 1.417 1.374 0.043 0.006 N 36 1 "C5'" B DA 12 ? ? "C4'" B DA 12 ? ? 1.559 1.512 0.047 0.007 N 37 1 C5 B DA 12 ? ? C6 B DA 12 ? ? 1.460 1.406 0.054 0.009 N 38 1 C5 B DA 12 ? ? N7 B DA 12 ? ? 1.426 1.388 0.038 0.006 N 39 1 N9 B DA 12 ? ? C4 B DA 12 ? ? 1.420 1.374 0.046 0.006 N 40 1 "C4'" B DG 13 ? ? "C3'" B DG 13 ? ? 1.604 1.529 0.075 0.010 N 41 1 "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 1.684 1.519 0.165 0.010 N 42 1 "O3'" B DG 13 ? ? P B DG 14 ? ? 1.688 1.607 0.081 0.012 Y 43 1 P B DG 14 ? ? "O5'" B DG 14 ? ? 1.681 1.593 0.088 0.010 N 44 1 "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 1.611 1.529 0.082 0.010 N 45 1 N3 B DG 14 ? ? C4 B DG 14 ? ? 1.487 1.350 0.137 0.007 N 46 1 C5 B DG 14 ? ? N7 B DG 14 ? ? 1.428 1.388 0.040 0.006 N 47 1 N9 B DG 14 ? ? C4 B DG 14 ? ? 1.463 1.375 0.088 0.008 N 48 1 "C5'" B DC 15 ? ? "C4'" B DC 15 ? ? 1.567 1.512 0.055 0.007 N 49 1 "C5'" B DC 16 ? ? "C4'" B DC 16 ? ? 1.577 1.512 0.065 0.007 N 50 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? 1.490 1.420 0.070 0.011 N 51 1 "O4'" B DC 16 ? ? "C4'" B DC 16 ? ? 1.505 1.449 0.056 0.009 N 52 1 "C5'" B DT 17 ? ? "C4'" B DT 17 ? ? 1.632 1.512 0.120 0.007 N 53 1 "C3'" B DT 17 ? ? "C2'" B DT 17 ? ? 1.594 1.518 0.076 0.012 N 54 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? 1.486 1.420 0.066 0.011 N 55 1 C5 B DT 17 ? ? C7 B DT 17 ? ? 1.647 1.496 0.151 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DA 1 ? ? "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? 115.48 110.30 5.18 0.70 N 2 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? "C2'" A DA 1 ? ? 97.22 105.90 -8.68 0.80 N 3 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 123.09 108.30 14.79 0.30 N 4 1 N1 A DA 1 ? ? C2 A DA 1 ? ? N3 A DA 1 ? ? 133.75 129.30 4.45 0.50 N 5 1 C5 A DA 1 ? ? N7 A DA 1 ? ? C8 A DA 1 ? ? 98.53 103.90 -5.37 0.50 N 6 1 N7 A DA 1 ? ? C8 A DA 1 ? ? N9 A DA 1 ? ? 125.48 113.80 11.68 0.50 N 7 1 C8 A DA 1 ? ? N9 A DA 1 ? ? C4 A DA 1 ? ? 98.47 105.80 -7.33 0.40 N 8 1 C4 A DA 1 ? ? N9 A DA 1 ? ? "C1'" A DA 1 ? ? 138.06 126.30 11.76 1.80 N 9 1 "C5'" A DA 2 ? ? "C4'" A DA 2 ? ? "O4'" A DA 2 ? ? 117.25 109.80 7.45 1.10 N 10 1 "C4'" A DA 2 ? ? "C3'" A DA 2 ? ? "O3'" A DA 2 ? ? 85.79 109.70 -23.91 2.50 N 11 1 N9 A DA 2 ? ? "C1'" A DA 2 ? ? "C2'" A DA 2 ? ? 123.03 114.30 8.73 1.40 N 12 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 121.79 108.30 13.49 0.30 N 13 1 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 112.61 118.60 -5.99 0.60 N 14 1 C5 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 129.12 123.70 5.42 0.80 N 15 1 "C3'" A DA 2 ? ? "O3'" A DA 2 ? ? P A DG 3 ? ? 133.45 119.70 13.75 1.20 Y 16 1 "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 111.75 102.50 9.25 1.20 N 17 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? "C2'" A DG 3 ? ? 95.70 105.90 -10.20 0.80 N 18 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 120.19 108.30 11.89 0.30 N 19 1 C5 A DG 3 ? ? N7 A DG 3 ? ? C8 A DG 3 ? ? 101.21 104.30 -3.09 0.50 N 20 1 N7 A DG 3 ? ? C8 A DG 3 ? ? N9 A DG 3 ? ? 119.40 113.10 6.30 0.50 N 21 1 C8 A DG 3 ? ? N9 A DG 3 ? ? C4 A DG 3 ? ? 100.51 106.40 -5.89 0.40 N 22 1 C8 A DG 3 ? ? N9 A DG 3 ? ? "C1'" A DG 3 ? ? 135.10 127.00 8.10 1.30 N 23 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DG 4 ? ? 127.05 119.70 7.35 1.20 Y 24 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 109.89 106.80 3.09 0.50 N 25 1 N9 A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 97.55 112.60 -15.05 1.90 N 26 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.76 108.30 4.46 0.30 N 27 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 108.01 111.90 -3.89 0.50 N 28 1 C4 A DG 4 ? ? C5 A DG 4 ? ? N7 A DG 4 ? ? 113.83 110.80 3.03 0.40 N 29 1 C5 A DG 4 ? ? N7 A DG 4 ? ? C8 A DG 4 ? ? 107.96 104.30 3.66 0.50 N 30 1 N7 A DG 4 ? ? C8 A DG 4 ? ? N9 A DG 4 ? ? 107.45 113.10 -5.65 0.50 N 31 1 C8 A DG 4 ? ? N9 A DG 4 ? ? C4 A DG 4 ? ? 111.90 106.40 5.50 0.40 N 32 1 N9 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 98.83 105.40 -6.57 0.40 N 33 1 N3 A DG 4 ? ? C4 A DG 4 ? ? N9 A DG 4 ? ? 133.10 126.00 7.10 0.60 N 34 1 "O4'" A DC 5 ? ? "C4'" A DC 5 ? ? "C3'" A DC 5 ? ? 100.98 104.50 -3.52 0.40 N 35 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 100.46 105.90 -5.44 0.80 N 36 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 119.79 108.30 11.49 0.30 N 37 1 "C1'" A DC 6 ? ? "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? 115.86 110.30 5.56 0.70 N 38 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? "C2'" A DC 6 ? ? 95.53 105.90 -10.37 0.80 N 39 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 117.89 108.30 9.59 0.30 N 40 1 N3 A DC 6 ? ? C4 A DC 6 ? ? N4 A DC 6 ? ? 124.69 118.00 6.69 0.70 N 41 1 C5 A DC 6 ? ? C4 A DC 6 ? ? N4 A DC 6 ? ? 114.75 120.20 -5.45 0.70 N 42 1 "C1'" A DT 7 ? ? "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? 117.94 110.30 7.64 0.70 N 43 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 100.79 105.90 -5.11 0.80 N 44 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 118.03 108.30 9.73 0.30 N 45 1 N3 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 114.89 119.90 -5.01 0.60 N 46 1 C5 A DT 7 ? ? C4 A DT 7 ? ? O4 A DT 7 ? ? 130.59 124.90 5.69 0.70 N 47 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 125.22 119.00 6.22 0.60 N 48 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.32 122.90 -5.58 0.60 N 49 1 "C5'" A DT 8 ? ? "C4'" A DT 8 ? ? "C3'" A DT 8 ? ? 123.85 115.70 8.15 1.20 N 50 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 129.37 108.30 21.07 0.30 N 51 1 C4 A DT 8 ? ? C5 A DT 8 ? ? C6 A DT 8 ? ? 122.23 118.00 4.23 0.60 N 52 1 C5 A DT 8 ? ? C6 A DT 8 ? ? N1 A DT 8 ? ? 119.15 123.70 -4.55 0.60 N 53 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.77 122.90 -4.13 0.60 N 54 1 "C1'" B DA 11 ? ? "O4'" B DA 11 ? ? "C4'" B DA 11 ? ? 115.46 110.30 5.16 0.70 N 55 1 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? "C2'" B DA 11 ? ? 97.27 105.90 -8.63 0.80 N 56 1 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? N9 B DA 11 ? ? 123.08 108.30 14.78 0.30 N 57 1 N1 B DA 11 ? ? C2 B DA 11 ? ? N3 B DA 11 ? ? 134.08 129.30 4.78 0.50 N 58 1 C5 B DA 11 ? ? N7 B DA 11 ? ? C8 B DA 11 ? ? 98.52 103.90 -5.38 0.50 N 59 1 N7 B DA 11 ? ? C8 B DA 11 ? ? N9 B DA 11 ? ? 125.43 113.80 11.63 0.50 N 60 1 C8 B DA 11 ? ? N9 B DA 11 ? ? C4 B DA 11 ? ? 98.46 105.80 -7.34 0.40 N 61 1 C4 B DA 11 ? ? N9 B DA 11 ? ? "C1'" B DA 11 ? ? 138.16 126.30 11.86 1.80 N 62 1 "C5'" B DA 12 ? ? "C4'" B DA 12 ? ? "O4'" B DA 12 ? ? 116.76 109.80 6.96 1.10 N 63 1 "C4'" B DA 12 ? ? "C3'" B DA 12 ? ? "O3'" B DA 12 ? ? 85.35 109.70 -24.35 2.50 N 64 1 N9 B DA 12 ? ? "C1'" B DA 12 ? ? "C2'" B DA 12 ? ? 123.45 114.30 9.15 1.40 N 65 1 "O4'" B DA 12 ? ? "C1'" B DA 12 ? ? N9 B DA 12 ? ? 121.94 108.30 13.64 0.30 N 66 1 N1 B DA 12 ? ? C6 B DA 12 ? ? N6 B DA 12 ? ? 112.43 118.60 -6.17 0.60 N 67 1 C5 B DA 12 ? ? C6 B DA 12 ? ? N6 B DA 12 ? ? 129.09 123.70 5.39 0.80 N 68 1 "C3'" B DA 12 ? ? "O3'" B DA 12 ? ? P B DG 13 ? ? 133.80 119.70 14.10 1.20 Y 69 1 "C3'" B DG 13 ? ? "C2'" B DG 13 ? ? "C1'" B DG 13 ? ? 111.70 102.50 9.20 1.20 N 70 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? "C2'" B DG 13 ? ? 96.17 105.90 -9.73 0.80 N 71 1 "O4'" B DG 13 ? ? "C1'" B DG 13 ? ? N9 B DG 13 ? ? 120.71 108.30 12.41 0.30 N 72 1 C5 B DG 13 ? ? N7 B DG 13 ? ? C8 B DG 13 ? ? 100.79 104.30 -3.51 0.50 N 73 1 N7 B DG 13 ? ? C8 B DG 13 ? ? N9 B DG 13 ? ? 120.27 113.10 7.17 0.50 N 74 1 C8 B DG 13 ? ? N9 B DG 13 ? ? C4 B DG 13 ? ? 100.15 106.40 -6.25 0.40 N 75 1 "C3'" B DG 13 ? ? "O3'" B DG 13 ? ? P B DG 14 ? ? 127.04 119.70 7.34 1.20 Y 76 1 "O4'" B DG 14 ? ? "C4'" B DG 14 ? ? "C3'" B DG 14 ? ? 101.93 104.50 -2.57 0.40 N 77 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 110.13 106.80 3.33 0.50 N 78 1 N9 B DG 14 ? ? "C1'" B DG 14 ? ? "C2'" B DG 14 ? ? 97.46 112.60 -15.14 1.90 N 79 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 113.59 108.30 5.29 0.30 N 80 1 C2 B DG 14 ? ? N3 B DG 14 ? ? C4 B DG 14 ? ? 107.75 111.90 -4.15 0.50 N 81 1 C4 B DG 14 ? ? C5 B DG 14 ? ? N7 B DG 14 ? ? 113.83 110.80 3.03 0.40 N 82 1 C5 B DG 14 ? ? N7 B DG 14 ? ? C8 B DG 14 ? ? 107.66 104.30 3.36 0.50 N 83 1 N7 B DG 14 ? ? C8 B DG 14 ? ? N9 B DG 14 ? ? 107.84 113.10 -5.26 0.50 N 84 1 C8 B DG 14 ? ? N9 B DG 14 ? ? C4 B DG 14 ? ? 111.90 106.40 5.50 0.40 N 85 1 N9 B DG 14 ? ? C4 B DG 14 ? ? C5 B DG 14 ? ? 98.75 105.40 -6.65 0.40 N 86 1 N3 B DG 14 ? ? C4 B DG 14 ? ? N9 B DG 14 ? ? 133.10 126.00 7.10 0.60 N 87 1 "O4'" B DC 15 ? ? "C4'" B DC 15 ? ? "C3'" B DC 15 ? ? 101.09 104.50 -3.41 0.40 N 88 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? "C2'" B DC 15 ? ? 100.51 105.90 -5.39 0.80 N 89 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 119.75 108.30 11.45 0.30 N 90 1 "C1'" B DC 16 ? ? "O4'" B DC 16 ? ? "C4'" B DC 16 ? ? 115.48 110.30 5.18 0.70 N 91 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? "C2'" B DC 16 ? ? 95.81 105.90 -10.09 0.80 N 92 1 "O4'" B DC 16 ? ? "C1'" B DC 16 ? ? N1 B DC 16 ? ? 117.85 108.30 9.55 0.30 N 93 1 N3 B DC 16 ? ? C4 B DC 16 ? ? N4 B DC 16 ? ? 125.06 118.00 7.06 0.70 N 94 1 C5 B DC 16 ? ? C4 B DC 16 ? ? N4 B DC 16 ? ? 114.85 120.20 -5.35 0.70 N 95 1 "C1'" B DT 17 ? ? "O4'" B DT 17 ? ? "C4'" B DT 17 ? ? 117.65 110.30 7.35 0.70 N 96 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? "C2'" B DT 17 ? ? 100.82 105.90 -5.08 0.80 N 97 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 118.22 108.30 9.92 0.30 N 98 1 N3 B DT 17 ? ? C4 B DT 17 ? ? O4 B DT 17 ? ? 115.24 119.90 -4.66 0.60 N 99 1 C5 B DT 17 ? ? C4 B DT 17 ? ? O4 B DT 17 ? ? 130.26 124.90 5.36 0.70 N 100 1 C4 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 125.46 119.00 6.46 0.60 N 101 1 C6 B DT 17 ? ? C5 B DT 17 ? ? C7 B DT 17 ? ? 117.74 122.90 -5.16 0.60 N 102 1 "O4'" B DT 18 ? ? "C1'" B DT 18 ? ? N1 B DT 18 ? ? 129.39 108.30 21.09 0.30 N 103 1 C4 B DT 18 ? ? C5 B DT 18 ? ? C6 B DT 18 ? ? 122.13 118.00 4.13 0.60 N 104 1 C5 B DT 18 ? ? C6 B DT 18 ? ? N1 B DT 18 ? ? 119.30 123.70 -4.40 0.60 N 105 1 C6 B DT 18 ? ? C5 B DT 18 ? ? C7 B DT 18 ? ? 118.94 122.90 -3.96 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 1 ? ? 0.098 'SIDE CHAIN' 2 1 DC A 5 ? ? 0.074 'SIDE CHAIN' 3 1 DC A 6 ? ? 0.092 'SIDE CHAIN' 4 1 DA B 11 ? ? 0.099 'SIDE CHAIN' 5 1 DC B 15 ? ? 0.074 'SIDE CHAIN' 6 1 DC B 16 ? ? 0.091 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 1D83 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 8 1_555 0.356 -0.212 -1.256 -18.128 11.369 -6.534 1 A_DA1:DT18_B A 1 ? B 18 ? 20 1 1 A DA 2 1_555 B DT 7 1_555 0.338 0.064 -0.083 7.583 22.375 2.349 2 A_DA2:DT17_B A 2 ? B 17 ? 20 1 1 A DG 3 1_555 B DC 6 1_555 -0.644 -0.499 0.000 31.514 12.267 -9.401 3 A_DG3:DC16_B A 3 ? B 16 ? 19 1 1 A DG 4 1_555 B DC 5 1_555 -0.091 -1.238 1.967 9.564 -5.484 -5.922 4 A_DG4:DC15_B A 4 ? B 15 ? 19 1 1 A DC 5 1_555 B DG 4 1_555 0.095 -1.223 1.974 -9.968 -5.292 -5.902 5 A_DC5:DG14_B A 5 ? B 14 ? 19 1 1 A DC 6 1_555 B DG 3 1_555 0.685 -0.470 0.022 -31.815 12.629 -9.377 6 A_DC6:DG13_B A 6 ? B 13 ? 19 1 1 A DT 7 1_555 B DA 2 1_555 -0.260 0.089 -0.053 -7.924 22.780 2.336 7 A_DT7:DA12_B A 7 ? B 12 ? 20 1 1 A DT 8 1_555 B DA 1 1_555 -0.250 -0.226 -1.256 18.221 11.835 -6.662 8 A_DT8:DA11_B A 8 ? B 11 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 8 1_555 A DA 2 1_555 B DT 7 1_555 0.280 -0.854 3.352 -8.238 -14.021 27.907 1.159 -2.090 3.207 -26.424 15.525 32.218 1 AA_DA1DA2:DT17DT18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A DA 2 1_555 B DT 7 1_555 A DG 3 1_555 B DC 6 1_555 -0.714 -1.240 2.744 -2.586 5.534 22.535 -4.591 1.051 2.439 13.837 6.466 23.337 2 AA_DA2DG3:DC16DT17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DG 3 1_555 B DC 6 1_555 A DG 4 1_555 B DC 5 1_555 0.892 -1.748 4.966 -7.446 -9.647 34.697 -0.711 -3.009 4.972 -15.592 12.036 36.712 3 AA_DG3DG4:DC15DC16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DG 4 1_555 B DC 5 1_555 A DC 5 1_555 B DG 4 1_555 0.001 -2.737 3.913 0.030 6.510 33.859 -5.753 0.004 3.344 11.052 -0.051 34.462 4 AA_DG4DC5:DG14DC15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A DC 5 1_555 B DG 4 1_555 A DC 6 1_555 B DG 3 1_555 -0.892 -1.753 4.966 7.404 -9.606 34.701 -0.727 3.002 4.975 -15.530 -11.969 36.698 5 AA_DC5DC6:DG13DG14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DC 6 1_555 B DG 3 1_555 A DT 7 1_555 B DA 2 1_555 0.713 -1.238 2.749 2.551 5.544 22.565 -4.584 -1.059 2.443 13.845 -6.372 23.365 6 AA_DC6DT7:DA12DG13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A DT 7 1_555 B DA 2 1_555 A DT 8 1_555 B DA 1 1_555 -0.287 -0.860 3.346 8.313 -14.086 27.868 1.154 2.113 3.199 -26.550 -15.669 32.231 7 AA_DT7DT8:DA11DA12_BB A 7 ? B 12 ? A 8 ? B 11 ? # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 CDR 1 C CDR 1 ? CDR 24 n C 2 CDR 2 C CDR 2 ? CDR 25 n C 2 ERI 3 C ERI 3 ? ERI 26 n D 3 ARI 1 D ARI 1 ? ARI 32 n D 3 1GL 2 D 1GL 2 ? BRI 31 n E 3 ARI 1 E ARI 1 ? ARI 22 n E 3 1GL 2 E 1GL 2 ? BRI 21 n F 2 CDR 1 F CDR 1 ? CDR 34 n F 2 CDR 2 F CDR 2 ? CDR 35 n F 2 ERI 3 F ERI 3 ? ERI 36 n # _pdbx_chem_comp_identifier.comp_id 1GL _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier a-D-2-deoxy-Fucp4OMe # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,3,2/[ad222m-1b_1-5][ad611m-1a_1-5_3*C_4*OCC/3=O]/1-1-2/a3-b1_b3-c1' WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-2,6-deoxy-Glcp]{[(3+1)][b-D-2,6-deoxy-Glcp]{[(3+1)][a-L-2,6-deoxy-Glcp4Ac]{}}}' LINUCS PDB-CARE ? 3 3 'WURCS=2.0/2,2,1/[ad212m-1b_1-5_4*OCC/3=O][ad112m-1a_1-5_4*OC]/1-2/a3-b1' WURCS PDB2Glycan 1.1.0 4 3 '[][b-D-2-deoxy-Fucp4Ac]{[(3+1)][a-D-2-deoxy-Fucp4Me]{}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 1 CDR C3 H3 2 CDR O1 HO1 sing ? 2 2 2 CDR C3 H3 3 ERI O1 HO1 sing ? 3 3 1 ARI C3 H3 2 1GL O1 HO1 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 CDR 1 n 2 CDR 2 n 2 ERI 3 n 3 ARI 1 n 3 1GL 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 '(1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10-tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-D-xylulose' CPH 5 'MAGNESIUM ION' MG #