HEADER TRANSLATIONAL GTPASE 15-FEB-96 1DAR TITLE ELONGATION FACTOR G IN COMPLEX WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR G; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EF-G SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8 KEYWDS RIBOSOMAL TRANSLOCASE, TRANSLATIONAL GTPASE EXPDTA X-RAY DIFFRACTION AUTHOR S.AL-KARADAGHI,A.AEVARSSON,M.GARBER,J.ZHELTONOSOVA,A.LILJAS REVDAT 4 07-FEB-24 1DAR 1 REMARK REVDAT 3 13-JUL-11 1DAR 1 VERSN REVDAT 2 24-FEB-09 1DAR 1 VERSN REVDAT 1 11-JUL-96 1DAR 0 JRNL AUTH S.AL-KARADAGHI,A.AEVARSSON,M.GARBER,J.ZHELTONOSOVA,A.LILJAS JRNL TITL THE STRUCTURE OF ELONGATION FACTOR G IN COMPLEX WITH GDP: JRNL TITL 2 CONFORMATIONAL FLEXIBILITY AND NUCLEOTIDE EXCHANGE. JRNL REF STRUCTURE V. 4 555 1996 JRNL REFN ISSN 0969-2126 JRNL PMID 8736554 JRNL DOI 10.1016/S0969-2126(96)00061-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.AEVARSSON,E.BRAZHNIKOV,M.GARBER,J.ZHELTONOSOVA, REMARK 1 AUTH 2 Y.CHIRGADZE,S.AL-KARADAGHI,L.A.SVENSSON,A.LILJAS REMARK 1 TITL THREE-DIMENSIONAL STRUCTURE OF THE RIBOSOMAL TRANSLOCASE: REMARK 1 TITL 2 ELONGATION FACTOR G FROM THERMUS THERMOPHILUS REMARK 1 REF EMBO J. V. 13 3669 1994 REMARK 1 REFN ISSN 0261-4189 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.CZWORKOWSKI,J.WANG,T.A.STEITZ,P.B.MOORE REMARK 1 TITL THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G COMPLEXED WITH REMARK 1 TITL 2 GDP, AT 2.7 A RESOLUTION REMARK 1 REF EMBO J. V. 13 3661 1994 REMARK 1 REFN ISSN 0261-4189 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 31591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4732 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.970 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.29 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.809 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.500 ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 ATOMS WITH ZERO OCCUPANCY COULD NOT BE LOCATED IN THE REMARK 3 ELECTRON DENSITY MAP. RESIDUES 39 - 66 (THE EFFECTOR LOOP) REMARK 3 COULD NOT BE LOCALIZED IN THE ELECTRON DENSITY MAP. DOMAIN REMARK 3 III (APPROXIMATELY RESIDUES 400 - 480) IS DISORDERED. REMARK 3 SOME PARTS WERE MODELED AS POLYALANINE. THESE INCLUDE REMARK 3 RESIDUES 433 - 442, 448 - 456, 466 - 476. REMARK 4 REMARK 4 1DAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : MAY-94 REMARK 200 TEMPERATURE (KELVIN) : 295 REMARK 200 PH : 3. REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALEIT) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32595 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 46.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 3. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.15000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 40 REMARK 465 LYS A 41 REMARK 465 ILE A 42 REMARK 465 GLY A 43 REMARK 465 GLU A 44 REMARK 465 VAL A 45 REMARK 465 HIS A 46 REMARK 465 GLU A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 THR A 51 REMARK 465 MET A 52 REMARK 465 ASP A 53 REMARK 465 PHE A 54 REMARK 465 MET A 55 REMARK 465 GLU A 56 REMARK 465 GLN A 57 REMARK 465 GLU A 58 REMARK 465 ARG A 59 REMARK 465 GLU A 60 REMARK 465 ARG A 61 REMARK 465 GLY A 62 REMARK 465 ILE A 63 REMARK 465 THR A 64 REMARK 465 ILE A 65 REMARK 465 THR A 66 REMARK 465 ILE A 402 REMARK 465 GLU A 403 REMARK 465 VAL A 404 REMARK 465 PRO A 405 REMARK 465 GLU A 406 REMARK 465 PRO A 407 REMARK 465 VAL A 408 REMARK 465 ILE A 409 REMARK 465 ASP A 410 REMARK 465 VAL A 411 REMARK 465 ALA A 412 REMARK 465 ILE A 413 REMARK 465 GLU A 414 REMARK 465 PRO A 415 REMARK 465 LYS A 416 REMARK 465 THR A 417 REMARK 465 LYS A 418 REMARK 465 ALA A 419 REMARK 465 ASP A 420 REMARK 465 GLN A 421 REMARK 465 GLU A 422 REMARK 465 LYS A 423 REMARK 465 LEU A 424 REMARK 465 SER A 425 REMARK 465 GLN A 426 REMARK 465 ALA A 427 REMARK 465 LEU A 428 REMARK 465 ALA A 429 REMARK 465 ARG A 430 REMARK 465 LEU A 431 REMARK 465 ALA A 432 REMARK 465 PRO A 444 REMARK 465 GLU A 445 REMARK 465 THR A 446 REMARK 465 GLY A 447 REMARK 465 HIS A 458 REMARK 465 LEU A 459 REMARK 465 GLU A 460 REMARK 465 ILE A 461 REMARK 465 ILE A 462 REMARK 465 VAL A 463 REMARK 465 ASP A 464 REMARK 465 ARG A 465 REMARK 465 GLY A 690 REMARK 465 GLN A 691 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 39 CA C O CB CG1 CG2 CD1 REMARK 470 SER A 401 CA C O CB OG REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 ASP A 435 CG OD1 OD2 REMARK 470 PRO A 436 CG CD REMARK 470 THR A 437 OG1 CG2 REMARK 470 PHE A 438 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 439 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 440 CG1 CG2 REMARK 470 SER A 441 OG REMARK 470 THR A 442 OG1 CG2 REMARK 470 HIS A 443 CA C O CB CG ND1 CD2 REMARK 470 HIS A 443 CE1 NE2 REMARK 470 GLN A 448 CG CD OE1 NE2 REMARK 470 THR A 449 OG1 CG2 REMARK 470 ILE A 450 CG1 CG2 CD1 REMARK 470 ILE A 451 CG1 CG2 CD1 REMARK 470 SER A 452 OG REMARK 470 MET A 454 CG SD CE REMARK 470 GLU A 456 CG CD OE1 OE2 REMARK 470 LEU A 457 CA C O CB CG CD1 CD2 REMARK 470 LEU A 466 CG CD1 CD2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 ARG A 468 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 469 CG CD OE1 OE2 REMARK 470 PHE A 470 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 VAL A 472 CG1 CG2 REMARK 470 ASP A 473 CG OD1 OD2 REMARK 470 ASN A 475 CG OD1 ND2 REMARK 470 VAL A 476 CG1 CG2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 MET A 1 REMARK 475 ALA A 2 REMARK 475 VAL A 3 REMARK 475 LYS A 4 REMARK 475 VAL A 5 REMARK 475 GLU A 6 REMARK 475 ASP A 89 REMARK 475 GLU A 295 REMARK 475 GLY A 296 REMARK 475 PRO A 320 REMARK 475 ASP A 435 REMARK 475 PRO A 436 REMARK 475 ASN A 475 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 7 N REMARK 480 LYS A 10 CD CE NZ REMARK 480 ARG A 38 NE CZ NH1 NH2 REMARK 480 PHE A 90 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ILE A 92 CB CG1 CG2 CD1 REMARK 480 GLU A 95 OE1 OE2 REMARK 480 ARG A 99 CD NE CZ NH1 NH2 REMARK 480 GLN A 124 CG CD OE1 NE2 REMARK 480 LYS A 127 C O CB CG CD CE NZ REMARK 480 TYR A 128 N REMARK 480 LYS A 141 CE NZ REMARK 480 GLU A 203 CG CD OE1 OE2 REMARK 480 LYS A 215 CE NZ REMARK 480 GLU A 235 OE1 OE2 REMARK 480 GLU A 240 OE1 OE2 REMARK 480 LYS A 290 NZ REMARK 480 THR A 293 N OG1 CG2 REMARK 480 PRO A 294 C O CB CG CD REMARK 480 GLU A 297 CB CG CD OE1 OE2 REMARK 480 VAL A 298 C CB CG1 CG2 REMARK 480 VAL A 299 CG1 CG2 REMARK 480 ASP A 319 OD1 OD2 REMARK 480 TYR A 321 CB CG CD1 CD2 CE1 CE2 CZ REMARK 480 TYR A 321 OH REMARK 480 ARG A 348 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 354 CZ NH1 NH2 REMARK 480 ASN A 361 OD1 ND2 REMARK 480 GLU A 367 OE1 OE2 REMARK 480 LYS A 381 CB CG CD CE NZ REMARK 480 GLU A 382 OE2 REMARK 480 GLU A 392 OE1 OE2 REMARK 480 ASP A 393 OD1 OD2 REMARK 480 ARG A 396 CZ NH1 NH2 REMARK 480 THR A 437 N REMARK 480 LYS A 478 CA CB CG CD CE NZ REMARK 480 GLN A 480 CG CD OE1 NE2 REMARK 480 LYS A 489 CD CE NZ REMARK 480 GLN A 500 CD OE1 REMARK 480 LYS A 536 CG CD CE NZ REMARK 480 LYS A 544 CG CD CE NZ REMARK 480 GLN A 551 OE1 NE2 REMARK 480 GLU A 579 OE1 OE2 REMARK 480 ARG A 607 NE CZ NH1 NH2 REMARK 480 GLU A 609 OE1 OE2 REMARK 480 GLU A 614 CG CD OE1 OE2 REMARK 480 GLU A 615 CG CD OE1 OE2 REMARK 480 TYR A 616 CE1 CZ OH REMARK 480 MET A 617 SD CE REMARK 480 ASP A 619 CG OD1 OD2 REMARK 480 ASN A 625 OD1 ND2 REMARK 480 GLN A 630 CD OE1 NE2 REMARK 480 GLU A 635 CD OE1 OE2 REMARK 480 ARG A 644 CZ NH1 NH2 REMARK 480 GLU A 651 OE1 OE2 REMARK 480 GLN A 664 CG CD OE1 NE2 REMARK 480 GLN A 682 OE1 NE2 REMARK 480 GLU A 685 CG CD OE1 OE2 REMARK 480 LYS A 686 CG CD CE NZ REMARK 480 ILE A 688 CG1 CG2 CD1 REMARK 480 LYS A 689 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 116 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO A 436 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 -74.53 59.85 REMARK 500 TYR A 7 -103.46 -101.39 REMARK 500 ASP A 8 125.72 63.50 REMARK 500 ASP A 22 -9.38 88.30 REMARK 500 ARG A 38 10.07 168.39 REMARK 500 LYS A 75 53.63 39.49 REMARK 500 VAL A 88 89.18 -66.78 REMARK 500 ASP A 89 -30.95 172.33 REMARK 500 SER A 110 -0.77 -58.63 REMARK 500 PRO A 116 -72.19 -34.14 REMARK 500 ASP A 145 112.24 -160.96 REMARK 500 GLU A 171 -130.66 50.04 REMARK 500 ASP A 172 -4.65 -53.86 REMARK 500 SER A 175 12.82 -168.31 REMARK 500 PRO A 320 -9.72 -57.92 REMARK 500 ARG A 324 106.46 -44.45 REMARK 500 LYS A 346 -5.20 -147.12 REMARK 500 ALA A 353 -70.48 -61.68 REMARK 500 ALA A 360 -71.18 -59.97 REMARK 500 HIS A 362 150.53 113.12 REMARK 500 GLU A 392 -99.75 -16.75 REMARK 500 ASP A 393 52.66 -103.90 REMARK 500 GLU A 400 -160.59 -126.75 REMARK 500 ASP A 435 160.75 79.65 REMARK 500 PRO A 436 16.12 -175.47 REMARK 500 PHE A 438 -167.21 -68.27 REMARK 500 ARG A 439 131.31 -176.85 REMARK 500 THR A 442 -54.16 -175.30 REMARK 500 THR A 449 -78.58 83.17 REMARK 500 ILE A 450 94.88 42.52 REMARK 500 LYS A 467 36.83 0.07 REMARK 500 ARG A 468 78.94 -168.80 REMARK 500 ALA A 474 -84.54 68.28 REMARK 500 ASN A 475 -62.42 -148.85 REMARK 500 ALA A 482 85.08 -60.82 REMARK 500 VAL A 493 -162.24 -105.27 REMARK 500 THR A 501 171.77 -54.58 REMARK 500 ARG A 504 -121.28 28.64 REMARK 500 GLU A 614 -13.15 -39.08 REMARK 500 MET A 617 17.46 -58.21 REMARK 500 ARG A 627 41.85 -102.30 REMARK 500 ARG A 628 22.96 42.45 REMARK 500 GLU A 635 153.39 179.67 REMARK 500 ARG A 637 72.12 -103.59 REMARK 500 MET A 652 9.06 -64.08 REMARK 500 TYR A 655 -61.00 -22.92 REMARK 500 LYS A 681 -45.76 -28.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 568 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 692 DBREF 1DAR A 1 691 UNP Q5SHN5 Q5SHN5_THET8 1 691 SEQRES 1 A 691 MET ALA VAL LYS VAL GLU TYR ASP LEU LYS ARG LEU ARG SEQRES 2 A 691 ASN ILE GLY ILE ALA ALA HIS ILE ASP ALA GLY LYS THR SEQRES 3 A 691 THR THR THR GLU ARG ILE LEU TYR TYR THR GLY ARG ILE SEQRES 4 A 691 HIS LYS ILE GLY GLU VAL HIS GLU GLY ALA ALA THR MET SEQRES 5 A 691 ASP PHE MET GLU GLN GLU ARG GLU ARG GLY ILE THR ILE SEQRES 6 A 691 THR ALA ALA VAL THR THR CYS PHE TRP LYS ASP HIS ARG SEQRES 7 A 691 ILE ASN ILE ILE ASP THR PRO GLY HIS VAL ASP PHE THR SEQRES 8 A 691 ILE GLU VAL GLU ARG SER MET ARG VAL LEU ASP GLY ALA SEQRES 9 A 691 ILE VAL VAL PHE ASP SER SER GLN GLY VAL GLU PRO GLN SEQRES 10 A 691 SER GLU THR VAL TRP ARG GLN ALA GLU LYS TYR LYS VAL SEQRES 11 A 691 PRO ARG ILE ALA PHE ALA ASN LYS MET ASP LYS THR GLY SEQRES 12 A 691 ALA ASP LEU TRP LEU VAL ILE ARG THR MET GLN GLU ARG SEQRES 13 A 691 LEU GLY ALA ARG PRO VAL VAL MET GLN LEU PRO ILE GLY SEQRES 14 A 691 ARG GLU ASP THR PHE SER GLY ILE ILE ASP VAL LEU ARG SEQRES 15 A 691 MET LYS ALA TYR THR TYR GLY ASN ASP LEU GLY THR ASP SEQRES 16 A 691 ILE ARG GLU ILE PRO ILE PRO GLU GLU TYR LEU ASP GLN SEQRES 17 A 691 ALA ARG GLU TYR HIS GLU LYS LEU VAL GLU VAL ALA ALA SEQRES 18 A 691 ASP PHE ASP GLU ASN ILE MET LEU LYS TYR LEU GLU GLY SEQRES 19 A 691 GLU GLU PRO THR GLU GLU GLU LEU VAL ALA ALA ILE ARG SEQRES 20 A 691 LYS GLY THR ILE ASP LEU LYS ILE THR PRO VAL PHE LEU SEQRES 21 A 691 GLY SER ALA LEU LYS ASN LYS GLY VAL GLN LEU LEU LEU SEQRES 22 A 691 ASP ALA VAL VAL ASP TYR LEU PRO SER PRO LEU ASP ILE SEQRES 23 A 691 PRO PRO ILE LYS GLY THR THR PRO GLU GLY GLU VAL VAL SEQRES 24 A 691 GLU ILE HIS PRO ASP PRO ASN GLY PRO LEU ALA ALA LEU SEQRES 25 A 691 ALA PHE LYS ILE MET ALA ASP PRO TYR VAL GLY ARG LEU SEQRES 26 A 691 THR PHE ILE ARG VAL TYR SER GLY THR LEU THR SER GLY SEQRES 27 A 691 SER TYR VAL TYR ASN THR THR LYS GLY ARG LYS GLU ARG SEQRES 28 A 691 VAL ALA ARG LEU LEU ARG MET HIS ALA ASN HIS ARG GLU SEQRES 29 A 691 GLU VAL GLU GLU LEU LYS ALA GLY ASP LEU GLY ALA VAL SEQRES 30 A 691 VAL GLY LEU LYS GLU THR ILE THR GLY ASP THR LEU VAL SEQRES 31 A 691 GLY GLU ASP ALA PRO ARG VAL ILE LEU GLU SER ILE GLU SEQRES 32 A 691 VAL PRO GLU PRO VAL ILE ASP VAL ALA ILE GLU PRO LYS SEQRES 33 A 691 THR LYS ALA ASP GLN GLU LYS LEU SER GLN ALA LEU ALA SEQRES 34 A 691 ARG LEU ALA GLU GLU ASP PRO THR PHE ARG VAL SER THR SEQRES 35 A 691 HIS PRO GLU THR GLY GLN THR ILE ILE SER GLY MET GLY SEQRES 36 A 691 GLU LEU HIS LEU GLU ILE ILE VAL ASP ARG LEU LYS ARG SEQRES 37 A 691 GLU PHE LYS VAL ASP ALA ASN VAL GLY LYS PRO GLN VAL SEQRES 38 A 691 ALA TYR ARG GLU THR ILE THR LYS PRO VAL ASP VAL GLU SEQRES 39 A 691 GLY LYS PHE ILE ARG GLN THR GLY GLY ARG GLY GLN TYR SEQRES 40 A 691 GLY HIS VAL LYS ILE LYS VAL GLU PRO LEU PRO ARG GLY SEQRES 41 A 691 SER GLY PHE GLU PHE VAL ASN ALA ILE VAL GLY GLY VAL SEQRES 42 A 691 ILE PRO LYS GLU TYR ILE PRO ALA VAL GLN LYS GLY ILE SEQRES 43 A 691 GLU GLU ALA MET GLN SER GLY PRO LEU ILE GLY PHE PRO SEQRES 44 A 691 VAL VAL ASP ILE LYS VAL THR LEU TYR ASP GLY SER TYR SEQRES 45 A 691 HIS GLU VAL ASP SER SER GLU MET ALA PHE LYS ILE ALA SEQRES 46 A 691 GLY SER MET ALA ILE LYS GLU ALA VAL GLN LYS GLY ASP SEQRES 47 A 691 PRO VAL ILE LEU GLU PRO ILE MET ARG VAL GLU VAL THR SEQRES 48 A 691 THR PRO GLU GLU TYR MET GLY ASP VAL ILE GLY ASP LEU SEQRES 49 A 691 ASN ALA ARG ARG GLY GLN ILE LEU GLY MET GLU PRO ARG SEQRES 50 A 691 GLY ASN ALA GLN VAL ILE ARG ALA PHE VAL PRO LEU ALA SEQRES 51 A 691 GLU MET PHE GLY TYR ALA THR ASP LEU ARG SER LYS THR SEQRES 52 A 691 GLN GLY ARG GLY SER PHE VAL MET PHE PHE ASP HIS TYR SEQRES 53 A 691 GLN GLU VAL PRO LYS GLN VAL GLN GLU LYS LEU ILE LYS SEQRES 54 A 691 GLY GLN HET GDP A 692 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 HOH *133(H2 O) HELIX 1 1 LEU A 9 ARG A 11 5 3 HELIX 2 2 LYS A 25 THR A 36 1 12 HELIX 3 3 THR A 91 VAL A 100 1 10 HELIX 4 4 PRO A 116 LYS A 127 1 12 HELIX 5 5 LEU A 146 GLU A 155 1 10 HELIX 6 6 GLU A 171 THR A 173 5 3 HELIX 7 7 GLU A 203 ASP A 222 5 20 HELIX 8 8 GLU A 225 GLU A 233 1 9 HELIX 9 9 GLU A 239 ILE A 251 1 13 HELIX 10 10 ALA A 263 LYS A 265 5 3 HELIX 11 11 VAL A 269 TYR A 279 1 11 HELIX 12 12 ILE A 539 GLN A 551 1 13 HELIX 13 13 GLU A 579 GLN A 595 1 17 HELIX 14 14 ASP A 619 ARG A 627 1 9 HELIX 15 15 TYR A 655 THR A 663 1 9 HELIX 16 16 LYS A 681 LEU A 687 1 7 SHEET 1 A 7 PRO A 161 VAL A 163 0 SHEET 2 A 7 THR A 256 LEU A 260 1 N THR A 256 O VAL A 162 SHEET 3 A 7 PRO A 131 ASN A 137 1 N ALA A 134 O PHE A 259 SHEET 4 A 7 GLY A 103 ASP A 109 1 N ALA A 104 O PRO A 131 SHEET 5 A 7 LEU A 12 ALA A 19 1 N GLY A 16 O GLY A 103 SHEET 6 A 7 HIS A 77 ILE A 82 1 N ARG A 78 O ARG A 13 SHEET 7 A 7 VAL A 69 TRP A 74 -1 N TRP A 74 O HIS A 77 SHEET 1 B 4 GLN A 165 ILE A 168 0 SHEET 2 B 4 GLY A 176 ASP A 179 -1 N ILE A 178 O LEU A 166 SHEET 3 B 4 LYS A 184 TYR A 188 -1 N TYR A 186 O ILE A 177 SHEET 4 B 4 ILE A 196 ILE A 199 -1 N ILE A 199 O ALA A 185 SHEET 1 C 2 ILE A 289 THR A 292 0 SHEET 2 C 2 VAL A 298 ILE A 301 -1 N ILE A 301 O ILE A 289 SHEET 1 D 8 ARG A 348 ARG A 351 0 SHEET 2 D 8 TYR A 340 ASN A 343 -1 N ASN A 343 O ARG A 348 SHEET 3 D 8 THR A 388 GLY A 391 -1 N VAL A 390 O TYR A 342 SHEET 4 D 8 ALA A 310 ALA A 313 -1 N ALA A 311 O LEU A 389 SHEET 5 D 8 LEU A 325 SER A 332 -1 N SER A 332 O ALA A 310 SHEET 6 D 8 LEU A 374 VAL A 378 -1 N VAL A 377 O THR A 326 SHEET 7 D 8 ARG A 354 MET A 358 -1 N LEU A 356 O ALA A 376 SHEET 8 D 8 ARG A 363 VAL A 366 -1 N VAL A 366 O LEU A 355 SHEET 1 E 2 LYS A 315 ASP A 319 0 SHEET 2 E 2 GLY A 323 PHE A 327 -1 N PHE A 327 O LYS A 315 SHEET 1 F 2 THR A 334 THR A 336 0 SHEET 2 F 2 GLU A 368 LYS A 370 -1 N LEU A 369 O LEU A 335 SHEET 1 G 2 ILE A 451 GLY A 453 0 SHEET 2 G 2 PHE A 470 VAL A 472 -1 N VAL A 472 O ILE A 451 SHEET 1 H 3 ARG A 484 THR A 486 0 SHEET 2 H 3 VAL A 600 THR A 611 -1 N LEU A 602 O ARG A 484 SHEET 3 H 3 SER A 668 GLU A 678 -1 N GLN A 677 O GLU A 603 SHEET 1 I 4 VAL A 491 ARG A 499 0 SHEET 2 I 4 GLN A 506 PRO A 516 -1 N VAL A 514 O VAL A 491 SHEET 3 I 4 ILE A 563 GLY A 570 -1 N ASP A 569 O LYS A 511 SHEET 4 I 4 PHE A 523 ASN A 527 1 N GLU A 524 O ILE A 563 SHEET 1 J 2 ILE A 605 THR A 612 0 SHEET 2 J 2 GLN A 641 PRO A 648 -1 N VAL A 647 O MET A 606 SITE 1 AC1 13 ASP A 22 ALA A 23 GLY A 24 LYS A 25 SITE 2 AC1 13 THR A 26 THR A 27 ASN A 137 LYS A 138 SITE 3 AC1 13 ASP A 140 SER A 262 ALA A 263 LEU A 264 SITE 4 AC1 13 HOH A 735 CRYST1 76.300 106.400 115.600 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013106 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008651 0.00000