data_1D8X
# 
_entry.id   1D8X 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.386 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1D8X         pdb_00001d8x 10.2210/pdb1d8x/pdb 
NDB   BD0024       ?            ?                   
RCSB  RCSB009901   ?            ?                   
WWPDB D_1000009901 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 1999-11-05 
2 'Structure model' 1 1 2008-04-27 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2017-10-04 
5 'Structure model' 1 4 2024-02-07 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Version format compliance' 
2 3 'Structure model' 'Version format compliance' 
3 4 'Structure model' 'Refinement description'    
4 5 'Structure model' 'Data collection'           
5 5 'Structure model' 'Database references'       
6 5 'Structure model' 'Derived calculations'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' software               
2 5 'Structure model' chem_comp_atom         
3 5 'Structure model' chem_comp_bond         
4 5 'Structure model' database_2             
5 5 'Structure model' pdbx_struct_conn_angle 
6 5 'Structure model' struct_conn            
7 5 'Structure model' struct_site            
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  5 'Structure model' '_database_2.pdbx_DOI'                        
2  5 'Structure model' '_database_2.pdbx_database_accession'         
3  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'  
4  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'   
5  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 
6  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 
7  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 
8  5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'  
9  5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'  
10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'   
11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 
12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 
13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 
14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'  
15 5 'Structure model' '_pdbx_struct_conn_angle.value'               
16 5 'Structure model' '_struct_conn.pdbx_dist_value'                
17 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'             
18 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'              
19 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'            
20 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'            
21 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'            
22 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'             
23 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'             
24 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'              
25 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'            
26 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'            
27 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'            
28 5 'Structure model' '_struct_conn.ptnr2_label_seq_id'             
29 5 'Structure model' '_struct_site.pdbx_auth_asym_id'              
30 5 'Structure model' '_struct_site.pdbx_auth_comp_id'              
31 5 'Structure model' '_struct_site.pdbx_auth_seq_id'               
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1D8X 
_pdbx_database_status.recvd_initial_deposition_date   1999-10-26 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
_pdbx_database_related.db_name        NDB 
_pdbx_database_related.db_id          BD0025 
_pdbx_database_related.details        'CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS' 
_pdbx_database_related.content_type   unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Gao, Y.-G.'     1 
'Robinson, H.'   2 
'Sanishvili, R.' 3 
'Joachimiak, A.' 4 
'Wang, A.H.-J.'  5 
# 
_citation.id                        primary 
_citation.title                     
'Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution.' 
_citation.journal_abbrev            Biochemistry 
_citation.journal_volume            38 
_citation.page_first                16452 
_citation.page_last                 16460 
_citation.year                      1999 
_citation.journal_id_ASTM           BICHAW 
_citation.country                   US 
_citation.journal_id_ISSN           0006-2960 
_citation.journal_id_CSD            0033 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   10600106 
_citation.pdbx_database_id_DOI      10.1021/bi9914614 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Gao, Y.G.'      1 ? 
primary 'Robinson, H.'   2 ? 
primary 'Sanishvili, R.' 3 ? 
primary 'Joachimiak, A.' 4 ? 
primary 'Wang, A.H.'     5 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-D(*CP*CP*GP*AP*AP*TP*GP*AP*GP*G)-3'" 3094.042 2   ? ? ? ? 
2 non-polymer syn 'MAGNESIUM ION'                          24.305   2   ? ? ? ? 
3 non-polymer syn 'COBALT HEXAMMINE(III)'                  161.116  1   ? ? ? ? 
4 water       nat water                                    18.015   138 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DC)(DG)(DA)(DA)(DT)(DG)(DA)(DG)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CCGAATGAGG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
2 'MAGNESIUM ION'         MG  
3 'COBALT HEXAMMINE(III)' NCO 
4 water                   HOH 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DC n 
1 3  DG n 
1 4  DA n 
1 5  DA n 
1 6  DT n 
1 7  DG n 
1 8  DA n 
1 9  DG n 
1 10 DG n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
HOH non-polymer   . WATER                                ? 'H2 O'            18.015  
MG  non-polymer   . 'MAGNESIUM ION'                      ? 'Mg 2'            24.305  
NCO non-polymer   . 'COBALT HEXAMMINE(III)'              ? 'Co H18 N6 3'     161.116 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC C A . n 
A 1 2  DC 2  2  2  DC C A . n 
A 1 3  DG 3  3  3  DG G A . n 
A 1 4  DA 4  4  4  DA A A . n 
A 1 5  DA 5  5  5  DA A A . n 
A 1 6  DT 6  6  6  DT T A . n 
A 1 7  DG 7  7  7  DG G A . n 
A 1 8  DA 8  8  8  DA A A . n 
A 1 9  DG 9  9  9  DG G A . n 
A 1 10 DG 10 10 10 DG G A . n 
B 1 1  DC 1  11 11 DC C B . n 
B 1 2  DC 2  12 12 DC C B . n 
B 1 3  DG 3  13 13 DG G B . n 
B 1 4  DA 4  14 14 DA A B . n 
B 1 5  DA 5  15 15 DA A B . n 
B 1 6  DT 6  16 16 DT T B . n 
B 1 7  DG 7  17 17 DG G B . n 
B 1 8  DA 8  18 18 DA A B . n 
B 1 9  DG 9  19 19 DG G B . n 
B 1 10 DG 10 20 20 DG G B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 2 MG  1  22  22  MG  MO5 A . 
D 2 MG  1  23  23  MG  MO5 A . 
E 3 NCO 1  21  21  NCO NCO A . 
F 4 HOH 1  100 100 HOH HOH A . 
F 4 HOH 2  101 101 HOH HOH A . 
F 4 HOH 3  102 102 HOH HOH A . 
F 4 HOH 4  105 105 HOH HOH A . 
F 4 HOH 5  107 107 HOH HOH A . 
F 4 HOH 6  110 110 HOH HOH A . 
F 4 HOH 7  111 111 HOH HOH A . 
F 4 HOH 8  114 114 HOH HOH A . 
F 4 HOH 9  115 115 HOH HOH A . 
F 4 HOH 10 116 116 HOH HOH A . 
F 4 HOH 11 117 117 HOH HOH A . 
F 4 HOH 12 118 118 HOH HOH A . 
F 4 HOH 13 119 119 HOH HOH A . 
F 4 HOH 14 120 120 HOH HOH A . 
F 4 HOH 15 121 121 HOH HOH A . 
F 4 HOH 16 122 122 HOH HOH A . 
F 4 HOH 17 123 123 HOH HOH A . 
F 4 HOH 18 124 124 HOH HOH A . 
F 4 HOH 19 126 126 HOH HOH A . 
F 4 HOH 20 131 131 HOH HOH A . 
F 4 HOH 21 134 134 HOH HOH A . 
F 4 HOH 22 135 135 HOH HOH A . 
F 4 HOH 23 137 137 HOH HOH A . 
F 4 HOH 24 140 140 HOH HOH A . 
F 4 HOH 25 143 143 HOH HOH A . 
F 4 HOH 26 144 144 HOH HOH A . 
F 4 HOH 27 146 146 HOH HOH A . 
F 4 HOH 28 147 147 HOH HOH A . 
F 4 HOH 29 148 148 HOH HOH A . 
F 4 HOH 30 152 152 HOH HOH A . 
F 4 HOH 31 155 155 HOH HOH A . 
F 4 HOH 32 156 156 HOH HOH A . 
F 4 HOH 33 157 157 HOH HOH A . 
F 4 HOH 34 158 158 HOH HOH A . 
F 4 HOH 35 160 160 HOH HOH A . 
F 4 HOH 36 161 161 HOH HOH A . 
F 4 HOH 37 162 162 HOH HOH A . 
F 4 HOH 38 165 165 HOH HOH A . 
F 4 HOH 39 167 167 HOH HOH A . 
F 4 HOH 40 168 168 HOH HOH A . 
F 4 HOH 41 170 170 HOH HOH A . 
F 4 HOH 42 171 171 HOH HOH A . 
F 4 HOH 43 172 172 HOH HOH A . 
F 4 HOH 44 173 173 HOH HOH A . 
F 4 HOH 45 174 174 HOH HOH A . 
F 4 HOH 46 175 175 HOH HOH A . 
F 4 HOH 47 176 176 HOH HOH A . 
F 4 HOH 48 178 178 HOH HOH A . 
F 4 HOH 49 183 183 HOH HOH A . 
F 4 HOH 50 184 184 HOH HOH A . 
F 4 HOH 51 185 185 HOH HOH A . 
F 4 HOH 52 188 188 HOH HOH A . 
F 4 HOH 53 190 190 HOH HOH A . 
F 4 HOH 54 191 191 HOH HOH A . 
F 4 HOH 55 192 192 HOH HOH A . 
F 4 HOH 56 193 193 HOH HOH A . 
F 4 HOH 57 195 195 HOH HOH A . 
F 4 HOH 58 199 199 HOH HOH A . 
F 4 HOH 59 200 200 HOH HOH A . 
F 4 HOH 60 201 201 HOH HOH A . 
F 4 HOH 61 202 202 HOH HOH A . 
F 4 HOH 62 204 204 HOH HOH A . 
F 4 HOH 63 206 206 HOH HOH A . 
F 4 HOH 64 208 208 HOH HOH A . 
F 4 HOH 65 209 209 HOH HOH A . 
F 4 HOH 66 210 210 HOH HOH A . 
F 4 HOH 67 211 211 HOH HOH A . 
F 4 HOH 68 213 213 HOH HOH A . 
F 4 HOH 69 214 214 HOH HOH A . 
F 4 HOH 70 215 215 HOH HOH A . 
F 4 HOH 71 217 217 HOH HOH A . 
F 4 HOH 72 221 221 HOH HOH A . 
F 4 HOH 73 224 224 HOH HOH A . 
F 4 HOH 74 225 225 HOH HOH A . 
F 4 HOH 75 228 22  HOH MO5 A . 
F 4 HOH 76 229 22  HOH MO5 A . 
F 4 HOH 77 230 22  HOH MO5 A . 
F 4 HOH 78 231 22  HOH MO5 A . 
F 4 HOH 79 232 22  HOH MO5 A . 
F 4 HOH 80 233 23  HOH MO5 A . 
F 4 HOH 81 234 23  HOH MO5 A . 
F 4 HOH 82 235 23  HOH MO5 A . 
F 4 HOH 83 236 23  HOH MO5 A . 
F 4 HOH 84 237 23  HOH MO5 A . 
G 4 HOH 1  103 103 HOH HOH B . 
G 4 HOH 2  104 104 HOH HOH B . 
G 4 HOH 3  106 106 HOH HOH B . 
G 4 HOH 4  108 108 HOH HOH B . 
G 4 HOH 5  109 109 HOH HOH B . 
G 4 HOH 6  112 112 HOH HOH B . 
G 4 HOH 7  113 113 HOH HOH B . 
G 4 HOH 8  125 125 HOH HOH B . 
G 4 HOH 9  127 127 HOH HOH B . 
G 4 HOH 10 128 128 HOH HOH B . 
G 4 HOH 11 129 129 HOH HOH B . 
G 4 HOH 12 130 130 HOH HOH B . 
G 4 HOH 13 132 132 HOH HOH B . 
G 4 HOH 14 133 133 HOH HOH B . 
G 4 HOH 15 136 136 HOH HOH B . 
G 4 HOH 16 138 138 HOH HOH B . 
G 4 HOH 17 139 139 HOH HOH B . 
G 4 HOH 18 141 141 HOH HOH B . 
G 4 HOH 19 142 142 HOH HOH B . 
G 4 HOH 20 145 145 HOH HOH B . 
G 4 HOH 21 149 149 HOH HOH B . 
G 4 HOH 22 150 150 HOH HOH B . 
G 4 HOH 23 151 151 HOH HOH B . 
G 4 HOH 24 153 153 HOH HOH B . 
G 4 HOH 25 154 154 HOH HOH B . 
G 4 HOH 26 159 159 HOH HOH B . 
G 4 HOH 27 163 163 HOH HOH B . 
G 4 HOH 28 164 164 HOH HOH B . 
G 4 HOH 29 166 166 HOH HOH B . 
G 4 HOH 30 169 169 HOH HOH B . 
G 4 HOH 31 177 177 HOH HOH B . 
G 4 HOH 32 179 179 HOH HOH B . 
G 4 HOH 33 180 180 HOH HOH B . 
G 4 HOH 34 181 181 HOH HOH B . 
G 4 HOH 35 182 182 HOH HOH B . 
G 4 HOH 36 186 186 HOH HOH B . 
G 4 HOH 37 187 187 HOH HOH B . 
G 4 HOH 38 189 189 HOH HOH B . 
G 4 HOH 39 194 194 HOH HOH B . 
G 4 HOH 40 196 196 HOH HOH B . 
G 4 HOH 41 197 197 HOH HOH B . 
G 4 HOH 42 198 198 HOH HOH B . 
G 4 HOH 43 203 203 HOH HOH B . 
G 4 HOH 44 205 205 HOH HOH B . 
G 4 HOH 45 207 207 HOH HOH B . 
G 4 HOH 46 212 212 HOH HOH B . 
G 4 HOH 47 216 216 HOH HOH B . 
G 4 HOH 48 218 218 HOH HOH B . 
G 4 HOH 49 219 219 HOH HOH B . 
G 4 HOH 50 220 220 HOH HOH B . 
G 4 HOH 51 222 222 HOH HOH B . 
G 4 HOH 52 223 223 HOH HOH B . 
G 4 HOH 53 226 226 HOH HOH B . 
G 4 HOH 54 227 227 HOH HOH B . 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
X-PLOR    'model building' .        ? 1 
SHELXL-97 refinement       .        ? 2 
d*TREK    'data scaling'   'V. 5.1' ? 3 
X-PLOR    phasing          .        ? 4 
# 
_cell.entry_id           1D8X 
_cell.length_a           62.784 
_cell.length_b           35.685 
_cell.length_c           22.466 
_cell.angle_alpha        90.00 
_cell.angle_beta         104.38 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1D8X 
_symmetry.space_group_name_H-M             'C 1 2 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     monoclinic 
_symmetry.Int_Tables_number                5 
# 
_exptl.entry_id          1D8X 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      1.83 
_exptl_crystal.density_percent_sol   33.0 
_exptl_crystal.description           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION' 
_exptl_crystal_grow.temp            298 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              7.5 
_exptl_crystal_grow.pdbx_details    'MPD, COBALT HEXAMMINE, MGCL2, TRIS, pH 7.5, VAPOR DIFFUSION, temperature 298K' 
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
loop_
_exptl_crystal_grow_comp.crystal_id 
_exptl_crystal_grow_comp.id 
_exptl_crystal_grow_comp.sol_id 
_exptl_crystal_grow_comp.name 
_exptl_crystal_grow_comp.volume 
_exptl_crystal_grow_comp.conc 
_exptl_crystal_grow_comp.details 
1 1 1 'COBALT HEXAMMINE' ? ? ? 
1 2 1 MGCL2              ? ? ? 
1 3 1 TRIS               ? ? ? 
1 4 1 MPD                ? ? ? 
1 5 2 MPD                ? ? ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           123 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               'IMAGE PLATE' 
_diffrn_detector.type                   'RIGAKU RAXIS IIC' 
_diffrn_detector.pdbx_collection_date   1998-02-06 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   1.5418 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      'ROTATING ANODE' 
_diffrn_source.type                        'RIGAKU RU200' 
_diffrn_source.pdbx_synchrotron_site       ? 
_diffrn_source.pdbx_synchrotron_beamline   ? 
_diffrn_source.pdbx_wavelength             1.5418 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_reflns.entry_id                     1D8X 
_reflns.observed_criterion_sigma_I   0.0 
_reflns.observed_criterion_sigma_F   0.0 
_reflns.d_resolution_low             20.0 
_reflns.d_resolution_high            1.20 
_reflns.number_obs                   12550 
_reflns.number_all                   12550 
_reflns.percent_possible_obs         81.7 
_reflns.pdbx_Rmerge_I_obs            0.0450000 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        16.5 
_reflns.B_iso_Wilson_estimate        31.9 
_reflns.pdbx_redundancy              1.6 
_reflns.pdbx_diffrn_id               1 
_reflns.pdbx_ordinal                 1 
# 
_reflns_shell.d_res_high             1.20 
_reflns_shell.d_res_low              1.24 
_reflns_shell.percent_possible_all   46.8 
_reflns_shell.Rmerge_I_obs           0.3900000 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    3.7 
_reflns_shell.pdbx_redundancy        1.25 
_reflns_shell.pdbx_diffrn_id         ? 
_reflns_shell.pdbx_ordinal           1 
# 
_refine.entry_id                                 1D8X 
_refine.ls_number_reflns_obs                     ? 
_refine.ls_number_reflns_all                     12550 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          0.0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             20.0 
_refine.ls_d_res_high                            1.20 
_refine.ls_percent_reflns_obs                    81.7 
_refine.ls_R_factor_obs                          0.1880000 
_refine.ls_R_factor_all                          0.1880000 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       0.2460000 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 5 
_refine.ls_number_reflns_R_free                  633 
_refine.ls_number_parameters                     4386 
_refine.ls_number_restraints                     5330 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    'SHELXL SWAT OPTION' 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_ls_cross_valid_method               'A POSTERIORI' 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'G.PARKINSON, J.VOJTECHOVSKY, L.CLOWNEY, A.T.BRUNGER, H.M.BERMAN' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.overall_SU_B                             ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        1D8X 
_refine_analyze.Luzzati_coordinate_error_obs    ? 
_refine_analyze.Luzzati_sigma_a_obs             ? 
_refine_analyze.Luzzati_d_res_low_obs           ? 
_refine_analyze.Luzzati_coordinate_error_free   ? 
_refine_analyze.Luzzati_sigma_a_free            ? 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      0 
_refine_analyze.occupancy_sum_hydrogen          ? 
_refine_analyze.occupancy_sum_non_hydrogen      ? 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   412 
_refine_hist.pdbx_number_atoms_ligand         19 
_refine_hist.number_atoms_solvent             128 
_refine_hist.number_atoms_total               559 
_refine_hist.d_res_high                       1.20 
_refine_hist.d_res_low                        20.0 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
s_bond_d               0.010 ? ? ? 'X-RAY DIFFRACTION' ? 
s_angle_d              0.029 ? ? ? 'X-RAY DIFFRACTION' ? 
s_similar_dist         ?     ? ? ? 'X-RAY DIFFRACTION' ? 
s_from_restr_planes    0.073 ? ? ? 'X-RAY DIFFRACTION' ? 
s_zero_chiral_vol      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
s_non_zero_chiral_vol  ?     ? ? ? 'X-RAY DIFFRACTION' ? 
s_anti_bump_dis_restr  0.007 ? ? ? 'X-RAY DIFFRACTION' ? 
s_rigid_bond_adp_cmpnt 0.004 ? ? ? 'X-RAY DIFFRACTION' ? 
s_similar_adp_cmpnt    0.044 ? ? ? 'X-RAY DIFFRACTION' ? 
s_approx_iso_adps      ?     ? ? ? 'X-RAY DIFFRACTION' ? 
# 
_pdbx_refine.entry_id                                    1D8X 
_pdbx_refine.R_factor_all_no_cutoff                      ? 
_pdbx_refine.R_factor_obs_no_cutoff                      ? 
_pdbx_refine.free_R_factor_no_cutoff                     ? 
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff     ? 
_pdbx_refine.free_R_val_test_set_ct_no_cutoff            ? 
_pdbx_refine.R_factor_all_4sig_cutoff                    0.1820000 
_pdbx_refine.R_factor_obs_4sig_cutoff                    0.1820000 
_pdbx_refine.free_R_factor_4sig_cutoff                   0.2380000 
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff   5 
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff          566 
_pdbx_refine.number_reflns_obs_4sig_cutoff               11236 
_pdbx_refine.pdbx_refine_id                              'X-RAY DIFFRACTION' 
_pdbx_refine.free_R_error_no_cutoff                      ? 
# 
_database_PDB_matrix.entry_id          1D8X 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1D8X 
_struct.title                     'CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1D8X 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'TANDEM GA BASE PAIRS, GA MISMATCH, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
D N N 2 ? 
E N N 3 ? 
F N N 4 ? 
G N N 4 ? 
# 
_struct_ref.id                         1 
_struct_ref.entity_id                  1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    1D8X 
_struct_ref.pdbx_db_accession          1D8X 
_struct_ref.pdbx_db_isoform            ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_align_begin           ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1D8X A 1 ? 10 ? 1D8X 1  ? 10 ? 1  10 
2 1 1D8X B 1 ? 10 ? 1D8X 11 ? 20 ? 11 20 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id   1 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
metalc1  metalc ? ? A DA 5  OP2 ? ? ? 1_555 C MG  .  MG ? ? A DA 5  A MG  22  1_555 ? ? ? ? ? ? ?            1.969 ? ? 
metalc2  metalc ? ? A DG 9  OP1 ? ? ? 1_555 D MG  .  MG ? ? A DG 9  A MG  23  1_555 ? ? ? ? ? ? ?            2.080 ? ? 
metalc3  metalc ? ? C MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 22 A HOH 228 1_555 ? ? ? ? ? ? ?            2.066 ? ? 
metalc4  metalc ? ? C MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 22 A HOH 229 1_555 ? ? ? ? ? ? ?            2.042 ? ? 
metalc5  metalc ? ? C MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 22 A HOH 230 1_555 ? ? ? ? ? ? ?            2.072 ? ? 
metalc6  metalc ? ? C MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 22 A HOH 231 1_555 ? ? ? ? ? ? ?            2.073 ? ? 
metalc7  metalc ? ? C MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 22 A HOH 232 1_555 ? ? ? ? ? ? ?            2.054 ? ? 
metalc8  metalc ? ? D MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 23 A HOH 233 1_555 ? ? ? ? ? ? ?            2.031 ? ? 
metalc9  metalc ? ? D MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 23 A HOH 234 1_555 ? ? ? ? ? ? ?            2.061 ? ? 
metalc10 metalc ? ? D MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 23 A HOH 235 1_555 ? ? ? ? ? ? ?            2.039 ? ? 
metalc11 metalc ? ? D MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 23 A HOH 236 1_555 ? ? ? ? ? ? ?            2.087 ? ? 
metalc12 metalc ? ? D MG .  MG  ? ? ? 1_555 F HOH .  O  ? ? A MG 23 A HOH 237 1_555 ? ? ? ? ? ? ?            2.077 ? ? 
hydrog1  hydrog ? ? A DC 1  N3  ? ? ? 1_555 B DG  10 N1 ? ? A DC 1  B DG  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ? ? A DC 1  N4  ? ? ? 1_555 B DG  10 O6 ? ? A DC 1  B DG  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ? ? A DC 1  O2  ? ? ? 1_555 B DG  10 N2 ? ? A DC 1  B DG  20  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ? ? A DC 2  N3  ? ? ? 1_555 B DG  9  N1 ? ? A DC 2  B DG  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ? ? A DC 2  N4  ? ? ? 1_555 B DG  9  O6 ? ? A DC 2  B DG  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ? ? A DC 2  O2  ? ? ? 1_555 B DG  9  N2 ? ? A DC 2  B DG  19  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ? ? A DG 3  N2  ? ? ? 1_555 B DA  8  N7 ? ? A DG 3  B DA  18  1_555 ? ? ? ? ? ? TYPE_11_PAIR ?     ? ? 
hydrog8  hydrog ? ? A DG 3  N3  ? ? ? 1_555 B DA  8  N6 ? ? A DG 3  B DA  18  1_555 ? ? ? ? ? ? TYPE_11_PAIR ?     ? ? 
hydrog9  hydrog ? ? A DA 4  N6  ? ? ? 1_555 B DG  7  N3 ? ? A DA 4  B DG  17  1_555 ? ? ? ? ? ? TYPE_11_PAIR ?     ? ? 
hydrog10 hydrog ? ? A DA 4  N7  ? ? ? 1_555 B DG  7  N2 ? ? A DA 4  B DG  17  1_555 ? ? ? ? ? ? TYPE_11_PAIR ?     ? ? 
hydrog11 hydrog ? ? A DA 5  N1  ? ? ? 1_555 B DT  6  N3 ? ? A DA 5  B DT  16  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ? ? A DA 5  N6  ? ? ? 1_555 B DT  6  O4 ? ? A DA 5  B DT  16  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ? ? A DT 6  N3  ? ? ? 1_555 B DA  5  N1 ? ? A DT 6  B DA  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ? ? A DT 6  O4  ? ? ? 1_555 B DA  5  N6 ? ? A DT 6  B DA  15  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ? ? A DG 7  N2  ? ? ? 1_555 B DA  4  N7 ? ? A DG 7  B DA  14  1_555 ? ? ? ? ? ? TYPE_11_PAIR ?     ? ? 
hydrog16 hydrog ? ? A DG 7  N3  ? ? ? 1_555 B DA  4  N6 ? ? A DG 7  B DA  14  1_555 ? ? ? ? ? ? TYPE_11_PAIR ?     ? ? 
hydrog17 hydrog ? ? A DA 8  N6  ? ? ? 1_555 B DG  3  N3 ? ? A DA 8  B DG  13  1_555 ? ? ? ? ? ? TYPE_11_PAIR ?     ? ? 
hydrog18 hydrog ? ? A DA 8  N7  ? ? ? 1_555 B DG  3  N2 ? ? A DA 8  B DG  13  1_555 ? ? ? ? ? ? TYPE_11_PAIR ?     ? ? 
hydrog19 hydrog ? ? A DG 9  N1  ? ? ? 1_555 B DC  2  N3 ? ? A DG 9  B DC  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ? ? A DG 9  N2  ? ? ? 1_555 B DC  2  O2 ? ? A DG 9  B DC  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ? ? A DG 9  O6  ? ? ? 1_555 B DC  2  N4 ? ? A DG 9  B DC  12  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ? ? A DG 10 N1  ? ? ? 1_555 B DC  1  N3 ? ? A DG 10 B DC  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ? ? A DG 10 N2  ? ? ? 1_555 B DC  1  O2 ? ? A DG 10 B DC  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ? ? A DG 10 O6  ? ? ? 1_555 B DC  1  N4 ? ? A DG 10 B DC  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
metalc ? ? 
hydrog ? ? 
# 
loop_
_pdbx_struct_conn_angle.id 
_pdbx_struct_conn_angle.ptnr1_label_atom_id 
_pdbx_struct_conn_angle.ptnr1_label_alt_id 
_pdbx_struct_conn_angle.ptnr1_label_asym_id 
_pdbx_struct_conn_angle.ptnr1_label_comp_id 
_pdbx_struct_conn_angle.ptnr1_label_seq_id 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr1_symmetry 
_pdbx_struct_conn_angle.ptnr2_label_atom_id 
_pdbx_struct_conn_angle.ptnr2_label_alt_id 
_pdbx_struct_conn_angle.ptnr2_label_asym_id 
_pdbx_struct_conn_angle.ptnr2_label_comp_id 
_pdbx_struct_conn_angle.ptnr2_label_seq_id 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr2_symmetry 
_pdbx_struct_conn_angle.ptnr3_label_atom_id 
_pdbx_struct_conn_angle.ptnr3_label_alt_id 
_pdbx_struct_conn_angle.ptnr3_label_asym_id 
_pdbx_struct_conn_angle.ptnr3_label_comp_id 
_pdbx_struct_conn_angle.ptnr3_label_seq_id 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code 
_pdbx_struct_conn_angle.ptnr3_symmetry 
_pdbx_struct_conn_angle.value 
_pdbx_struct_conn_angle.value_esd 
1  OP2 ? A DA  5 ? A DA  5   ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 228 ? 1_555 86.3  ? 
2  OP2 ? A DA  5 ? A DA  5   ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 229 ? 1_555 95.1  ? 
3  O   ? F HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 229 ? 1_555 178.0 ? 
4  OP2 ? A DA  5 ? A DA  5   ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 230 ? 1_555 88.8  ? 
5  O   ? F HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 230 ? 1_555 89.9  ? 
6  O   ? F HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 230 ? 1_555 88.7  ? 
7  OP2 ? A DA  5 ? A DA  5   ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 231 ? 1_555 173.0 ? 
8  O   ? F HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 231 ? 1_555 88.7  ? 
9  O   ? F HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 231 ? 1_555 89.8  ? 
10 O   ? F HOH . ? A HOH 230 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 231 ? 1_555 86.3  ? 
11 OP2 ? A DA  5 ? A DA  5   ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 232 ? 1_555 95.6  ? 
12 O   ? F HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 232 ? 1_555 91.5  ? 
13 O   ? F HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 232 ? 1_555 89.8  ? 
14 O   ? F HOH . ? A HOH 230 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 232 ? 1_555 175.5 ? 
15 O   ? F HOH . ? A HOH 231 ? 1_555 MG ? C MG . ? A MG 22 ? 1_555 O ? F HOH . ? A HOH 232 ? 1_555 89.4  ? 
16 OP1 ? A DG  9 ? A DG  9   ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 233 ? 1_555 87.6  ? 
17 OP1 ? A DG  9 ? A DG  9   ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 234 ? 1_555 89.6  ? 
18 O   ? F HOH . ? A HOH 233 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 234 ? 1_555 173.2 ? 
19 OP1 ? A DG  9 ? A DG  9   ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 235 ? 1_555 89.9  ? 
20 O   ? F HOH . ? A HOH 233 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 235 ? 1_555 95.6  ? 
21 O   ? F HOH . ? A HOH 234 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 235 ? 1_555 90.6  ? 
22 OP1 ? A DG  9 ? A DG  9   ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 175.6 ? 
23 O   ? F HOH . ? A HOH 233 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 93.4  ? 
24 O   ? F HOH . ? A HOH 234 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 89.9  ? 
25 O   ? F HOH . ? A HOH 235 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 236 ? 1_555 85.8  ? 
26 OP1 ? A DG  9 ? A DG  9   ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 237 ? 1_555 97.8  ? 
27 O   ? F HOH . ? A HOH 233 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 237 ? 1_555 85.1  ? 
28 O   ? F HOH . ? A HOH 234 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 237 ? 1_555 89.2  ? 
29 O   ? F HOH . ? A HOH 235 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 237 ? 1_555 172.4 ? 
30 O   ? F HOH . ? A HOH 236 ? 1_555 MG ? D MG . ? A MG 23 ? 1_555 O ? F HOH . ? A HOH 237 ? 1_555 86.6  ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A MG  22 ? 6 'BINDING SITE FOR RESIDUE MG A 22'  
AC2 Software A MG  23 ? 6 'BINDING SITE FOR RESIDUE MG A 23'  
AC3 Software A NCO 21 ? 9 'BINDING SITE FOR RESIDUE NCO A 21' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1  AC1 6 DA  A 5 ? DA  A 5   . ? 1_555 ? 
2  AC1 6 HOH F . ? HOH A 228 . ? 1_555 ? 
3  AC1 6 HOH F . ? HOH A 229 . ? 1_555 ? 
4  AC1 6 HOH F . ? HOH A 230 . ? 1_555 ? 
5  AC1 6 HOH F . ? HOH A 231 . ? 1_555 ? 
6  AC1 6 HOH F . ? HOH A 232 . ? 1_555 ? 
7  AC2 6 DG  A 9 ? DG  A 9   . ? 1_555 ? 
8  AC2 6 HOH F . ? HOH A 233 . ? 1_555 ? 
9  AC2 6 HOH F . ? HOH A 234 . ? 1_555 ? 
10 AC2 6 HOH F . ? HOH A 235 . ? 1_555 ? 
11 AC2 6 HOH F . ? HOH A 236 . ? 1_555 ? 
12 AC2 6 HOH F . ? HOH A 237 . ? 1_555 ? 
13 AC3 9 DG  A 3 ? DG  A 3   . ? 1_556 ? 
14 AC3 9 DT  A 6 ? DT  A 6   . ? 1_555 ? 
15 AC3 9 DG  A 7 ? DG  A 7   . ? 1_555 ? 
16 AC3 9 HOH F . ? HOH A 167 . ? 1_555 ? 
17 AC3 9 HOH F . ? HOH A 170 . ? 1_555 ? 
18 AC3 9 HOH F . ? HOH A 209 . ? 1_555 ? 
19 AC3 9 DG  B 3 ? DG  B 13  . ? 1_555 ? 
20 AC3 9 DG  B 7 ? DG  B 17  . ? 1_556 ? 
21 AC3 9 HOH G . ? HOH B 125 . ? 1_556 ? 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 C6    A DC 1  ? ? N1    A DC 1  ? ? C2    A DC 1  ? ? 117.83 120.30 -2.47 0.40 N 
2  1 N3    A DC 1  ? ? C4    A DC 1  ? ? C5    A DC 1  ? ? 117.50 121.90 -4.40 0.40 N 
3  1 C6    A DG 3  ? ? C5    A DG 3  ? ? N7    A DG 3  ? ? 126.25 130.40 -4.15 0.60 N 
4  1 C8    A DA 4  ? ? N9    A DA 4  ? ? C4    A DA 4  ? ? 102.99 105.80 -2.81 0.40 N 
5  1 N9    A DA 4  ? ? C4    A DA 4  ? ? C5    A DA 4  ? ? 108.69 105.80 2.89  0.40 N 
6  1 "O4'" A DA 5  ? ? "C4'" A DA 5  ? ? "C3'" A DA 5  ? ? 101.33 104.50 -3.17 0.40 N 
7  1 N1    A DA 5  ? ? C6    A DA 5  ? ? N6    A DA 5  ? ? 114.21 118.60 -4.39 0.60 N 
8  1 "O5'" A DG 7  ? ? P     A DG 7  ? ? OP2   A DG 7  ? ? 99.66  105.70 -6.04 0.90 N 
9  1 "O4'" A DG 7  ? ? "C1'" A DG 7  ? ? N9    A DG 7  ? ? 111.38 108.30 3.08  0.30 N 
10 1 C6    A DG 7  ? ? N1    A DG 7  ? ? C2    A DG 7  ? ? 121.38 125.10 -3.72 0.60 N 
11 1 N1    A DG 7  ? ? C2    A DG 7  ? ? N3    A DG 7  ? ? 128.13 123.90 4.23  0.60 N 
12 1 N3    B DC 11 ? ? C4    B DC 11 ? ? C5    B DC 11 ? ? 125.56 121.90 3.66  0.40 N 
13 1 C4    B DC 11 ? ? C5    B DC 11 ? ? C6    B DC 11 ? ? 114.33 117.40 -3.07 0.50 N 
14 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P     B DC 12 ? ? 110.25 119.70 -9.45 1.20 Y 
15 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9    B DA 14 ? ? 110.79 108.30 2.49  0.30 N 
16 1 "O4'" B DA 15 ? ? "C4'" B DA 15 ? ? "C3'" B DA 15 ? ? 101.23 104.50 -3.27 0.40 N 
# 
loop_
_pdbx_validate_planes.id 
_pdbx_validate_planes.PDB_model_num 
_pdbx_validate_planes.auth_comp_id 
_pdbx_validate_planes.auth_asym_id 
_pdbx_validate_planes.auth_seq_id 
_pdbx_validate_planes.PDB_ins_code 
_pdbx_validate_planes.label_alt_id 
_pdbx_validate_planes.rmsd 
_pdbx_validate_planes.type 
1 1 DA A 5  ? ? 0.081 'SIDE CHAIN' 
2 1 DC B 11 ? ? 0.078 'SIDE CHAIN' 
3 1 DA B 14 ? ? 0.077 'SIDE CHAIN' 
# 
loop_
_pdbx_struct_special_symmetry.id 
_pdbx_struct_special_symmetry.PDB_model_num 
_pdbx_struct_special_symmetry.auth_asym_id 
_pdbx_struct_special_symmetry.auth_comp_id 
_pdbx_struct_special_symmetry.auth_seq_id 
_pdbx_struct_special_symmetry.PDB_ins_code 
_pdbx_struct_special_symmetry.label_asym_id 
_pdbx_struct_special_symmetry.label_comp_id 
_pdbx_struct_special_symmetry.label_seq_id 
1 1 A HOH 100 ? F HOH . 
2 1 A HOH 101 ? F HOH . 
3 1 A HOH 211 ? F HOH . 
4 1 B HOH 219 ? G HOH . 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O  N N 1   
DA  P      P  N N 2   
DA  OP1    O  N N 3   
DA  OP2    O  N N 4   
DA  "O5'"  O  N N 5   
DA  "C5'"  C  N N 6   
DA  "C4'"  C  N R 7   
DA  "O4'"  O  N N 8   
DA  "C3'"  C  N S 9   
DA  "O3'"  O  N N 10  
DA  "C2'"  C  N N 11  
DA  "C1'"  C  N R 12  
DA  N9     N  Y N 13  
DA  C8     C  Y N 14  
DA  N7     N  Y N 15  
DA  C5     C  Y N 16  
DA  C6     C  Y N 17  
DA  N6     N  N N 18  
DA  N1     N  Y N 19  
DA  C2     C  Y N 20  
DA  N3     N  Y N 21  
DA  C4     C  Y N 22  
DA  HOP3   H  N N 23  
DA  HOP2   H  N N 24  
DA  "H5'"  H  N N 25  
DA  "H5''" H  N N 26  
DA  "H4'"  H  N N 27  
DA  "H3'"  H  N N 28  
DA  "HO3'" H  N N 29  
DA  "H2'"  H  N N 30  
DA  "H2''" H  N N 31  
DA  "H1'"  H  N N 32  
DA  H8     H  N N 33  
DA  H61    H  N N 34  
DA  H62    H  N N 35  
DA  H2     H  N N 36  
DC  OP3    O  N N 37  
DC  P      P  N N 38  
DC  OP1    O  N N 39  
DC  OP2    O  N N 40  
DC  "O5'"  O  N N 41  
DC  "C5'"  C  N N 42  
DC  "C4'"  C  N R 43  
DC  "O4'"  O  N N 44  
DC  "C3'"  C  N S 45  
DC  "O3'"  O  N N 46  
DC  "C2'"  C  N N 47  
DC  "C1'"  C  N R 48  
DC  N1     N  N N 49  
DC  C2     C  N N 50  
DC  O2     O  N N 51  
DC  N3     N  N N 52  
DC  C4     C  N N 53  
DC  N4     N  N N 54  
DC  C5     C  N N 55  
DC  C6     C  N N 56  
DC  HOP3   H  N N 57  
DC  HOP2   H  N N 58  
DC  "H5'"  H  N N 59  
DC  "H5''" H  N N 60  
DC  "H4'"  H  N N 61  
DC  "H3'"  H  N N 62  
DC  "HO3'" H  N N 63  
DC  "H2'"  H  N N 64  
DC  "H2''" H  N N 65  
DC  "H1'"  H  N N 66  
DC  H41    H  N N 67  
DC  H42    H  N N 68  
DC  H5     H  N N 69  
DC  H6     H  N N 70  
DG  OP3    O  N N 71  
DG  P      P  N N 72  
DG  OP1    O  N N 73  
DG  OP2    O  N N 74  
DG  "O5'"  O  N N 75  
DG  "C5'"  C  N N 76  
DG  "C4'"  C  N R 77  
DG  "O4'"  O  N N 78  
DG  "C3'"  C  N S 79  
DG  "O3'"  O  N N 80  
DG  "C2'"  C  N N 81  
DG  "C1'"  C  N R 82  
DG  N9     N  Y N 83  
DG  C8     C  Y N 84  
DG  N7     N  Y N 85  
DG  C5     C  Y N 86  
DG  C6     C  N N 87  
DG  O6     O  N N 88  
DG  N1     N  N N 89  
DG  C2     C  N N 90  
DG  N2     N  N N 91  
DG  N3     N  N N 92  
DG  C4     C  Y N 93  
DG  HOP3   H  N N 94  
DG  HOP2   H  N N 95  
DG  "H5'"  H  N N 96  
DG  "H5''" H  N N 97  
DG  "H4'"  H  N N 98  
DG  "H3'"  H  N N 99  
DG  "HO3'" H  N N 100 
DG  "H2'"  H  N N 101 
DG  "H2''" H  N N 102 
DG  "H1'"  H  N N 103 
DG  H8     H  N N 104 
DG  H1     H  N N 105 
DG  H21    H  N N 106 
DG  H22    H  N N 107 
DT  OP3    O  N N 108 
DT  P      P  N N 109 
DT  OP1    O  N N 110 
DT  OP2    O  N N 111 
DT  "O5'"  O  N N 112 
DT  "C5'"  C  N N 113 
DT  "C4'"  C  N R 114 
DT  "O4'"  O  N N 115 
DT  "C3'"  C  N S 116 
DT  "O3'"  O  N N 117 
DT  "C2'"  C  N N 118 
DT  "C1'"  C  N R 119 
DT  N1     N  N N 120 
DT  C2     C  N N 121 
DT  O2     O  N N 122 
DT  N3     N  N N 123 
DT  C4     C  N N 124 
DT  O4     O  N N 125 
DT  C5     C  N N 126 
DT  C7     C  N N 127 
DT  C6     C  N N 128 
DT  HOP3   H  N N 129 
DT  HOP2   H  N N 130 
DT  "H5'"  H  N N 131 
DT  "H5''" H  N N 132 
DT  "H4'"  H  N N 133 
DT  "H3'"  H  N N 134 
DT  "HO3'" H  N N 135 
DT  "H2'"  H  N N 136 
DT  "H2''" H  N N 137 
DT  "H1'"  H  N N 138 
DT  H3     H  N N 139 
DT  H71    H  N N 140 
DT  H72    H  N N 141 
DT  H73    H  N N 142 
DT  H6     H  N N 143 
HOH O      O  N N 144 
HOH H1     H  N N 145 
HOH H2     H  N N 146 
MG  MG     MG N N 147 
NCO CO     CO N N 148 
NCO N1     N  N N 149 
NCO N2     N  N N 150 
NCO N3     N  N N 151 
NCO N4     N  N N 152 
NCO N5     N  N N 153 
NCO N6     N  N N 154 
NCO HN11   H  N N 155 
NCO HN12   H  N N 156 
NCO HN13   H  N N 157 
NCO HN21   H  N N 158 
NCO HN22   H  N N 159 
NCO HN23   H  N N 160 
NCO HN31   H  N N 161 
NCO HN32   H  N N 162 
NCO HN33   H  N N 163 
NCO HN41   H  N N 164 
NCO HN42   H  N N 165 
NCO HN43   H  N N 166 
NCO HN51   H  N N 167 
NCO HN52   H  N N 168 
NCO HN53   H  N N 169 
NCO HN61   H  N N 170 
NCO HN62   H  N N 171 
NCO HN63   H  N N 172 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
HOH O     H1     sing N N 150 
HOH O     H2     sing N N 151 
NCO CO    N1     sing N N 152 
NCO CO    N2     sing N N 153 
NCO CO    N3     sing N N 154 
NCO CO    N4     sing N N 155 
NCO CO    N5     sing N N 156 
NCO CO    N6     sing N N 157 
NCO N1    HN11   sing N N 158 
NCO N1    HN12   sing N N 159 
NCO N1    HN13   sing N N 160 
NCO N2    HN21   sing N N 161 
NCO N2    HN22   sing N N 162 
NCO N2    HN23   sing N N 163 
NCO N3    HN31   sing N N 164 
NCO N3    HN32   sing N N 165 
NCO N3    HN33   sing N N 166 
NCO N4    HN41   sing N N 167 
NCO N4    HN42   sing N N 168 
NCO N4    HN43   sing N N 169 
NCO N5    HN51   sing N N 170 
NCO N5    HN52   sing N N 171 
NCO N5    HN53   sing N N 172 
NCO N6    HN61   sing N N 173 
NCO N6    HN62   sing N N 174 
NCO N6    HN63   sing N N 175 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1D8X 'double helix'         
1D8X 'b-form double helix'  
1D8X 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 10 1_555 0.103  -0.053 0.112  0.294   -6.065 -1.714 1  A_DC1:DG20_B  A 1  ? B 20 ? 19 1 
1 A DC 2  1_555 B DG 9  1_555 0.321  -0.075 -0.122 5.782   9.555  -0.015 2  A_DC2:DG19_B  A 2  ? B 19 ? 19 1 
1 A DG 3  1_555 B DA 8  1_555 6.536  -4.340 0.568  34.320  3.911  4.702  3  A_DG3:DA18_B  A 3  ? B 18 ? 11 9 
1 A DA 4  1_555 B DG 7  1_555 -6.601 -4.171 0.961  -42.679 -9.392 4.643  4  A_DA4:DG17_B  A 4  ? B 17 ? 11 9 
1 A DA 5  1_555 B DT 6  1_555 0.129  -0.135 0.025  -14.987 14.930 2.750  5  A_DA5:DT16_B  A 5  ? B 16 ? 20 1 
1 A DT 6  1_555 B DA 5  1_555 0.049  -0.074 0.117  12.912  9.833  0.804  6  A_DT6:DA15_B  A 6  ? B 15 ? 20 1 
1 A DG 7  1_555 B DA 4  1_555 6.502  -4.223 1.044  38.614  -5.772 6.814  7  A_DG7:DA14_B  A 7  ? B 14 ? 11 9 
1 A DA 8  1_555 B DG 3  1_555 -6.516 -4.370 0.839  -31.656 -1.622 6.447  8  A_DA8:DG13_B  A 8  ? B 13 ? 11 9 
1 A DG 9  1_555 B DC 2  1_555 -0.218 -0.112 -0.271 -5.507  7.126  -0.993 9  A_DG9:DC12_B  A 9  ? B 12 ? 19 1 
1 A DG 10 1_555 B DC 1  1_555 -0.086 -0.010 0.262  4.248   -9.274 -0.577 10 A_DG10:DC11_B A 10 ? B 11 ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1 1_555 B DG 10 1_555 A DC 2  1_555 B DG 9 1_555 1.176  0.332  3.383 8.109  12.132 35.537 -1.156 -0.680  3.488 18.923 
-12.648 38.327 1 AA_DC1DC2:DG19DG20_BB  A 1 ? B 20 ? A 2  ? B 19 ? 
1 A DC 2 1_555 B DG 9  1_555 A DG 3  1_555 B DA 8 1_555 0.730  1.439  2.992 -1.551 5.025  56.661 1.252  -0.846  3.079 5.282  1.630 
56.884 2 AA_DC2DG3:DA18DG19_BB  A 2 ? B 19 ? A 3  ? B 18 ? 
1 A DG 3 1_555 B DA 8  1_555 A DA 4  1_555 B DG 7 1_555 0.075  -1.320 5.254 -1.716 -1.623 -2.586 58.923 -38.230 3.305 29.138 
-30.810 -3.502 3 AA_DG3DA4:DG17DA18_BB  A 3 ? B 18 ? A 4  ? B 17 ? 
1 A DA 4 1_555 B DG 7  1_555 A DA 5  1_555 B DT 6 1_555 -0.436 1.209  3.141 -0.373 2.358  67.096 1.005  0.380   3.179 2.133  0.338 
67.133 4 AA_DA4DA5:DT16DG17_BB  A 4 ? B 17 ? A 5  ? B 16 ? 
1 A DA 5 1_555 B DT 6  1_555 A DT 6  1_555 B DA 5 1_555 0.056  -0.544 3.001 -0.300 5.635  19.499 -3.826 -0.280  2.735 16.203 0.862 
20.292 5 AA_DA5DT6:DA15DT16_BB  A 5 ? B 16 ? A 6  ? B 15 ? 
1 A DT 6 1_555 B DA 5  1_555 A DG 7  1_555 B DA 4 1_555 0.790  0.859  3.101 1.616  6.974  61.161 0.524  -0.699  3.190 6.829  
-1.582  61.538 6 AA_DT6DG7:DA14DA15_BB  A 6 ? B 15 ? A 7  ? B 14 ? 
1 A DG 7 1_555 B DA 4  1_555 A DA 8  1_555 B DG 3 1_555 0.026  -1.716 5.114 1.229  -2.298 -3.319 57.228 18.487  3.082 33.637 
17.986  -4.219 7 AA_DG7DA8:DG13DA14_BB  A 7 ? B 14 ? A 8  ? B 13 ? 
1 A DA 8 1_555 B DG 3  1_555 A DG 9  1_555 B DC 2 1_555 -0.873 1.551  3.014 6.210  6.883  57.376 1.257  1.208   3.064 7.118  
-6.422  58.057 8 AA_DA8DG9:DC12DG13_BB  A 8 ? B 13 ? A 9  ? B 12 ? 
1 A DG 9 1_555 B DC 2  1_555 A DG 10 1_555 B DC 1 1_555 -1.262 1.499  3.346 -7.490 4.840  33.857 1.694  0.861   3.705 8.137  
12.591  34.978 9 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? 
# 
_atom_sites.entry_id                    1D8X 
_atom_sites.fract_transf_matrix[1][1]   0.015928 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.004084 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.028023 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.045951 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
CO 
MG 
N  
O  
P  
# 
loop_