HEADER LYASE 27-OCT-99 1D9E TITLE STRUCTURE OF E. COLI KDO8P SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEOXY-D-MANNO-OCTULOSONATE 8-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 4.1.2.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PT7-7 KEYWDS KDO, KDO8P, TIM BARREL, DAH7P, PEP, A5P, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RADAEV,P.DASTIDAR,M.PATEL,R.W.WOODARD,D.L.GATTI REVDAT 5 07-FEB-24 1D9E 1 REMARK SHEET REVDAT 4 11-OCT-17 1D9E 1 REMARK REVDAT 3 04-OCT-17 1D9E 1 REMARK REVDAT 2 24-FEB-09 1D9E 1 VERSN REVDAT 1 10-MAY-00 1D9E 0 JRNL AUTH S.RADAEV,P.DASTIDAR,M.PATEL,R.W.WOODARD,D.L.GATTI JRNL TITL STRUCTURE AND MECHANISM OF 3-DEOXY-D-MANNO-OCTULOSONATE JRNL TITL 2 8-PHOSPHATE SYNTHASE. JRNL REF J.BIOL.CHEM. V. 275 9476 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10734095 JRNL DOI 10.1074/JBC.275.13.9476 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 76652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 7733 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 424 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.574 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D9E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000009908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76652 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 22.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 20.60 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, POTASSIUM PHOSPHATE, REMARK 280 ETHYLENE GLYCOL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 114.31000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 114.31000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 114.31000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 114.31000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 114.31000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 114.31000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 114.31000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 114.31000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 114.31000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 114.31000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 114.31000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 114.31000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 114.31000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 114.31000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 114.31000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 114.31000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 114.31000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 114.31000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 114.31000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 114.31000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 114.31000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 114.31000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 114.31000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 114.31000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 114.31000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 114.31000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 1206 REMARK 465 ARG A 1207 REMARK 465 ASP A 1208 REMARK 465 PRO A 1209 REMARK 465 PHE A 1210 REMARK 465 GLY A 1211 REMARK 465 ALA A 1212 REMARK 465 ALA A 1213 REMARK 465 SER A 1214 REMARK 465 GLY A 1215 REMARK 465 GLY A 1216 REMARK 465 ARG A 1217 REMARK 465 HIS A 1246 REMARK 465 ALA A 1247 REMARK 465 LYS A 1248 REMARK 465 CYS A 1249 REMARK 465 ASP A 1250 REMARK 465 GLY A 1251 REMARK 465 CYS B 2206 REMARK 465 ARG B 2207 REMARK 465 ASP B 2208 REMARK 465 PRO B 2209 REMARK 465 PHE B 2210 REMARK 465 GLY B 2211 REMARK 465 ALA B 2212 REMARK 465 ALA B 2213 REMARK 465 SER B 2214 REMARK 465 GLY B 2215 REMARK 465 GLY B 2216 REMARK 465 ARG B 2217 REMARK 465 HIS B 2246 REMARK 465 ALA B 2247 REMARK 465 LYS B 2248 REMARK 465 CYS B 2249 REMARK 465 ASP B 2250 REMARK 465 GLY B 2251 REMARK 465 CYS C 3206 REMARK 465 ARG C 3207 REMARK 465 ASP C 3208 REMARK 465 PRO C 3209 REMARK 465 PHE C 3210 REMARK 465 GLY C 3211 REMARK 465 ALA C 3212 REMARK 465 ALA C 3213 REMARK 465 SER C 3214 REMARK 465 GLY C 3215 REMARK 465 GLY C 3216 REMARK 465 ARG C 3217 REMARK 465 HIS C 3246 REMARK 465 ALA C 3247 REMARK 465 LYS C 3248 REMARK 465 CYS C 3249 REMARK 465 ASP C 3250 REMARK 465 GLY C 3251 REMARK 465 CYS D 4206 REMARK 465 ARG D 4207 REMARK 465 ASP D 4208 REMARK 465 PRO D 4209 REMARK 465 PHE D 4210 REMARK 465 GLY D 4211 REMARK 465 ALA D 4212 REMARK 465 ALA D 4213 REMARK 465 SER D 4214 REMARK 465 GLY D 4215 REMARK 465 GLY D 4216 REMARK 465 ARG D 4217 REMARK 465 GLU D 4245 REMARK 465 HIS D 4246 REMARK 465 ALA D 4247 REMARK 465 LYS D 4248 REMARK 465 CYS D 4249 REMARK 465 ASP D 4250 REMARK 465 GLY D 4251 REMARK 465 PRO D 4252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 2223 O HOH B 511 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C3074 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1062 45.77 -140.06 REMARK 500 ARG A1063 -159.55 -81.55 REMARK 500 PRO A1244 6.26 -58.71 REMARK 500 LEU B2028 75.52 -69.34 REMARK 500 GLU B2029 -70.15 -57.89 REMARK 500 ALA B2056 142.67 -170.05 REMARK 500 ASN B2062 50.85 -150.64 REMARK 500 SER B2191 26.00 -142.67 REMARK 500 ASN C3062 50.11 -141.18 REMARK 500 LYS C3162 50.86 -119.41 REMARK 500 ARG C3168 29.88 -143.75 REMARK 500 ILE D4008 70.94 -115.30 REMARK 500 ASN D4026 -74.65 -64.22 REMARK 500 LEU D4028 63.98 -67.99 REMARK 500 TYR D4069 121.95 -16.33 REMARK 500 ALA D4106 -32.68 -36.98 REMARK 500 LYS D4162 51.84 -114.89 REMARK 500 LEU D4204 -72.91 -95.20 REMARK 500 ALA D4219 -26.76 -31.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 3999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 4999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2888 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 3888 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1777 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2777 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 3777 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 4777 DBREF 1D9E A 1001 1284 UNP P0A715 KDSA_ECOLI 1 284 DBREF 1D9E B 2001 2284 UNP P0A715 KDSA_ECOLI 1 284 DBREF 1D9E C 3001 3284 UNP P0A715 KDSA_ECOLI 1 284 DBREF 1D9E D 4001 4284 UNP P0A715 KDSA_ECOLI 1 284 SEQRES 1 A 284 MET LYS GLN LYS VAL VAL SER ILE GLY ASP ILE ASN VAL SEQRES 2 A 284 ALA ASN ASP LEU PRO PHE VAL LEU PHE GLY GLY MET ASN SEQRES 3 A 284 VAL LEU GLU SER ARG ASP LEU ALA MET ARG ILE CYS GLU SEQRES 4 A 284 HIS TYR VAL THR VAL THR GLN LYS LEU GLY ILE PRO TYR SEQRES 5 A 284 VAL PHE LYS ALA SER PHE ASP LYS ALA ASN ARG SER SER SEQRES 6 A 284 ILE HIS SER TYR ARG GLY PRO GLY LEU GLU GLU GLY MET SEQRES 7 A 284 LYS ILE PHE GLN GLU LEU LYS GLN THR PHE GLY VAL LYS SEQRES 8 A 284 ILE ILE THR ASP VAL HIS GLU PRO SER GLN ALA GLN PRO SEQRES 9 A 284 VAL ALA ASP VAL VAL ASP VAL ILE GLN LEU PRO ALA PHE SEQRES 10 A 284 LEU ALA ARG GLN THR ASP LEU VAL GLU ALA MET ALA LYS SEQRES 11 A 284 THR GLY ALA VAL ILE ASN VAL LYS LYS PRO GLN PHE VAL SEQRES 12 A 284 SER PRO GLY GLN MET GLY ASN ILE VAL ASP LYS PHE LYS SEQRES 13 A 284 GLU GLY GLY ASN GLU LYS VAL ILE LEU CYS ASP ARG GLY SEQRES 14 A 284 ALA ASN PHE GLY TYR ASP ASN LEU VAL VAL ASP MET LEU SEQRES 15 A 284 GLY PHE SER ILE MET LYS LYS VAL SER GLY ASN SER PRO SEQRES 16 A 284 VAL ILE PHE ASP VAL THR HIS ALA LEU GLN CYS ARG ASP SEQRES 17 A 284 PRO PHE GLY ALA ALA SER GLY GLY ARG ARG ALA GLN VAL SEQRES 18 A 284 ALA GLU LEU ALA ARG ALA GLY MET ALA VAL GLY LEU ALA SEQRES 19 A 284 GLY LEU PHE ILE GLU ALA HIS PRO ASP PRO GLU HIS ALA SEQRES 20 A 284 LYS CYS ASP GLY PRO SER ALA LEU PRO LEU ALA LYS LEU SEQRES 21 A 284 GLU PRO PHE LEU LYS GLN MET LYS ALA ILE ASP ASP LEU SEQRES 22 A 284 VAL LYS GLY PHE GLU GLU LEU ASP THR SER LYS SEQRES 1 B 284 MET LYS GLN LYS VAL VAL SER ILE GLY ASP ILE ASN VAL SEQRES 2 B 284 ALA ASN ASP LEU PRO PHE VAL LEU PHE GLY GLY MET ASN SEQRES 3 B 284 VAL LEU GLU SER ARG ASP LEU ALA MET ARG ILE CYS GLU SEQRES 4 B 284 HIS TYR VAL THR VAL THR GLN LYS LEU GLY ILE PRO TYR SEQRES 5 B 284 VAL PHE LYS ALA SER PHE ASP LYS ALA ASN ARG SER SER SEQRES 6 B 284 ILE HIS SER TYR ARG GLY PRO GLY LEU GLU GLU GLY MET SEQRES 7 B 284 LYS ILE PHE GLN GLU LEU LYS GLN THR PHE GLY VAL LYS SEQRES 8 B 284 ILE ILE THR ASP VAL HIS GLU PRO SER GLN ALA GLN PRO SEQRES 9 B 284 VAL ALA ASP VAL VAL ASP VAL ILE GLN LEU PRO ALA PHE SEQRES 10 B 284 LEU ALA ARG GLN THR ASP LEU VAL GLU ALA MET ALA LYS SEQRES 11 B 284 THR GLY ALA VAL ILE ASN VAL LYS LYS PRO GLN PHE VAL SEQRES 12 B 284 SER PRO GLY GLN MET GLY ASN ILE VAL ASP LYS PHE LYS SEQRES 13 B 284 GLU GLY GLY ASN GLU LYS VAL ILE LEU CYS ASP ARG GLY SEQRES 14 B 284 ALA ASN PHE GLY TYR ASP ASN LEU VAL VAL ASP MET LEU SEQRES 15 B 284 GLY PHE SER ILE MET LYS LYS VAL SER GLY ASN SER PRO SEQRES 16 B 284 VAL ILE PHE ASP VAL THR HIS ALA LEU GLN CYS ARG ASP SEQRES 17 B 284 PRO PHE GLY ALA ALA SER GLY GLY ARG ARG ALA GLN VAL SEQRES 18 B 284 ALA GLU LEU ALA ARG ALA GLY MET ALA VAL GLY LEU ALA SEQRES 19 B 284 GLY LEU PHE ILE GLU ALA HIS PRO ASP PRO GLU HIS ALA SEQRES 20 B 284 LYS CYS ASP GLY PRO SER ALA LEU PRO LEU ALA LYS LEU SEQRES 21 B 284 GLU PRO PHE LEU LYS GLN MET LYS ALA ILE ASP ASP LEU SEQRES 22 B 284 VAL LYS GLY PHE GLU GLU LEU ASP THR SER LYS SEQRES 1 C 284 MET LYS GLN LYS VAL VAL SER ILE GLY ASP ILE ASN VAL SEQRES 2 C 284 ALA ASN ASP LEU PRO PHE VAL LEU PHE GLY GLY MET ASN SEQRES 3 C 284 VAL LEU GLU SER ARG ASP LEU ALA MET ARG ILE CYS GLU SEQRES 4 C 284 HIS TYR VAL THR VAL THR GLN LYS LEU GLY ILE PRO TYR SEQRES 5 C 284 VAL PHE LYS ALA SER PHE ASP LYS ALA ASN ARG SER SER SEQRES 6 C 284 ILE HIS SER TYR ARG GLY PRO GLY LEU GLU GLU GLY MET SEQRES 7 C 284 LYS ILE PHE GLN GLU LEU LYS GLN THR PHE GLY VAL LYS SEQRES 8 C 284 ILE ILE THR ASP VAL HIS GLU PRO SER GLN ALA GLN PRO SEQRES 9 C 284 VAL ALA ASP VAL VAL ASP VAL ILE GLN LEU PRO ALA PHE SEQRES 10 C 284 LEU ALA ARG GLN THR ASP LEU VAL GLU ALA MET ALA LYS SEQRES 11 C 284 THR GLY ALA VAL ILE ASN VAL LYS LYS PRO GLN PHE VAL SEQRES 12 C 284 SER PRO GLY GLN MET GLY ASN ILE VAL ASP LYS PHE LYS SEQRES 13 C 284 GLU GLY GLY ASN GLU LYS VAL ILE LEU CYS ASP ARG GLY SEQRES 14 C 284 ALA ASN PHE GLY TYR ASP ASN LEU VAL VAL ASP MET LEU SEQRES 15 C 284 GLY PHE SER ILE MET LYS LYS VAL SER GLY ASN SER PRO SEQRES 16 C 284 VAL ILE PHE ASP VAL THR HIS ALA LEU GLN CYS ARG ASP SEQRES 17 C 284 PRO PHE GLY ALA ALA SER GLY GLY ARG ARG ALA GLN VAL SEQRES 18 C 284 ALA GLU LEU ALA ARG ALA GLY MET ALA VAL GLY LEU ALA SEQRES 19 C 284 GLY LEU PHE ILE GLU ALA HIS PRO ASP PRO GLU HIS ALA SEQRES 20 C 284 LYS CYS ASP GLY PRO SER ALA LEU PRO LEU ALA LYS LEU SEQRES 21 C 284 GLU PRO PHE LEU LYS GLN MET LYS ALA ILE ASP ASP LEU SEQRES 22 C 284 VAL LYS GLY PHE GLU GLU LEU ASP THR SER LYS SEQRES 1 D 284 MET LYS GLN LYS VAL VAL SER ILE GLY ASP ILE ASN VAL SEQRES 2 D 284 ALA ASN ASP LEU PRO PHE VAL LEU PHE GLY GLY MET ASN SEQRES 3 D 284 VAL LEU GLU SER ARG ASP LEU ALA MET ARG ILE CYS GLU SEQRES 4 D 284 HIS TYR VAL THR VAL THR GLN LYS LEU GLY ILE PRO TYR SEQRES 5 D 284 VAL PHE LYS ALA SER PHE ASP LYS ALA ASN ARG SER SER SEQRES 6 D 284 ILE HIS SER TYR ARG GLY PRO GLY LEU GLU GLU GLY MET SEQRES 7 D 284 LYS ILE PHE GLN GLU LEU LYS GLN THR PHE GLY VAL LYS SEQRES 8 D 284 ILE ILE THR ASP VAL HIS GLU PRO SER GLN ALA GLN PRO SEQRES 9 D 284 VAL ALA ASP VAL VAL ASP VAL ILE GLN LEU PRO ALA PHE SEQRES 10 D 284 LEU ALA ARG GLN THR ASP LEU VAL GLU ALA MET ALA LYS SEQRES 11 D 284 THR GLY ALA VAL ILE ASN VAL LYS LYS PRO GLN PHE VAL SEQRES 12 D 284 SER PRO GLY GLN MET GLY ASN ILE VAL ASP LYS PHE LYS SEQRES 13 D 284 GLU GLY GLY ASN GLU LYS VAL ILE LEU CYS ASP ARG GLY SEQRES 14 D 284 ALA ASN PHE GLY TYR ASP ASN LEU VAL VAL ASP MET LEU SEQRES 15 D 284 GLY PHE SER ILE MET LYS LYS VAL SER GLY ASN SER PRO SEQRES 16 D 284 VAL ILE PHE ASP VAL THR HIS ALA LEU GLN CYS ARG ASP SEQRES 17 D 284 PRO PHE GLY ALA ALA SER GLY GLY ARG ARG ALA GLN VAL SEQRES 18 D 284 ALA GLU LEU ALA ARG ALA GLY MET ALA VAL GLY LEU ALA SEQRES 19 D 284 GLY LEU PHE ILE GLU ALA HIS PRO ASP PRO GLU HIS ALA SEQRES 20 D 284 LYS CYS ASP GLY PRO SER ALA LEU PRO LEU ALA LYS LEU SEQRES 21 D 284 GLU PRO PHE LEU LYS GLN MET LYS ALA ILE ASP ASP LEU SEQRES 22 D 284 VAL LYS GLY PHE GLU GLU LEU ASP THR SER LYS HET SO4 A1999 5 HET SO4 A1777 5 HET SO4 B2999 5 HET SO4 B2888 5 HET SO4 B2777 5 HET SO4 C3999 5 HET SO4 C3888 5 HET SO4 C3777 5 HET SO4 D4999 5 HET SO4 D4777 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 10(O4 S 2-) FORMUL 15 HOH *424(H2 O) HELIX 1 1 SER A 1030 GLY A 1049 1 20 HELIX 2 2 PRO A 1072 GLY A 1089 1 18 HELIX 3 3 GLU A 1098 SER A 1100 5 3 HELIX 4 4 GLN A 1101 ASP A 1107 1 7 HELIX 5 5 PRO A 1115 ALA A 1119 5 5 HELIX 6 6 GLN A 1121 THR A 1131 1 11 HELIX 7 7 SER A 1144 GLY A 1146 5 3 HELIX 8 8 GLN A 1147 GLY A 1158 1 12 HELIX 9 9 LEU A 1182 SER A 1191 1 10 HELIX 10 10 VAL A 1200 LEU A 1204 1 5 HELIX 11 11 GLN A 1220 GLY A 1232 1 13 HELIX 12 12 LYS A 1259 PHE A 1277 1 19 HELIX 13 13 SER B 2030 GLY B 2049 1 20 HELIX 14 14 PRO B 2072 GLY B 2089 1 18 HELIX 15 15 GLN B 2101 VAL B 2109 1 9 HELIX 16 16 PRO B 2115 ALA B 2119 5 5 HELIX 17 17 GLN B 2121 THR B 2131 1 11 HELIX 18 18 SER B 2144 GLY B 2146 5 3 HELIX 19 19 GLN B 2147 GLY B 2158 1 12 HELIX 20 20 LEU B 2182 VAL B 2190 1 9 HELIX 21 21 VAL B 2200 LEU B 2204 1 5 HELIX 22 22 GLN B 2220 GLY B 2232 1 13 HELIX 23 23 LYS B 2259 GLY B 2276 1 18 HELIX 24 24 SER C 3030 GLY C 3049 1 20 HELIX 25 25 PRO C 3072 GLY C 3089 1 18 HELIX 26 26 GLU C 3098 SER C 3100 5 3 HELIX 27 27 GLN C 3101 ASP C 3107 1 7 HELIX 28 28 PRO C 3115 ALA C 3119 5 5 HELIX 29 29 GLN C 3121 THR C 3131 1 11 HELIX 30 30 SER C 3144 GLY C 3146 5 3 HELIX 31 31 GLN C 3147 GLY C 3158 1 12 HELIX 32 32 LEU C 3182 SER C 3191 1 10 HELIX 33 33 GLN C 3220 GLY C 3232 1 13 HELIX 34 34 LYS C 3259 PHE C 3277 1 19 HELIX 35 35 SER D 4030 GLY D 4049 1 20 HELIX 36 36 PRO D 4072 PHE D 4088 1 17 HELIX 37 37 GLU D 4098 SER D 4100 5 3 HELIX 38 38 GLN D 4101 VAL D 4109 1 9 HELIX 39 39 GLN D 4121 GLY D 4132 1 12 HELIX 40 40 SER D 4144 GLY D 4146 5 3 HELIX 41 41 GLN D 4147 GLY D 4158 1 12 HELIX 42 42 LEU D 4182 SER D 4191 1 10 HELIX 43 43 GLN D 4220 GLY D 4232 1 13 HELIX 44 44 LYS D 4259 PHE D 4277 1 19 SHEET 1 A 2 VAL A1006 ILE A1008 0 SHEET 2 A 2 ILE A1011 VAL A1013 -1 O ILE A1011 N ILE A1008 SHEET 1 B 7 VAL A1020 VAL A1027 0 SHEET 2 B 7 TYR A1052 SER A1057 1 N VAL A1053 O LEU A1021 SHEET 3 B 7 LYS A1091 ASP A1095 1 O LYS A1091 N PHE A1054 SHEET 4 B 7 VAL A1111 LEU A1114 1 N VAL A1111 O ILE A1092 SHEET 5 B 7 VAL A1134 LYS A1138 1 O VAL A1134 N ILE A1112 SHEET 6 B 7 VAL A1163 ASP A1167 1 N ILE A1164 O ILE A1135 SHEET 7 B 7 VAL A1196 ASP A1199 1 N ILE A1197 O LEU A1165 SHEET 1 C 2 ALA A1170 ASN A1171 0 SHEET 2 C 2 LEU A1177 VAL A1178 -1 O VAL A1178 N ALA A1170 SITE 1 AC1 9 HOH A 8 HOH A 23 HOH A 61 HOH A 160 SITE 2 AC1 9 HOH A 352 PRO A1115 ALA A1116 LYS A1138 SITE 3 AC1 9 ARG A1168 SITE 1 AC2 6 HOH B 91 HOH B 139 PRO B2115 ALA B2116 SITE 2 AC2 6 LYS B2138 ARG B2168 SITE 1 AC3 8 HOH C 58 HOH C 83 HOH C 85 HOH C 482 SITE 2 AC3 8 PRO C3115 ALA C3116 LYS C3138 ARG C3168 SITE 1 AC4 7 HOH D 229 HOH D 249 HOH D 255 PRO D4115 SITE 2 AC4 7 ALA D4116 LYS D4138 ARG D4168 SITE 1 AC5 4 LYS A1130 HOH B 145 SER B2030 ARG B2031 SITE 1 AC6 2 SER C3030 ARG C3031 SITE 1 AC7 3 HOH A 336 ARG A1063 SER A1064 SITE 1 AC8 2 ARG B2063 SER B2064 SITE 1 AC9 2 ARG C3063 SER C3064 SITE 1 BC1 2 ARG D4063 SER D4064 CRYST1 228.620 228.620 228.620 90.00 90.00 90.00 I 2 3 96 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004374 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004374 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004374 0.00000