HEADER GENE REGULATION 30-OCT-99 1D9X TITLE CRYSTAL STRUCTURE OF THE DNA REPAIR PROTEIN UVRB COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXCINUCLEASE UVRABC COMPONENT UVRB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CALDOTENAX; SOURCE 3 ORGANISM_TAXID: 1395; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PTYB1 KEYWDS APO PROTEIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR K.THEIS,P.J.CHEN,M.SKORVAGA,B.VAN HOUTEN,C.KISKER REVDAT 5 07-FEB-24 1D9X 1 REMARK SHEET LINK REVDAT 4 14-DEC-16 1D9X 1 REMARK VERSN REVDAT 3 24-FEB-09 1D9X 1 VERSN REVDAT 2 01-APR-03 1D9X 1 JRNL REVDAT 1 03-MAY-00 1D9X 0 JRNL AUTH K.THEIS,P.J.CHEN,M.SKORVAGA,B.VAN HOUTEN,C.KISKER JRNL TITL CRYSTAL STRUCTURE OF UVRB, A DNA HELICASE ADAPTED FOR JRNL TITL 2 NUCLEOTIDE EXCISION REPAIR. JRNL REF EMBO J. V. 18 6899 1999 JRNL REFN ISSN 0261-4189 JRNL PMID 10601012 JRNL DOI 10.1093/EMBOJ/18.24.6899 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.ZOU,B.VAN HOUTEN REMARK 1 TITL STRAND OPENING BY THE UVRA2B COMPLEX ALLOWS DYNAMIC REMARK 1 TITL 2 RECOGNITION OF DNA DAMAGE REMARK 1 REF EMBO J. V. 18 4889 1999 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/18.17.4889 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : -1000. REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.324 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.58500 REMARK 3 B22 (A**2) : -5.58500 REMARK 3 B33 (A**2) : 11.17000 REMARK 3 B12 (A**2) : -8.31000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MAXIMUM LIKELYHOOD REMARK 4 REMARK 4 1D9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000009927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-99 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MARMAD, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 MG/ML UVRB, 500 MM NACL, 14-18% PEG REMARK 280 6000, 10 MM ZNCL2, 100 MM BICINE PH 9, PH 9.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.50533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.01067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.01067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.50533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ASP A 187 REMARK 465 ARG A 222 REMARK 465 ILE A 223 REMARK 465 ARG A 224 REMARK 465 ILE A 596 REMARK 465 ARG A 597 REMARK 465 ALA A 598 REMARK 465 THR A 599 REMARK 465 TYR A 600 REMARK 465 ALA A 601 REMARK 465 ALA A 602 REMARK 465 GLU A 603 REMARK 465 GLU A 604 REMARK 465 THR A 605 REMARK 465 GLU A 606 REMARK 465 MET A 607 REMARK 465 TYR A 608 REMARK 465 GLU A 609 REMARK 465 ALA A 610 REMARK 465 LYS A 611 REMARK 465 PRO A 612 REMARK 465 ALA A 613 REMARK 465 ALA A 614 REMARK 465 ALA A 615 REMARK 465 MET A 616 REMARK 465 THR A 617 REMARK 465 LYS A 618 REMARK 465 GLN A 619 REMARK 465 GLU A 620 REMARK 465 ARG A 621 REMARK 465 GLU A 622 REMARK 465 GLU A 623 REMARK 465 LEU A 624 REMARK 465 ILE A 625 REMARK 465 ARG A 626 REMARK 465 THR A 627 REMARK 465 LEU A 628 REMARK 465 GLU A 629 REMARK 465 ALA A 630 REMARK 465 GLU A 631 REMARK 465 MET A 632 REMARK 465 LYS A 633 REMARK 465 GLU A 634 REMARK 465 ALA A 635 REMARK 465 ALA A 636 REMARK 465 LYS A 637 REMARK 465 ALA A 638 REMARK 465 LEU A 639 REMARK 465 ASP A 640 REMARK 465 PHE A 641 REMARK 465 GLU A 642 REMARK 465 ARG A 643 REMARK 465 ALA A 644 REMARK 465 ALA A 645 REMARK 465 GLN A 646 REMARK 465 LEU A 647 REMARK 465 ARG A 648 REMARK 465 ASP A 649 REMARK 465 ILE A 650 REMARK 465 ILE A 651 REMARK 465 PHE A 652 REMARK 465 GLU A 653 REMARK 465 LEU A 654 REMARK 465 LYS A 655 REMARK 465 ALA A 656 REMARK 465 GLU A 657 REMARK 465 GLY A 658 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 GLN A 180 CG CD OE1 NE2 REMARK 470 ASP A 182 CG OD1 OD2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 184 CG OD1 ND2 REMARK 470 ASP A 185 CG OD1 OD2 REMARK 470 ILE A 186 CG1 CG2 CD1 REMARK 470 PHE A 188 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 THR A 191 OG1 CG2 REMARK 470 PHE A 192 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 194 CG1 CG2 REMARK 470 ARG A 195 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 197 CG OD1 OD2 REMARK 470 VAL A 198 CG1 CG2 REMARK 470 VAL A 199 CG1 CG2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 PHE A 202 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 203 CG CD REMARK 470 SER A 205 OG REMARK 470 HIS A 209 CG ND1 CD2 CE1 NE2 REMARK 470 CYS A 210 SG REMARK 470 ILE A 211 CG1 CG2 CD1 REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 213 CG1 CG2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 PHE A 215 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE A 216 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 ILE A 220 CG1 CG2 CD1 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 30 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 PRO A 203 N - CA - CB ANGL. DEV. = 8.2 DEGREES REMARK 500 ARG A 206 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 206 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 252 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 252 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 257 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 270 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 270 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 275 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 289 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 289 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 289 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 298 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 MET A 300 CA - CB - CG ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG A 316 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 348 CD - NE - CZ ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 413 CD - NE - CZ ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 441 NH1 - CZ - NH2 ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 441 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 447 CD - NE - CZ ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG A 447 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 TYR A 474 CG - CD1 - CE1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ASP A 523 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 569 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 570 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 11 -158.60 -95.25 REMARK 500 ILE A 21 -70.39 -48.46 REMARK 500 ASN A 57 74.92 45.95 REMARK 500 VAL A 90 -167.81 -106.14 REMARK 500 ASP A 94 35.02 -89.73 REMARK 500 TYR A 95 -107.45 -166.23 REMARK 500 TYR A 96 144.63 -32.69 REMARK 500 GLU A 99 104.21 13.66 REMARK 500 PRO A 103 -74.40 -51.95 REMARK 500 ASP A 106 61.61 34.58 REMARK 500 LYS A 111 103.85 -59.31 REMARK 500 ILE A 115 106.32 -57.40 REMARK 500 ASP A 117 -42.01 -7.21 REMARK 500 CYS A 144 -15.24 -48.46 REMARK 500 GLU A 153 44.54 -73.38 REMARK 500 TYR A 154 -49.70 -153.85 REMARK 500 GLU A 168 169.95 -46.18 REMARK 500 ILE A 179 45.75 -92.60 REMARK 500 TYR A 181 125.39 5.35 REMARK 500 ARG A 189 178.31 165.34 REMARK 500 THR A 191 -75.12 64.86 REMARK 500 VAL A 194 165.57 174.56 REMARK 500 ARG A 195 -85.55 59.43 REMARK 500 ASP A 197 -138.77 87.48 REMARK 500 VAL A 199 85.59 -169.22 REMARK 500 ILE A 201 -74.65 -89.70 REMARK 500 PHE A 202 90.69 53.53 REMARK 500 ALA A 204 77.81 -66.95 REMARK 500 SER A 205 -98.02 -77.24 REMARK 500 ARG A 206 76.30 -57.85 REMARK 500 ASP A 207 76.34 -107.10 REMARK 500 GLU A 208 -39.00 -7.61 REMARK 500 HIS A 209 21.06 -64.57 REMARK 500 CYS A 210 30.48 176.33 REMARK 500 ILE A 211 13.07 -65.89 REMARK 500 ARG A 212 69.02 -103.33 REMARK 500 VAL A 213 91.87 32.34 REMARK 500 GLU A 214 -60.03 -131.67 REMARK 500 PHE A 215 108.85 46.62 REMARK 500 ILE A 220 91.60 31.76 REMARK 500 ALA A 229 -126.92 -141.52 REMARK 500 LEU A 230 -159.29 171.73 REMARK 500 LEU A 235 130.09 176.53 REMARK 500 ALA A 246 -8.50 -47.05 REMARK 500 PHE A 249 41.01 -108.86 REMARK 500 GLU A 268 -77.52 -87.85 REMARK 500 GLN A 277 -95.14 -61.14 REMARK 500 LYS A 279 32.83 -157.13 REMARK 500 GLU A 282 -55.46 98.75 REMARK 500 ALA A 283 -53.38 -178.30 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 152 -10.00 REMARK 500 ALA A 225 11.50 REMARK 500 GLU A 268 -11.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 403 NE2 REMARK 620 2 HOH A 716 O 89.7 REMARK 620 3 HOH A 727 O 131.8 75.5 REMARK 620 4 HOH A 748 O 112.4 72.4 106.3 REMARK 620 5 HOH A 785 O 117.2 148.2 73.8 108.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 702 DBREF 1D9X A 1 658 UNP P56981 UVRB_BACCA 1 657 SEQRES 1 A 658 VAL GLU GLY ARG PHE GLN LEU VAL ALA PRO TYR GLU PRO SEQRES 2 A 658 GLN GLY ASP GLN PRO GLN ALA ILE ALA LYS LEU VAL ASP SEQRES 3 A 658 GLY LEU ARG ARG GLY VAL LYS HIS GLN THR LEU LEU GLY SEQRES 4 A 658 ALA THR GLY THR GLY LYS THR PHE THR ILE SER ASN VAL SEQRES 5 A 658 ILE ALA GLN VAL ASN LYS PRO THR LEU VAL ILE ALA HIS SEQRES 6 A 658 ASN LYS THR LEU ALA GLY GLN LEU TYR SER GLU LEU LYS SEQRES 7 A 658 GLU PHE PHE PRO HIS ASN ALA VAL GLU TYR PHE VAL SER SEQRES 8 A 658 TYR TYR ASP TYR TYR GLN PRO GLU ALA TYR VAL PRO GLN SEQRES 9 A 658 THR ASP THR TYR ILE GLU LYS ASP ALA LYS ILE ASN ASP SEQRES 10 A 658 GLU ILE ASP LYS LEU ARG HIS SER ALA THR SER ALA LEU SEQRES 11 A 658 PHE GLU ARG ARG ASP VAL ILE ILE VAL ALA SER VAL SER SEQRES 12 A 658 CYS ILE TYR GLY LEU GLY SER PRO GLU GLU TYR ARG GLU SEQRES 13 A 658 LEU VAL VAL SER LEU ARG VAL GLY MET GLU ILE GLU ARG SEQRES 14 A 658 ASN ALA LEU LEU ARG ARG LEU VAL ASP ILE GLN TYR ASP SEQRES 15 A 658 ARG ASN ASP ILE ASP PHE ARG GLY THR PHE ARG VAL ARG SEQRES 16 A 658 GLY ASP VAL VAL GLU ILE PHE PRO ALA SER ARG ASP GLU SEQRES 17 A 658 HIS CYS ILE ARG VAL GLU PHE PHE GLY ASP GLU ILE GLU SEQRES 18 A 658 ARG ILE ARG ALA GLU VAL ASP ALA LEU THR GLY LYS VAL SEQRES 19 A 658 LEU GLY GLU ARG GLU HIS VAL ALA ILE PHE PRO ALA SER SEQRES 20 A 658 HIS PHE VAL THR ARG GLU GLU LYS MET ARG LEU ALA ILE SEQRES 21 A 658 GLN ASN ILE GLU GLN GLU LEU GLU GLU ARG LEU ALA GLU SEQRES 22 A 658 LEU ARG ALA GLN GLY LYS LEU LEU GLU ALA GLN ARG LEU SEQRES 23 A 658 GLU GLN ARG THR ARG TYR ASP LEU GLU MET MET ARG GLU SEQRES 24 A 658 MET GLY PHE CYS SER GLY ILE GLU ASN TYR SER ARG HIS SEQRES 25 A 658 LEU ALA LEU ARG PRO PRO GLY SER THR PRO TYR THR LEU SEQRES 26 A 658 LEU ASP TYR PHE PRO ASP ASP PHE LEU ILE ILE VAL ASP SEQRES 27 A 658 GLU SER HIS VAL THR LEU PRO GLN LEU ARG GLY MET TYR SEQRES 28 A 658 ASN GLY ASP ARG ALA ARG LYS GLN VAL LEU VAL ASP HIS SEQRES 29 A 658 GLY PHE ARG LEU PRO SER ALA LEU ASP ASN ARG PRO LEU SEQRES 30 A 658 THR PHE GLU GLU PHE GLU GLN LYS ILE ASN GLN ILE ILE SEQRES 31 A 658 TYR VAL SER ALA THR PRO GLY PRO TYR GLU LEU GLU HIS SEQRES 32 A 658 SER PRO GLY VAL VAL GLU GLN ILE ILE ARG PRO THR GLY SEQRES 33 A 658 LEU LEU ASP PRO THR ILE ASP VAL ARG PRO THR LYS GLY SEQRES 34 A 658 GLN ILE ASP ASP LEU ILE GLY GLU ILE ARG GLU ARG VAL SEQRES 35 A 658 GLU ARG ASN GLU ARG THR LEU VAL THR THR LEU THR LYS SEQRES 36 A 658 LYS MET ALA GLU ASP LEU THR ASP TYR LEU LYS GLU ALA SEQRES 37 A 658 GLY ILE LYS VAL ALA TYR LEU HIS SER GLU ILE LYS THR SEQRES 38 A 658 LEU GLU ARG ILE GLU ILE ILE ARG ASP LEU ARG LEU GLY SEQRES 39 A 658 LYS TYR ASP VAL LEU VAL GLY ILE ASN LEU LEU ARG GLU SEQRES 40 A 658 GLY LEU ASP ILE PRO GLU VAL SER LEU VAL ALA ILE LEU SEQRES 41 A 658 ASP ALA ASP LYS GLU GLY PHE LEU ARG SER GLU ARG SER SEQRES 42 A 658 LEU ILE GLN THR ILE GLY ARG ALA ALA ARG ASN ALA ASN SEQRES 43 A 658 GLY HIS VAL ILE MET TYR ALA ASP THR ILE THR LYS SER SEQRES 44 A 658 MET GLU ILE ALA ILE GLN GLU THR LYS ARG ARG ARG ALA SEQRES 45 A 658 ILE GLN GLU GLU TYR ASN ARG LYS HIS GLY ILE VAL PRO SEQRES 46 A 658 ARG THR VAL LYS LYS GLU ILE ARG ASP VAL ILE ARG ALA SEQRES 47 A 658 THR TYR ALA ALA GLU GLU THR GLU MET TYR GLU ALA LYS SEQRES 48 A 658 PRO ALA ALA ALA MET THR LYS GLN GLU ARG GLU GLU LEU SEQRES 49 A 658 ILE ARG THR LEU GLU ALA GLU MET LYS GLU ALA ALA LYS SEQRES 50 A 658 ALA LEU ASP PHE GLU ARG ALA ALA GLN LEU ARG ASP ILE SEQRES 51 A 658 ILE PHE GLU LEU LYS ALA GLU GLY HET ZN A 701 1 HET ZN A 702 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *83(H2 O) HELIX 1 1 ASP A 16 ARG A 30 1 15 HELIX 2 2 GLY A 44 ASN A 57 1 14 HELIX 3 3 ASN A 66 PHE A 81 1 16 HELIX 4 4 SER A 91 TYR A 95 5 5 HELIX 5 5 ASP A 117 LEU A 130 1 14 HELIX 6 6 VAL A 142 TYR A 146 5 5 HELIX 7 7 PRO A 151 GLU A 156 1 6 HELIX 8 8 ALA A 171 ASP A 178 1 8 HELIX 9 9 ARG A 252 GLN A 277 1 26 HELIX 10 10 LEU A 286 GLU A 299 1 14 HELIX 11 11 GLY A 305 ASN A 308 5 4 HELIX 12 12 TYR A 309 ALA A 314 1 6 HELIX 13 13 THR A 324 PHE A 329 1 6 HELIX 14 14 GLU A 339 VAL A 360 1 22 HELIX 15 15 LEU A 368 ASN A 374 5 7 HELIX 16 16 THR A 378 ILE A 386 1 9 HELIX 17 17 GLY A 397 SER A 404 1 8 HELIX 18 18 GLY A 429 ARG A 444 1 16 HELIX 19 19 LYS A 456 GLU A 467 1 12 HELIX 20 20 ARG A 484 ARG A 492 1 9 HELIX 21 21 GLY A 526 ARG A 529 5 4 HELIX 22 22 SER A 530 GLY A 539 1 10 HELIX 23 23 ARG A 540 ALA A 542 5 3 HELIX 24 24 THR A 557 HIS A 581 1 25 SHEET 1 A 7 ALA A 85 PHE A 89 0 SHEET 2 A 7 VAL A 136 ALA A 140 1 N ILE A 137 O ALA A 85 SHEET 3 A 7 THR A 60 ILE A 63 1 N THR A 60 O VAL A 136 SHEET 4 A 7 LEU A 334 ASP A 338 1 O LEU A 334 N LEU A 61 SHEET 5 A 7 ILE A 389 VAL A 392 1 N ILE A 390 O ILE A 335 SHEET 6 A 7 HIS A 34 GLY A 39 1 O GLN A 35 N TYR A 391 SHEET 7 A 7 VAL A 408 GLN A 410 1 N VAL A 408 O THR A 36 SHEET 1 B 2 TYR A 101 VAL A 102 0 SHEET 2 B 2 THR A 107 TYR A 108 -1 N THR A 107 O VAL A 102 SHEET 1 C 2 VAL A 159 ARG A 162 0 SHEET 2 C 2 HIS A 240 ILE A 243 -1 O VAL A 241 N LEU A 161 SHEET 1 D 1 GLU A 226 ASP A 228 0 SHEET 1 E 5 THR A 421 ARG A 425 0 SHEET 2 E 5 HIS A 548 TYR A 552 1 O VAL A 549 N ASP A 423 SHEET 3 E 5 VAL A 514 ILE A 519 1 O SER A 515 N HIS A 548 SHEET 4 E 5 ARG A 447 THR A 451 1 O ARG A 447 N SER A 515 SHEET 5 E 5 VAL A 498 GLY A 501 1 O LEU A 499 N VAL A 450 LINK NE2 HIS A 403 ZN ZN A 701 1555 1555 2.10 LINK NE2 HIS A 581 ZN ZN A 702 1555 1555 2.19 LINK ZN ZN A 701 O HOH A 716 1555 1555 2.38 LINK ZN ZN A 701 O HOH A 727 1555 1555 2.41 LINK ZN ZN A 701 O HOH A 748 1555 1555 2.40 LINK ZN ZN A 701 O HOH A 785 1555 1555 2.43 SITE 1 AC1 5 HIS A 403 HOH A 716 HOH A 727 HOH A 748 SITE 2 AC1 5 HOH A 785 SITE 1 AC2 3 GLU A 295 LYS A 580 HIS A 581 CRYST1 150.207 150.207 79.516 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006660 0.003840 0.000000 0.00000 SCALE2 0.000000 0.007690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012580 0.00000