HEADER CELL ADHESION 31-OCT-99 1DAB TITLE THE STRUCTURE OF BORDETELLA PERTUSSIS VIRULENCE FACTOR P.69 PERTACTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: P.69 PERTACTIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PERTUSSIS; SOURCE 3 ORGANISM_TAXID: 520; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: M13MP18 KEYWDS PERTUSSIS BETA HELIX, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR P.EMSLEY,I.G.CHARLES,N.F.FAIRWEATHER,N.W.ISAACS REVDAT 6 07-FEB-24 1DAB 1 REMARK REVDAT 5 04-OCT-17 1DAB 1 REMARK REVDAT 4 13-JUL-11 1DAB 1 VERSN REVDAT 3 24-FEB-09 1DAB 1 VERSN REVDAT 2 01-APR-03 1DAB 1 JRNL REVDAT 1 15-DEC-99 1DAB 0 JRNL AUTH P.EMSLEY,I.G.CHARLES,N.F.FAIRWEATHER,N.W.ISAACS JRNL TITL STRUCTURE OF BORDETELLA PERTUSSIS VIRULENCE FACTOR P.69 JRNL TITL 2 PERTACTIN. JRNL REF NATURE V. 381 90 1996 JRNL REFN ISSN 0028-0836 JRNL PMID 8609998 JRNL DOI 10.1038/381090A0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 822 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3847 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.070 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.030 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CGMAT MINIMIZATION REMARK 4 REMARK 4 1DAB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000009930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-95 REMARK 200 TEMPERATURE (KELVIN) : 98.0 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.877 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE TRIS.HCL, PH 8.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.34400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.34400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.34400 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.34400 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 52.34400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 52.34400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 29430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 99930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 88.09950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 152.59281 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -88.09950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 152.59281 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 88.09950 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 152.59281 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 157.03200 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 157.03200 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -88.09950 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 152.59281 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 157.03200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LEU A 230 O HOH A 776 1.84 REMARK 500 NH2 ARG A 317 O HOH A 723 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 766 O HOH A 809 2665 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 THR A 99 CA - C - N ANGL. DEV. = -16.7 DEGREES REMARK 500 TRP A 100 CB - CA - C ANGL. DEV. = 20.4 DEGREES REMARK 500 LEU A 123 CA - CB - CG ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 141 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 146 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 226 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 226 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 230 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 LEU A 230 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 LEU A 230 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ALA A 231 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 GLY A 232 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 VAL A 235 CG1 - CB - CG2 ANGL. DEV. = 10.0 DEGREES REMARK 500 VAL A 235 CA - CB - CG1 ANGL. DEV. = -22.3 DEGREES REMARK 500 VAL A 235 CA - CB - CG2 ANGL. DEV. = -12.5 DEGREES REMARK 500 VAL A 240 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 VAL A 245 CB - CA - C ANGL. DEV. = -24.7 DEGREES REMARK 500 VAL A 245 CG1 - CB - CG2 ANGL. DEV. = 22.5 DEGREES REMARK 500 VAL A 245 CA - CB - CG2 ANGL. DEV. = -9.4 DEGREES REMARK 500 VAL A 245 N - CA - C ANGL. DEV. = 37.4 DEGREES REMARK 500 VAL A 245 CA - C - O ANGL. DEV. = -26.7 DEGREES REMARK 500 VAL A 245 CA - C - N ANGL. DEV. = 22.0 DEGREES REMARK 500 PRO A 246 CA - N - CD ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO A 246 N - CA - CB ANGL. DEV. = 8.7 DEGREES REMARK 500 PRO A 246 CA - CB - CG ANGL. DEV. = -20.0 DEGREES REMARK 500 PHE A 254 N - CA - C ANGL. DEV. = 18.9 DEGREES REMARK 500 LEU A 258 CB - CA - C ANGL. DEV. = 11.6 DEGREES REMARK 500 LEU A 258 CA - CB - CG ANGL. DEV. = 26.1 DEGREES REMARK 500 GLY A 260 CA - C - O ANGL. DEV. = -12.8 DEGREES REMARK 500 GLY A 260 CA - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 317 NH1 - CZ - NH2 ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG A 317 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 317 NE - CZ - NH2 ANGL. DEV. = -23.0 DEGREES REMARK 500 LEU A 368 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 THR A 393 CB - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 ARG A 394 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 521 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 521 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL A 533 CA - C - N ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 13 64.17 23.12 REMARK 500 SER A 38 -0.38 -142.75 REMARK 500 LEU A 67 45.07 -101.08 REMARK 500 ILE A 72 134.50 -9.18 REMARK 500 ARG A 73 -175.58 73.49 REMARK 500 ARG A 74 149.24 59.69 REMARK 500 ALA A 83 139.84 -173.48 REMARK 500 TRP A 100 -107.67 -49.06 REMARK 500 ASP A 101 5.38 -39.45 REMARK 500 ASP A 146 -4.70 -147.19 REMARK 500 LEU A 154 -150.66 -135.24 REMARK 500 GLN A 155 -102.50 23.56 REMARK 500 SER A 156 81.32 9.35 REMARK 500 PRO A 159 112.18 -18.83 REMARK 500 ASP A 161 -140.55 -172.49 REMARK 500 LEU A 162 -96.31 -82.76 REMARK 500 ASP A 228 -160.64 149.74 REMARK 500 ALA A 229 146.43 137.20 REMARK 500 LEU A 230 167.25 98.28 REMARK 500 ALA A 231 116.38 140.59 REMARK 500 VAL A 235 77.53 -117.95 REMARK 500 PRO A 236 -107.06 -90.52 REMARK 500 ALA A 239 101.35 63.11 REMARK 500 VAL A 240 -111.35 -7.49 REMARK 500 ALA A 244 94.57 110.14 REMARK 500 PHE A 249 60.51 61.63 REMARK 500 PRO A 256 -78.24 -106.02 REMARK 500 VAL A 257 -13.84 154.56 REMARK 500 ALA A 315 112.03 125.68 REMARK 500 PRO A 346 1.54 -69.84 REMARK 500 THR A 366 75.80 -116.60 REMARK 500 GLU A 367 -85.32 25.75 REMARK 500 SER A 370 -44.23 72.48 REMARK 500 ILE A 371 95.78 -35.39 REMARK 500 PRO A 372 115.38 -38.12 REMARK 500 SER A 385 73.51 27.06 REMARK 500 SER A 421 65.87 35.00 REMARK 500 PHE A 455 77.65 -114.51 REMARK 500 ASP A 469 101.28 -168.81 REMARK 500 SER A 500 126.81 -12.63 REMARK 500 ALA A 502 150.45 -49.85 REMARK 500 ASN A 525 54.42 -116.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 99 10.08 REMARK 500 TRP A 100 13.64 REMARK 500 ALA A 179 10.64 REMARK 500 PRO A 241 -10.83 REMARK 500 VAL A 245 -19.95 REMARK 500 PRO A 246 18.32 REMARK 500 REMARK 500 REMARK: NULL DBREF 1DAB A 1 539 UNP P14283 PERT_BORPE 35 573 SEQRES 1 A 539 ASP TRP ASN ASN GLN SER ILE VAL LYS THR GLY GLU ARG SEQRES 2 A 539 GLN HIS GLY ILE HIS ILE GLN GLY SER ASP PRO GLY GLY SEQRES 3 A 539 VAL ARG THR ALA SER GLY THR THR ILE LYS VAL SER GLY SEQRES 4 A 539 ARG GLN ALA GLN GLY ILE LEU LEU GLU ASN PRO ALA ALA SEQRES 5 A 539 GLU LEU GLN PHE ARG ASN GLY SER VAL THR SER SER GLY SEQRES 6 A 539 GLN LEU SER ASP ASP GLY ILE ARG ARG PHE LEU GLY THR SEQRES 7 A 539 VAL THR VAL LYS ALA GLY LYS LEU VAL ALA ASP HIS ALA SEQRES 8 A 539 THR LEU ALA ASN VAL GLY ASP THR TRP ASP ASP ASP GLY SEQRES 9 A 539 ILE ALA LEU TYR VAL ALA GLY GLU GLN ALA GLN ALA SER SEQRES 10 A 539 ILE ALA ASP SER THR LEU GLN GLY ALA GLY GLY VAL GLN SEQRES 11 A 539 ILE GLU ARG GLY ALA ASN VAL THR VAL GLN ARG SER ALA SEQRES 12 A 539 ILE VAL ASP GLY GLY LEU HIS ILE GLY ALA LEU GLN SER SEQRES 13 A 539 LEU GLN PRO GLU ASP LEU PRO PRO SER ARG VAL VAL LEU SEQRES 14 A 539 ARG ASP THR ASN VAL THR ALA VAL PRO ALA SER GLY ALA SEQRES 15 A 539 PRO ALA ALA VAL SER VAL LEU GLY ALA SER GLU LEU THR SEQRES 16 A 539 LEU ASP GLY GLY HIS ILE THR GLY GLY ARG ALA ALA GLY SEQRES 17 A 539 VAL ALA ALA MET GLN GLY ALA VAL VAL HIS LEU GLN ARG SEQRES 18 A 539 ALA THR ILE ARG ARG GLY ASP ALA LEU ALA GLY GLY ALA SEQRES 19 A 539 VAL PRO GLY GLY ALA VAL PRO GLY GLY ALA VAL PRO GLY SEQRES 20 A 539 GLY PHE GLY PRO GLY GLY PHE GLY PRO VAL LEU ASP GLY SEQRES 21 A 539 TRP TYR GLY VAL ASP VAL SER GLY SER SER VAL GLU LEU SEQRES 22 A 539 ALA GLN SER ILE VAL GLU ALA PRO GLU LEU GLY ALA ALA SEQRES 23 A 539 ILE ARG VAL GLY ARG GLY ALA ARG VAL THR VAL PRO GLY SEQRES 24 A 539 GLY SER LEU SER ALA PRO HIS GLY ASN VAL ILE GLU THR SEQRES 25 A 539 GLY GLY ALA ARG ARG PHE ALA PRO GLN ALA ALA PRO LEU SEQRES 26 A 539 SER ILE THR LEU GLN ALA GLY ALA HIS ALA GLN GLY LYS SEQRES 27 A 539 ALA LEU LEU TYR ARG VAL LEU PRO GLU PRO VAL LYS LEU SEQRES 28 A 539 THR LEU THR GLY GLY ALA ASP ALA GLN GLY ASP ILE VAL SEQRES 29 A 539 ALA THR GLU LEU PRO SER ILE PRO GLY THR SER ILE GLY SEQRES 30 A 539 PRO LEU ASP VAL ALA LEU ALA SER GLN ALA ARG TRP THR SEQRES 31 A 539 GLY ALA THR ARG ALA VAL ASP SER LEU SER ILE ASP ASN SEQRES 32 A 539 ALA THR TRP VAL MET THR ASP ASN SER ASN VAL GLY ALA SEQRES 33 A 539 LEU ARG LEU ALA SER ASP GLY SER VAL ASP PHE GLN GLN SEQRES 34 A 539 PRO ALA GLU ALA GLY ARG PHE LYS VAL LEU THR VAL ASN SEQRES 35 A 539 THR LEU ALA GLY SER GLY LEU PHE ARG MET ASN VAL PHE SEQRES 36 A 539 ALA ASP LEU GLY LEU SER ASP LYS LEU VAL VAL MET GLN SEQRES 37 A 539 ASP ALA SER GLY GLN HIS ARG LEU TRP VAL ARG ASN SER SEQRES 38 A 539 GLY SER GLU PRO ALA SER ALA ASN THR LEU LEU LEU VAL SEQRES 39 A 539 GLN THR PRO LEU GLY SER ALA ALA THR PHE THR LEU ALA SEQRES 40 A 539 ASN LYS ASP GLY LYS VAL ASP ILE GLY THR TYR ARG TYR SEQRES 41 A 539 ARG LEU ALA ALA ASN GLY ASN GLY GLN TRP SER LEU VAL SEQRES 42 A 539 GLY ALA LYS ALA PRO PRO FORMUL 2 HOH *277(H2 O) HELIX 1 1 PRO A 372 ILE A 376 5 5 HELIX 2 2 ALA A 456 GLY A 459 5 4 HELIX 3 3 ASN A 508 ASP A 510 5 3 SHEET 1 A28 ALA A 535 LYS A 536 0 SHEET 2 A28 TYR A 518 ALA A 523 1 N ARG A 519 O ALA A 535 SHEET 3 A28 LYS A 512 ILE A 515 1 O VAL A 513 N TYR A 520 SHEET 4 A28 TYR A 518 ALA A 523 1 O TYR A 518 N ILE A 515 SHEET 5 A28 GLN A 529 LEU A 532 -1 N SER A 531 O ALA A 523 SHEET 6 A28 LEU A 491 GLN A 495 -1 O LEU A 491 N LEU A 532 SHEET 7 A28 LYS A 463 ALA A 470 1 O LEU A 464 N GLN A 495 SHEET 8 A28 VAL A 438 GLY A 446 1 N LEU A 439 O LYS A 463 SHEET 9 A28 SER A 412 ALA A 420 1 O SER A 412 N THR A 440 SHEET 10 A28 VAL A 396 ASP A 402 1 O VAL A 396 N GLY A 415 SHEET 11 A28 LEU A 379 ALA A 384 1 O LEU A 379 N ASP A 397 SHEET 12 A28 VAL A 349 LEU A 353 1 O VAL A 349 N ASP A 380 SHEET 13 A28 LEU A 325 GLN A 330 1 O LEU A 325 N LYS A 350 SHEET 14 A28 ARG A 294 PRO A 298 1 N VAL A 295 O SER A 326 SHEET 15 A28 SER A 270 ALA A 274 1 N VAL A 271 O ARG A 294 SHEET 16 A28 VAL A 216 ARG A 225 1 N VAL A 217 O SER A 270 SHEET 17 A28 ILE A 277 GLU A 279 1 O ILE A 277 N ILE A 224 SHEET 18 A28 SER A 301 GLY A 313 1 O SER A 301 N VAL A 278 SHEET 19 A28 HIS A 334 ARG A 343 1 O HIS A 334 N LEU A 302 SHEET 20 A28 ASP A 358 VAL A 364 1 O ASP A 358 N ALA A 335 SHEET 21 A28 ARG A 388 GLY A 391 1 O ARG A 388 N ALA A 359 SHEET 22 A28 THR A 405 MET A 408 1 O THR A 405 N TRP A 389 SHEET 23 A28 SER A 424 PHE A 427 1 O SER A 424 N TRP A 406 SHEET 24 A28 LEU A 449 PHE A 455 1 O LEU A 449 N VAL A 425 SHEET 25 A28 LEU A 460 SER A 461 -1 O LEU A 460 N PHE A 455 SHEET 26 A28 LEU A 449 PHE A 455 -1 N PHE A 455 O LEU A 460 SHEET 27 A28 GLN A 473 ASN A 480 1 O ARG A 475 N PHE A 450 SHEET 28 A28 THR A 503 LEU A 506 1 O THR A 503 N HIS A 474 SHEET 1 B20 GLY A 26 SER A 31 0 SHEET 2 B20 ILE A 45 ARG A 57 1 O ALA A 51 N GLY A 26 SHEET 3 B20 ILE A 17 ILE A 19 1 O ILE A 17 N LEU A 46 SHEET 4 B20 ILE A 45 ARG A 57 1 O LEU A 46 N ILE A 19 SHEET 5 B20 VAL A 79 ASP A 89 1 N THR A 80 O ILE A 45 SHEET 6 B20 ILE A 105 ALA A 110 1 O ALA A 106 N VAL A 79 SHEET 7 B20 GLY A 128 GLU A 132 1 O GLY A 128 N ALA A 106 SHEET 8 B20 LEU A 149 GLY A 152 1 N HIS A 150 O VAL A 129 SHEET 9 B20 ALA A 184 LEU A 189 1 O ALA A 185 N LEU A 149 SHEET 10 B20 ALA A 207 MET A 212 1 O ALA A 207 N ALA A 185 SHEET 11 B20 TRP A 261 SER A 267 1 O TYR A 262 N GLY A 208 SHEET 12 B20 GLY A 284 GLY A 290 1 O ALA A 285 N GLY A 263 SHEET 13 B20 SER A 301 GLY A 313 1 N ASN A 308 O GLY A 284 SHEET 14 B20 ILE A 277 GLU A 279 1 N VAL A 278 O SER A 301 SHEET 15 B20 VAL A 216 ARG A 225 1 O ALA A 222 N ILE A 277 SHEET 16 B20 SER A 192 GLY A 203 1 O SER A 192 N VAL A 216 SHEET 17 B20 SER A 165 ARG A 170 1 O SER A 165 N GLU A 193 SHEET 18 B20 ASN A 136 GLN A 140 1 O VAL A 137 N VAL A 168 SHEET 19 B20 ALA A 114 ALA A 119 1 O ALA A 114 N ASN A 136 SHEET 20 B20 VAL A 79 ASP A 89 1 O GLY A 84 N GLN A 115 SHEET 1 C 7 SER A 6 LYS A 9 0 SHEET 2 C 7 THR A 34 VAL A 37 1 O THR A 34 N ILE A 7 SHEET 3 C 7 SER A 60 SER A 63 1 O SER A 60 N ILE A 35 SHEET 4 C 7 THR A 92 ASN A 95 1 O THR A 92 N VAL A 61 SHEET 5 C 7 THR A 122 GLN A 124 1 O THR A 122 N LEU A 93 SHEET 6 C 7 ALA A 143 ILE A 144 1 O ALA A 143 N LEU A 123 SHEET 7 C 7 ASN A 173 ALA A 176 1 O ASN A 173 N ILE A 144 CISPEP 1 VAL A 240 PRO A 241 0 1.92 CISPEP 2 GLY A 255 PRO A 256 0 -5.28 CRYST1 176.199 176.199 104.688 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005680 0.003280 0.000000 0.00000 SCALE2 0.000000 0.006550 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009550 0.00000