data_1DB5 # _entry.id 1DB5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DB5 pdb_00001db5 10.2210/pdb1db5/pdb RCSB RCSB009941 ? ? WWPDB D_1000009941 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-11-12 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-02-29 5 'Structure model' 1 4 2024-10-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_entry_details 5 5 'Structure model' pdbx_modification_feature 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 18 5 'Structure model' '_pdbx_struct_conn_angle.value' 19 5 'Structure model' '_struct_conn.pdbx_dist_value' 20 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 21 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 22 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 26 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 27 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 29 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 32 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 33 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 34 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DB5 _pdbx_database_status.recvd_initial_deposition_date 1999-11-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DB4 'HUMAN S-PLA2 IN COMPLEX WITH INDOLE 8' unspecified PDB 1DCY 'HUMAN S-PLA2 IN COMPLEX WITH INDOLE 3' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chirgadze, N.Y.' 1 'Schevitz, R.W.' 2 'Wery, J.-P.' 3 # _citation.id primary _citation.title 'Structure-based design of the first potent and selective inhibitor of human non-pancreatic secretory phospholipase A2.' _citation.journal_abbrev Nat.Struct.Biol. _citation.journal_volume 2 _citation.page_first 458 _citation.page_last 465 _citation.year 1995 _citation.journal_id_ASTM NSBIEW _citation.country US _citation.journal_id_ISSN 1072-8368 _citation.journal_id_CSD 2024 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7664108 _citation.pdbx_database_id_DOI 10.1038/nsb0695-458 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schevitz, R.W.' 1 ? primary 'Bach, N.J.' 2 ? primary 'Carlson, D.G.' 3 ? primary 'Chirgadze, N.Y.' 4 ? primary 'Clawson, D.K.' 5 ? primary 'Dillard, R.D.' 6 ? primary 'Draheim, S.E.' 7 ? primary 'Hartley, L.W.' 8 ? primary 'Jones, N.D.' 9 ? primary 'Mihelich, E.D.' 10 ? primary 'Olkowski, J.L.' 11 ? primary 'Snyder, D.W.' 12 ? primary 'Sommers, C.' 13 ? primary 'Wery, J.-P.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN (PHOSPHOLIPASE A2)' 13945.012 1 3.1.1.4 ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn '4-(1-BENZYL-3-CARBAMOYLMETHYL-2-METHYL-1H-INDOL-5-YLOXY)-BUTYRIC ACID' 380.437 1 ? ? ? ? 4 water nat water 18.015 38 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;NLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQ DSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC ; _entity_poly.pdbx_seq_one_letter_code_can ;NLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQ DSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 '4-(1-BENZYL-3-CARBAMOYLMETHYL-2-METHYL-1H-INDOL-5-YLOXY)-BUTYRIC ACID' 6IN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LEU n 1 3 VAL n 1 4 ASN n 1 5 PHE n 1 6 HIS n 1 7 ARG n 1 8 MET n 1 9 ILE n 1 10 LYS n 1 11 LEU n 1 12 THR n 1 13 THR n 1 14 GLY n 1 15 LYS n 1 16 GLU n 1 17 ALA n 1 18 ALA n 1 19 LEU n 1 20 SER n 1 21 TYR n 1 22 GLY n 1 23 PHE n 1 24 TYR n 1 25 GLY n 1 26 CYS n 1 27 HIS n 1 28 CYS n 1 29 GLY n 1 30 VAL n 1 31 GLY n 1 32 GLY n 1 33 ARG n 1 34 GLY n 1 35 SER n 1 36 PRO n 1 37 LYS n 1 38 ASP n 1 39 ALA n 1 40 THR n 1 41 ASP n 1 42 ARG n 1 43 CYS n 1 44 CYS n 1 45 VAL n 1 46 THR n 1 47 HIS n 1 48 ASP n 1 49 CYS n 1 50 CYS n 1 51 TYR n 1 52 LYS n 1 53 ARG n 1 54 LEU n 1 55 GLU n 1 56 LYS n 1 57 ARG n 1 58 GLY n 1 59 CYS n 1 60 GLY n 1 61 THR n 1 62 LYS n 1 63 PHE n 1 64 LEU n 1 65 SER n 1 66 TYR n 1 67 LYS n 1 68 PHE n 1 69 SER n 1 70 ASN n 1 71 SER n 1 72 GLY n 1 73 SER n 1 74 ARG n 1 75 ILE n 1 76 THR n 1 77 CYS n 1 78 ALA n 1 79 LYS n 1 80 GLN n 1 81 ASP n 1 82 SER n 1 83 CYS n 1 84 ARG n 1 85 SER n 1 86 GLN n 1 87 LEU n 1 88 CYS n 1 89 GLU n 1 90 CYS n 1 91 ASP n 1 92 LYS n 1 93 ALA n 1 94 ALA n 1 95 ALA n 1 96 THR n 1 97 CYS n 1 98 PHE n 1 99 ALA n 1 100 ARG n 1 101 ASN n 1 102 LYS n 1 103 THR n 1 104 THR n 1 105 TYR n 1 106 ASN n 1 107 LYS n 1 108 LYS n 1 109 TYR n 1 110 GLN n 1 111 TYR n 1 112 TYR n 1 113 SER n 1 114 ASN n 1 115 LYS n 1 116 HIS n 1 117 CYS n 1 118 ARG n 1 119 GLY n 1 120 SER n 1 121 THR n 1 122 PRO n 1 123 ARG n 1 124 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6IN non-polymer . '4-(1-BENZYL-3-CARBAMOYLMETHYL-2-METHYL-1H-INDOL-5-YLOXY)-BUTYRIC ACID' ? 'C22 H24 N2 O4' 380.437 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 1 1 ASN ASN A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 HIS 6 6 6 HIS HIS A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ALA 18 18 18 ALA ALA A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 HIS 27 27 27 HIS HIS A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 GLU 55 55 55 GLU GLU A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 CYS 59 59 59 CYS CYS A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 PHE 68 68 68 PHE PHE A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 CYS 77 77 77 CYS CYS A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 CYS 88 88 88 CYS CYS A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 CYS 90 90 90 CYS CYS A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 CYS 97 97 97 CYS CYS A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 TYR 105 105 105 TYR TYR A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 TYR 109 109 109 TYR TYR A . n A 1 110 GLN 110 110 110 GLN GLN A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 TYR 112 112 112 TYR TYR A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 ASN 114 114 114 ASN ASN A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 HIS 116 116 116 HIS HIS A . n A 1 117 CYS 117 117 117 CYS CYS A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 GLY 119 119 119 GLY GLY A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 THR 121 121 121 THR THR A . n A 1 122 PRO 122 122 122 PRO PRO A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 CYS 124 124 124 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 198 198 CA CA A . C 2 CA 1 199 199 CA CA A . D 3 6IN 1 200 200 6IN 6IN A . E 4 HOH 1 201 201 HOH HOH A . E 4 HOH 2 202 202 HOH HOH A . E 4 HOH 3 203 203 HOH HOH A . E 4 HOH 4 204 204 HOH HOH A . E 4 HOH 5 205 205 HOH HOH A . E 4 HOH 6 206 206 HOH HOH A . E 4 HOH 7 207 207 HOH HOH A . E 4 HOH 8 208 208 HOH HOH A . E 4 HOH 9 209 209 HOH HOH A . E 4 HOH 10 210 210 HOH HOH A . E 4 HOH 11 211 211 HOH HOH A . E 4 HOH 12 212 212 HOH HOH A . E 4 HOH 13 213 213 HOH HOH A . E 4 HOH 14 214 214 HOH HOH A . E 4 HOH 15 215 215 HOH HOH A . E 4 HOH 16 217 217 HOH HOH A . E 4 HOH 17 218 218 HOH HOH A . E 4 HOH 18 219 219 HOH HOH A . E 4 HOH 19 220 220 HOH HOH A . E 4 HOH 20 221 221 HOH HOH A . E 4 HOH 21 222 222 HOH HOH A . E 4 HOH 22 223 223 HOH HOH A . E 4 HOH 23 224 224 HOH HOH A . E 4 HOH 24 225 225 HOH HOH A . E 4 HOH 25 226 226 HOH HOH A . E 4 HOH 26 227 227 HOH HOH A . E 4 HOH 27 228 228 HOH HOH A . E 4 HOH 28 230 230 HOH HOH A . E 4 HOH 29 231 231 HOH HOH A . E 4 HOH 30 232 232 HOH HOH A . E 4 HOH 31 233 233 HOH HOH A . E 4 HOH 32 235 235 HOH HOH A . E 4 HOH 33 236 236 HOH HOH A . E 4 HOH 34 237 237 HOH HOH A . E 4 HOH 35 238 238 HOH HOH A . E 4 HOH 36 239 239 HOH HOH A . E 4 HOH 37 240 240 HOH HOH A . E 4 HOH 38 342 342 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 X-PLOR 'model building' . ? 3 X-PLOR refinement 98.0 ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1DB5 _cell.length_a 76.360 _cell.length_b 76.360 _cell.length_c 91.530 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1DB5 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1DB5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.8 _exptl_crystal.density_percent_sol 56 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '10 mg/ml of protein; 50 mM buffer (MES or MOPS), 1% pyridine., pH 7.0, VAPOR DIFFUSION, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1994-11-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DB5 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.800 _reflns.number_obs 4159 _reflns.number_all ? _reflns.percent_possible_obs 97.8 _reflns.pdbx_Rmerge_I_obs 0.079 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.2000 _reflns.B_iso_Wilson_estimate 23.60 _reflns.pdbx_redundancy 2.500 _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.274 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 2.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.entry_id 1DB5 _refine.ls_number_reflns_obs 3933 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF 0.001 _refine.pdbx_data_cutoff_low_absF 1000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 87.9 _refine.ls_R_factor_obs 0.196 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.196 _refine.ls_R_factor_R_free 0.24 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.4 _refine.ls_number_reflns_R_free 209 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 966 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 38 _refine_hist.number_atoms_total 1034 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.33 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 24.20 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.736 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 8 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.93 _refine_ls_shell.number_reflns_R_work 436 _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.percent_reflns_obs 94.7 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.4 _refine_ls_shell.number_reflns_R_free 24 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1DB5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DB5 _struct.title 'HUMAN S-PLA2 IN COMPLEX WITH INDOLE 6' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DB5 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'S-PLA2; STRUCTURE-BASED DRUG DESIGN, HYDROLASE/HYDROLASE INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PA2GA_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P14555 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DB5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 124 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P14555 _struct_ref_seq.db_align_beg 21 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 144 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 1 ? GLY A 14 ? ASN A 1 GLY A 14 1 ? 14 HELX_P HELX_P2 2 GLU A 16 ? GLY A 22 ? GLU A 16 GLY A 22 1 ? 7 HELX_P HELX_P3 3 ASP A 38 ? ARG A 57 ? ASP A 38 ARG A 57 1 ? 20 HELX_P HELX_P4 4 ASP A 81 ? ASN A 101 ? ASP A 81 ASN A 101 1 ? 21 HELX_P HELX_P5 5 LYS A 102 ? TYR A 105 ? LYS A 102 TYR A 105 5 ? 4 HELX_P HELX_P6 6 ASN A 106 ? GLN A 110 ? ASN A 106 GLN A 110 5 ? 5 HELX_P HELX_P7 7 SER A 113 ? CYS A 117 ? SER A 113 CYS A 117 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 117 SG ? ? A CYS 26 A CYS 117 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 44 SG ? ? A CYS 28 A CYS 44 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf3 disulf ? ? A CYS 43 SG ? ? ? 1_555 A CYS 97 SG ? ? A CYS 43 A CYS 97 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf4 disulf ? ? A CYS 49 SG ? ? ? 1_555 A CYS 124 SG ? ? A CYS 49 A CYS 124 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf5 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 90 SG ? ? A CYS 50 A CYS 90 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf6 disulf ? ? A CYS 59 SG ? ? ? 1_555 A CYS 83 SG ? ? A CYS 59 A CYS 83 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf7 disulf ? ? A CYS 77 SG ? ? ? 1_555 A CYS 88 SG ? ? A CYS 77 A CYS 88 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc1 metalc ? ? A PHE 23 O ? ? ? 1_555 C CA . CA ? ? A PHE 23 A CA 199 1_555 ? ? ? ? ? ? ? 2.648 ? ? metalc2 metalc ? ? A GLY 25 O ? ? ? 1_555 C CA . CA ? ? A GLY 25 A CA 199 1_555 ? ? ? ? ? ? ? 2.912 ? ? metalc3 metalc ? ? A HIS 27 O ? ? ? 1_555 B CA . CA ? ? A HIS 27 A CA 198 1_555 ? ? ? ? ? ? ? 2.394 ? ? metalc4 metalc ? ? A GLY 29 O ? ? ? 1_555 B CA . CA ? ? A GLY 29 A CA 198 1_555 ? ? ? ? ? ? ? 2.437 ? ? metalc5 metalc ? ? A GLY 31 O ? ? ? 1_555 B CA . CA ? ? A GLY 31 A CA 198 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc6 metalc ? ? A ASP 48 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 48 A CA 198 1_555 ? ? ? ? ? ? ? 2.530 ? ? metalc7 metalc ? ? A ASP 48 OD2 ? ? ? 1_555 B CA . CA ? ? A ASP 48 A CA 198 1_555 ? ? ? ? ? ? ? 2.752 ? ? metalc8 metalc ? ? A TYR 112 O ? ? ? 1_555 C CA . CA ? ? A TYR 112 A CA 199 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc9 metalc ? ? A ASN 114 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 114 A CA 199 1_555 ? ? ? ? ? ? ? 2.640 ? ? metalc10 metalc ? ? B CA . CA ? ? ? 1_555 D 6IN . O40 ? ? A CA 198 A 6IN 200 1_555 ? ? ? ? ? ? ? 2.559 ? ? metalc11 metalc ? ? B CA . CA ? ? ? 1_555 D 6IN . O54 ? ? A CA 198 A 6IN 200 1_555 ? ? ? ? ? ? ? 2.555 ? ? metalc12 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 199 A HOH 237 12_556 ? ? ? ? ? ? ? 2.773 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A PHE 23 ? A PHE 23 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 O ? A GLY 25 ? A GLY 25 ? 1_555 89.9 ? 2 O ? A PHE 23 ? A PHE 23 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 O ? A TYR 112 ? A TYR 112 ? 1_555 83.0 ? 3 O ? A GLY 25 ? A GLY 25 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 O ? A TYR 112 ? A TYR 112 ? 1_555 86.2 ? 4 O ? A PHE 23 ? A PHE 23 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 OD1 ? A ASN 114 ? A ASN 114 ? 1_555 170.1 ? 5 O ? A GLY 25 ? A GLY 25 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 OD1 ? A ASN 114 ? A ASN 114 ? 1_555 81.5 ? 6 O ? A TYR 112 ? A TYR 112 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 OD1 ? A ASN 114 ? A ASN 114 ? 1_555 91.4 ? 7 O ? A PHE 23 ? A PHE 23 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 O ? E HOH . ? A HOH 237 ? 12_556 97.1 ? 8 O ? A GLY 25 ? A GLY 25 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 O ? E HOH . ? A HOH 237 ? 12_556 69.5 ? 9 O ? A TYR 112 ? A TYR 112 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 O ? E HOH . ? A HOH 237 ? 12_556 155.7 ? 10 OD1 ? A ASN 114 ? A ASN 114 ? 1_555 CA ? C CA . ? A CA 199 ? 1_555 O ? E HOH . ? A HOH 237 ? 12_556 84.6 ? 11 O ? A HIS 27 ? A HIS 27 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O ? A GLY 29 ? A GLY 29 ? 1_555 94.1 ? 12 O ? A HIS 27 ? A HIS 27 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O ? A GLY 31 ? A GLY 31 ? 1_555 91.5 ? 13 O ? A GLY 29 ? A GLY 29 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O ? A GLY 31 ? A GLY 31 ? 1_555 90.4 ? 14 O ? A HIS 27 ? A HIS 27 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 OD1 ? A ASP 48 ? A ASP 48 ? 1_555 97.2 ? 15 O ? A GLY 29 ? A GLY 29 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 OD1 ? A ASP 48 ? A ASP 48 ? 1_555 168.7 ? 16 O ? A GLY 31 ? A GLY 31 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 OD1 ? A ASP 48 ? A ASP 48 ? 1_555 89.1 ? 17 O ? A HIS 27 ? A HIS 27 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 OD2 ? A ASP 48 ? A ASP 48 ? 1_555 114.4 ? 18 O ? A GLY 29 ? A GLY 29 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 OD2 ? A ASP 48 ? A ASP 48 ? 1_555 125.5 ? 19 O ? A GLY 31 ? A GLY 31 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 OD2 ? A ASP 48 ? A ASP 48 ? 1_555 131.2 ? 20 OD1 ? A ASP 48 ? A ASP 48 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 OD2 ? A ASP 48 ? A ASP 48 ? 1_555 48.9 ? 21 O ? A HIS 27 ? A HIS 27 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O40 ? D 6IN . ? A 6IN 200 ? 1_555 74.9 ? 22 O ? A GLY 29 ? A GLY 29 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O40 ? D 6IN . ? A 6IN 200 ? 1_555 70.3 ? 23 O ? A GLY 31 ? A GLY 31 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O40 ? D 6IN . ? A 6IN 200 ? 1_555 155.1 ? 24 OD1 ? A ASP 48 ? A ASP 48 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O40 ? D 6IN . ? A 6IN 200 ? 1_555 112.9 ? 25 OD2 ? A ASP 48 ? A ASP 48 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O40 ? D 6IN . ? A 6IN 200 ? 1_555 73.8 ? 26 O ? A HIS 27 ? A HIS 27 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O54 ? D 6IN . ? A 6IN 200 ? 1_555 168.8 ? 27 O ? A GLY 29 ? A GLY 29 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O54 ? D 6IN . ? A 6IN 200 ? 1_555 83.4 ? 28 O ? A GLY 31 ? A GLY 31 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O54 ? D 6IN . ? A 6IN 200 ? 1_555 77.7 ? 29 OD1 ? A ASP 48 ? A ASP 48 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O54 ? D 6IN . ? A 6IN 200 ? 1_555 85.4 ? 30 OD2 ? A ASP 48 ? A ASP 48 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O54 ? D 6IN . ? A 6IN 200 ? 1_555 75.5 ? 31 O40 ? D 6IN . ? A 6IN 200 ? 1_555 CA ? B CA . ? A CA 198 ? 1_555 O54 ? D 6IN . ? A 6IN 200 ? 1_555 114.2 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 26 ? CYS A 117 ? CYS A 26 ? 1_555 CYS A 117 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 28 ? CYS A 44 ? CYS A 28 ? 1_555 CYS A 44 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 43 ? CYS A 97 ? CYS A 43 ? 1_555 CYS A 97 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 49 ? CYS A 124 ? CYS A 49 ? 1_555 CYS A 124 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 50 ? CYS A 90 ? CYS A 50 ? 1_555 CYS A 90 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 59 ? CYS A 83 ? CYS A 59 ? 1_555 CYS A 83 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS A 77 ? CYS A 88 ? CYS A 77 ? 1_555 CYS A 88 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 68 ? SER A 71 ? PHE A 68 SER A 71 A 2 ARG A 74 ? CYS A 77 ? ARG A 74 CYS A 77 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id SER _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 71 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id SER _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 71 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ARG _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 74 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ARG _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 74 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 198 ? 5 'BINDING SITE FOR RESIDUE CA A 198' AC2 Software A CA 199 ? 5 'BINDING SITE FOR RESIDUE CA A 199' AC3 Software A 6IN 200 ? 17 'BINDING SITE FOR RESIDUE 6IN A 200' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 27 ? HIS A 27 . ? 1_555 ? 2 AC1 5 GLY A 29 ? GLY A 29 . ? 1_555 ? 3 AC1 5 GLY A 31 ? GLY A 31 . ? 1_555 ? 4 AC1 5 ASP A 48 ? ASP A 48 . ? 1_555 ? 5 AC1 5 6IN D . ? 6IN A 200 . ? 1_555 ? 6 AC2 5 PHE A 23 ? PHE A 23 . ? 1_555 ? 7 AC2 5 GLY A 25 ? GLY A 25 . ? 1_555 ? 8 AC2 5 TYR A 112 ? TYR A 112 . ? 1_555 ? 9 AC2 5 ASN A 114 ? ASN A 114 . ? 1_555 ? 10 AC2 5 HOH E . ? HOH A 237 . ? 12_556 ? 11 AC3 17 LEU A 2 ? LEU A 2 . ? 1_555 ? 12 AC3 17 HIS A 6 ? HIS A 6 . ? 1_555 ? 13 AC3 17 LEU A 19 ? LEU A 19 . ? 12_556 ? 14 AC3 17 TYR A 21 ? TYR A 21 . ? 1_555 ? 15 AC3 17 HIS A 27 ? HIS A 27 . ? 1_555 ? 16 AC3 17 CYS A 28 ? CYS A 28 . ? 1_555 ? 17 AC3 17 GLY A 29 ? GLY A 29 . ? 1_555 ? 18 AC3 17 VAL A 30 ? VAL A 30 . ? 1_555 ? 19 AC3 17 GLY A 31 ? GLY A 31 . ? 1_555 ? 20 AC3 17 CYS A 44 ? CYS A 44 . ? 1_555 ? 21 AC3 17 HIS A 47 ? HIS A 47 . ? 1_555 ? 22 AC3 17 ASP A 48 ? ASP A 48 . ? 1_555 ? 23 AC3 17 TYR A 51 ? TYR A 51 . ? 1_555 ? 24 AC3 17 LYS A 52 ? LYS A 52 . ? 1_555 ? 25 AC3 17 LYS A 62 ? LYS A 62 . ? 1_555 ? 26 AC3 17 CA B . ? CA A 198 . ? 1_555 ? 27 AC3 17 HOH E . ? HOH A 236 . ? 1_555 ? # _pdbx_entry_details.entry_id 1DB5 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 61 ? ? -133.79 -72.06 2 1 ASP A 81 ? ? -40.66 154.70 3 1 TYR A 111 ? ? -118.13 52.72 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6IN C1 C Y N 1 6IN C2 C Y N 2 6IN C3 C Y N 3 6IN C4 C Y N 4 6IN C5 C Y N 5 6IN C6 C Y N 6 6IN N10 N Y N 7 6IN C7 C Y N 8 6IN C12 C Y N 9 6IN C13 C N N 10 6IN C14 C Y N 11 6IN C17 C Y N 12 6IN C18 C Y N 13 6IN C19 C Y N 14 6IN C20 C Y N 15 6IN C21 C Y N 16 6IN C27 C N N 17 6IN C32 C N N 18 6IN C34 C N N 19 6IN N37 N N N 20 6IN O40 O N N 21 6IN O41 O N N 22 6IN C42 C N N 23 6IN C43 C N N 24 6IN C46 C N N 25 6IN C49 C N N 26 6IN O52 O N N 27 6IN O54 O N N 28 6IN H2 H N N 29 6IN H3 H N N 30 6IN H6 H N N 31 6IN H131 H N N 32 6IN H132 H N N 33 6IN H17 H N N 34 6IN H18 H N N 35 6IN H19 H N N 36 6IN H20 H N N 37 6IN H21 H N N 38 6IN H271 H N N 39 6IN H272 H N N 40 6IN H273 H N N 41 6IN H321 H N N 42 6IN H322 H N N 43 6IN H371 H N N 44 6IN H372 H N N 45 6IN H421 H N N 46 6IN H422 H N N 47 6IN H431 H N N 48 6IN H432 H N N 49 6IN H461 H N N 50 6IN H462 H N N 51 6IN HXT H N N 52 ALA N N N N 53 ALA CA C N S 54 ALA C C N N 55 ALA O O N N 56 ALA CB C N N 57 ALA OXT O N N 58 ALA H H N N 59 ALA H2 H N N 60 ALA HA H N N 61 ALA HB1 H N N 62 ALA HB2 H N N 63 ALA HB3 H N N 64 ALA HXT H N N 65 ARG N N N N 66 ARG CA C N S 67 ARG C C N N 68 ARG O O N N 69 ARG CB C N N 70 ARG CG C N N 71 ARG CD C N N 72 ARG NE N N N 73 ARG CZ C N N 74 ARG NH1 N N N 75 ARG NH2 N N N 76 ARG OXT O N N 77 ARG H H N N 78 ARG H2 H N N 79 ARG HA H N N 80 ARG HB2 H N N 81 ARG HB3 H N N 82 ARG HG2 H N N 83 ARG HG3 H N N 84 ARG HD2 H N N 85 ARG HD3 H N N 86 ARG HE H N N 87 ARG HH11 H N N 88 ARG HH12 H N N 89 ARG HH21 H N N 90 ARG HH22 H N N 91 ARG HXT H N N 92 ASN N N N N 93 ASN CA C N S 94 ASN C C N N 95 ASN O O N N 96 ASN CB C N N 97 ASN CG C N N 98 ASN OD1 O N N 99 ASN ND2 N N N 100 ASN OXT O N N 101 ASN H H N N 102 ASN H2 H N N 103 ASN HA H N N 104 ASN HB2 H N N 105 ASN HB3 H N N 106 ASN HD21 H N N 107 ASN HD22 H N N 108 ASN HXT H N N 109 ASP N N N N 110 ASP CA C N S 111 ASP C C N N 112 ASP O O N N 113 ASP CB C N N 114 ASP CG C N N 115 ASP OD1 O N N 116 ASP OD2 O N N 117 ASP OXT O N N 118 ASP H H N N 119 ASP H2 H N N 120 ASP HA H N N 121 ASP HB2 H N N 122 ASP HB3 H N N 123 ASP HD2 H N N 124 ASP HXT H N N 125 CA CA CA N N 126 CYS N N N N 127 CYS CA C N R 128 CYS C C N N 129 CYS O O N N 130 CYS CB C N N 131 CYS SG S N N 132 CYS OXT O N N 133 CYS H H N N 134 CYS H2 H N N 135 CYS HA H N N 136 CYS HB2 H N N 137 CYS HB3 H N N 138 CYS HG H N N 139 CYS HXT H N N 140 GLN N N N N 141 GLN CA C N S 142 GLN C C N N 143 GLN O O N N 144 GLN CB C N N 145 GLN CG C N N 146 GLN CD C N N 147 GLN OE1 O N N 148 GLN NE2 N N N 149 GLN OXT O N N 150 GLN H H N N 151 GLN H2 H N N 152 GLN HA H N N 153 GLN HB2 H N N 154 GLN HB3 H N N 155 GLN HG2 H N N 156 GLN HG3 H N N 157 GLN HE21 H N N 158 GLN HE22 H N N 159 GLN HXT H N N 160 GLU N N N N 161 GLU CA C N S 162 GLU C C N N 163 GLU O O N N 164 GLU CB C N N 165 GLU CG C N N 166 GLU CD C N N 167 GLU OE1 O N N 168 GLU OE2 O N N 169 GLU OXT O N N 170 GLU H H N N 171 GLU H2 H N N 172 GLU HA H N N 173 GLU HB2 H N N 174 GLU HB3 H N N 175 GLU HG2 H N N 176 GLU HG3 H N N 177 GLU HE2 H N N 178 GLU HXT H N N 179 GLY N N N N 180 GLY CA C N N 181 GLY C C N N 182 GLY O O N N 183 GLY OXT O N N 184 GLY H H N N 185 GLY H2 H N N 186 GLY HA2 H N N 187 GLY HA3 H N N 188 GLY HXT H N N 189 HIS N N N N 190 HIS CA C N S 191 HIS C C N N 192 HIS O O N N 193 HIS CB C N N 194 HIS CG C Y N 195 HIS ND1 N Y N 196 HIS CD2 C Y N 197 HIS CE1 C Y N 198 HIS NE2 N Y N 199 HIS OXT O N N 200 HIS H H N N 201 HIS H2 H N N 202 HIS HA H N N 203 HIS HB2 H N N 204 HIS HB3 H N N 205 HIS HD1 H N N 206 HIS HD2 H N N 207 HIS HE1 H N N 208 HIS HE2 H N N 209 HIS HXT H N N 210 HOH O O N N 211 HOH H1 H N N 212 HOH H2 H N N 213 ILE N N N N 214 ILE CA C N S 215 ILE C C N N 216 ILE O O N N 217 ILE CB C N S 218 ILE CG1 C N N 219 ILE CG2 C N N 220 ILE CD1 C N N 221 ILE OXT O N N 222 ILE H H N N 223 ILE H2 H N N 224 ILE HA H N N 225 ILE HB H N N 226 ILE HG12 H N N 227 ILE HG13 H N N 228 ILE HG21 H N N 229 ILE HG22 H N N 230 ILE HG23 H N N 231 ILE HD11 H N N 232 ILE HD12 H N N 233 ILE HD13 H N N 234 ILE HXT H N N 235 LEU N N N N 236 LEU CA C N S 237 LEU C C N N 238 LEU O O N N 239 LEU CB C N N 240 LEU CG C N N 241 LEU CD1 C N N 242 LEU CD2 C N N 243 LEU OXT O N N 244 LEU H H N N 245 LEU H2 H N N 246 LEU HA H N N 247 LEU HB2 H N N 248 LEU HB3 H N N 249 LEU HG H N N 250 LEU HD11 H N N 251 LEU HD12 H N N 252 LEU HD13 H N N 253 LEU HD21 H N N 254 LEU HD22 H N N 255 LEU HD23 H N N 256 LEU HXT H N N 257 LYS N N N N 258 LYS CA C N S 259 LYS C C N N 260 LYS O O N N 261 LYS CB C N N 262 LYS CG C N N 263 LYS CD C N N 264 LYS CE C N N 265 LYS NZ N N N 266 LYS OXT O N N 267 LYS H H N N 268 LYS H2 H N N 269 LYS HA H N N 270 LYS HB2 H N N 271 LYS HB3 H N N 272 LYS HG2 H N N 273 LYS HG3 H N N 274 LYS HD2 H N N 275 LYS HD3 H N N 276 LYS HE2 H N N 277 LYS HE3 H N N 278 LYS HZ1 H N N 279 LYS HZ2 H N N 280 LYS HZ3 H N N 281 LYS HXT H N N 282 MET N N N N 283 MET CA C N S 284 MET C C N N 285 MET O O N N 286 MET CB C N N 287 MET CG C N N 288 MET SD S N N 289 MET CE C N N 290 MET OXT O N N 291 MET H H N N 292 MET H2 H N N 293 MET HA H N N 294 MET HB2 H N N 295 MET HB3 H N N 296 MET HG2 H N N 297 MET HG3 H N N 298 MET HE1 H N N 299 MET HE2 H N N 300 MET HE3 H N N 301 MET HXT H N N 302 PHE N N N N 303 PHE CA C N S 304 PHE C C N N 305 PHE O O N N 306 PHE CB C N N 307 PHE CG C Y N 308 PHE CD1 C Y N 309 PHE CD2 C Y N 310 PHE CE1 C Y N 311 PHE CE2 C Y N 312 PHE CZ C Y N 313 PHE OXT O N N 314 PHE H H N N 315 PHE H2 H N N 316 PHE HA H N N 317 PHE HB2 H N N 318 PHE HB3 H N N 319 PHE HD1 H N N 320 PHE HD2 H N N 321 PHE HE1 H N N 322 PHE HE2 H N N 323 PHE HZ H N N 324 PHE HXT H N N 325 PRO N N N N 326 PRO CA C N S 327 PRO C C N N 328 PRO O O N N 329 PRO CB C N N 330 PRO CG C N N 331 PRO CD C N N 332 PRO OXT O N N 333 PRO H H N N 334 PRO HA H N N 335 PRO HB2 H N N 336 PRO HB3 H N N 337 PRO HG2 H N N 338 PRO HG3 H N N 339 PRO HD2 H N N 340 PRO HD3 H N N 341 PRO HXT H N N 342 SER N N N N 343 SER CA C N S 344 SER C C N N 345 SER O O N N 346 SER CB C N N 347 SER OG O N N 348 SER OXT O N N 349 SER H H N N 350 SER H2 H N N 351 SER HA H N N 352 SER HB2 H N N 353 SER HB3 H N N 354 SER HG H N N 355 SER HXT H N N 356 THR N N N N 357 THR CA C N S 358 THR C C N N 359 THR O O N N 360 THR CB C N R 361 THR OG1 O N N 362 THR CG2 C N N 363 THR OXT O N N 364 THR H H N N 365 THR H2 H N N 366 THR HA H N N 367 THR HB H N N 368 THR HG1 H N N 369 THR HG21 H N N 370 THR HG22 H N N 371 THR HG23 H N N 372 THR HXT H N N 373 TYR N N N N 374 TYR CA C N S 375 TYR C C N N 376 TYR O O N N 377 TYR CB C N N 378 TYR CG C Y N 379 TYR CD1 C Y N 380 TYR CD2 C Y N 381 TYR CE1 C Y N 382 TYR CE2 C Y N 383 TYR CZ C Y N 384 TYR OH O N N 385 TYR OXT O N N 386 TYR H H N N 387 TYR H2 H N N 388 TYR HA H N N 389 TYR HB2 H N N 390 TYR HB3 H N N 391 TYR HD1 H N N 392 TYR HD2 H N N 393 TYR HE1 H N N 394 TYR HE2 H N N 395 TYR HH H N N 396 TYR HXT H N N 397 VAL N N N N 398 VAL CA C N S 399 VAL C C N N 400 VAL O O N N 401 VAL CB C N N 402 VAL CG1 C N N 403 VAL CG2 C N N 404 VAL OXT O N N 405 VAL H H N N 406 VAL H2 H N N 407 VAL HA H N N 408 VAL HB H N N 409 VAL HG11 H N N 410 VAL HG12 H N N 411 VAL HG13 H N N 412 VAL HG21 H N N 413 VAL HG22 H N N 414 VAL HG23 H N N 415 VAL HXT H N N 416 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6IN C1 C2 sing Y N 1 6IN C1 C6 doub Y N 2 6IN C1 O41 sing N N 3 6IN C2 C3 doub Y N 4 6IN C2 H2 sing N N 5 6IN C3 C4 sing Y N 6 6IN C3 H3 sing N N 7 6IN C4 C5 doub Y N 8 6IN C4 N10 sing Y N 9 6IN C5 C6 sing Y N 10 6IN C5 C12 sing Y N 11 6IN C6 H6 sing N N 12 6IN N10 C7 sing Y N 13 6IN N10 C13 sing N N 14 6IN C7 C12 doub Y N 15 6IN C7 C27 sing N N 16 6IN C12 C32 sing N N 17 6IN C13 C14 sing N N 18 6IN C13 H131 sing N N 19 6IN C13 H132 sing N N 20 6IN C14 C17 doub Y N 21 6IN C14 C21 sing Y N 22 6IN C17 C18 sing Y N 23 6IN C17 H17 sing N N 24 6IN C18 C19 doub Y N 25 6IN C18 H18 sing N N 26 6IN C19 C20 sing Y N 27 6IN C19 H19 sing N N 28 6IN C20 C21 doub Y N 29 6IN C20 H20 sing N N 30 6IN C21 H21 sing N N 31 6IN C27 H271 sing N N 32 6IN C27 H272 sing N N 33 6IN C27 H273 sing N N 34 6IN C32 C34 sing N N 35 6IN C32 H321 sing N N 36 6IN C32 H322 sing N N 37 6IN C34 N37 sing N N 38 6IN C34 O40 doub N N 39 6IN N37 H371 sing N N 40 6IN N37 H372 sing N N 41 6IN O41 C42 sing N N 42 6IN C42 C43 sing N N 43 6IN C42 H421 sing N N 44 6IN C42 H422 sing N N 45 6IN C43 C46 sing N N 46 6IN C43 H431 sing N N 47 6IN C43 H432 sing N N 48 6IN C46 C49 sing N N 49 6IN C46 H461 sing N N 50 6IN C46 H462 sing N N 51 6IN C49 O52 sing N N 52 6IN C49 O54 doub N N 53 6IN O52 HXT sing N N 54 ALA N CA sing N N 55 ALA N H sing N N 56 ALA N H2 sing N N 57 ALA CA C sing N N 58 ALA CA CB sing N N 59 ALA CA HA sing N N 60 ALA C O doub N N 61 ALA C OXT sing N N 62 ALA CB HB1 sing N N 63 ALA CB HB2 sing N N 64 ALA CB HB3 sing N N 65 ALA OXT HXT sing N N 66 ARG N CA sing N N 67 ARG N H sing N N 68 ARG N H2 sing N N 69 ARG CA C sing N N 70 ARG CA CB sing N N 71 ARG CA HA sing N N 72 ARG C O doub N N 73 ARG C OXT sing N N 74 ARG CB CG sing N N 75 ARG CB HB2 sing N N 76 ARG CB HB3 sing N N 77 ARG CG CD sing N N 78 ARG CG HG2 sing N N 79 ARG CG HG3 sing N N 80 ARG CD NE sing N N 81 ARG CD HD2 sing N N 82 ARG CD HD3 sing N N 83 ARG NE CZ sing N N 84 ARG NE HE sing N N 85 ARG CZ NH1 sing N N 86 ARG CZ NH2 doub N N 87 ARG NH1 HH11 sing N N 88 ARG NH1 HH12 sing N N 89 ARG NH2 HH21 sing N N 90 ARG NH2 HH22 sing N N 91 ARG OXT HXT sing N N 92 ASN N CA sing N N 93 ASN N H sing N N 94 ASN N H2 sing N N 95 ASN CA C sing N N 96 ASN CA CB sing N N 97 ASN CA HA sing N N 98 ASN C O doub N N 99 ASN C OXT sing N N 100 ASN CB CG sing N N 101 ASN CB HB2 sing N N 102 ASN CB HB3 sing N N 103 ASN CG OD1 doub N N 104 ASN CG ND2 sing N N 105 ASN ND2 HD21 sing N N 106 ASN ND2 HD22 sing N N 107 ASN OXT HXT sing N N 108 ASP N CA sing N N 109 ASP N H sing N N 110 ASP N H2 sing N N 111 ASP CA C sing N N 112 ASP CA CB sing N N 113 ASP CA HA sing N N 114 ASP C O doub N N 115 ASP C OXT sing N N 116 ASP CB CG sing N N 117 ASP CB HB2 sing N N 118 ASP CB HB3 sing N N 119 ASP CG OD1 doub N N 120 ASP CG OD2 sing N N 121 ASP OD2 HD2 sing N N 122 ASP OXT HXT sing N N 123 CYS N CA sing N N 124 CYS N H sing N N 125 CYS N H2 sing N N 126 CYS CA C sing N N 127 CYS CA CB sing N N 128 CYS CA HA sing N N 129 CYS C O doub N N 130 CYS C OXT sing N N 131 CYS CB SG sing N N 132 CYS CB HB2 sing N N 133 CYS CB HB3 sing N N 134 CYS SG HG sing N N 135 CYS OXT HXT sing N N 136 GLN N CA sing N N 137 GLN N H sing N N 138 GLN N H2 sing N N 139 GLN CA C sing N N 140 GLN CA CB sing N N 141 GLN CA HA sing N N 142 GLN C O doub N N 143 GLN C OXT sing N N 144 GLN CB CG sing N N 145 GLN CB HB2 sing N N 146 GLN CB HB3 sing N N 147 GLN CG CD sing N N 148 GLN CG HG2 sing N N 149 GLN CG HG3 sing N N 150 GLN CD OE1 doub N N 151 GLN CD NE2 sing N N 152 GLN NE2 HE21 sing N N 153 GLN NE2 HE22 sing N N 154 GLN OXT HXT sing N N 155 GLU N CA sing N N 156 GLU N H sing N N 157 GLU N H2 sing N N 158 GLU CA C sing N N 159 GLU CA CB sing N N 160 GLU CA HA sing N N 161 GLU C O doub N N 162 GLU C OXT sing N N 163 GLU CB CG sing N N 164 GLU CB HB2 sing N N 165 GLU CB HB3 sing N N 166 GLU CG CD sing N N 167 GLU CG HG2 sing N N 168 GLU CG HG3 sing N N 169 GLU CD OE1 doub N N 170 GLU CD OE2 sing N N 171 GLU OE2 HE2 sing N N 172 GLU OXT HXT sing N N 173 GLY N CA sing N N 174 GLY N H sing N N 175 GLY N H2 sing N N 176 GLY CA C sing N N 177 GLY CA HA2 sing N N 178 GLY CA HA3 sing N N 179 GLY C O doub N N 180 GLY C OXT sing N N 181 GLY OXT HXT sing N N 182 HIS N CA sing N N 183 HIS N H sing N N 184 HIS N H2 sing N N 185 HIS CA C sing N N 186 HIS CA CB sing N N 187 HIS CA HA sing N N 188 HIS C O doub N N 189 HIS C OXT sing N N 190 HIS CB CG sing N N 191 HIS CB HB2 sing N N 192 HIS CB HB3 sing N N 193 HIS CG ND1 sing Y N 194 HIS CG CD2 doub Y N 195 HIS ND1 CE1 doub Y N 196 HIS ND1 HD1 sing N N 197 HIS CD2 NE2 sing Y N 198 HIS CD2 HD2 sing N N 199 HIS CE1 NE2 sing Y N 200 HIS CE1 HE1 sing N N 201 HIS NE2 HE2 sing N N 202 HIS OXT HXT sing N N 203 HOH O H1 sing N N 204 HOH O H2 sing N N 205 ILE N CA sing N N 206 ILE N H sing N N 207 ILE N H2 sing N N 208 ILE CA C sing N N 209 ILE CA CB sing N N 210 ILE CA HA sing N N 211 ILE C O doub N N 212 ILE C OXT sing N N 213 ILE CB CG1 sing N N 214 ILE CB CG2 sing N N 215 ILE CB HB sing N N 216 ILE CG1 CD1 sing N N 217 ILE CG1 HG12 sing N N 218 ILE CG1 HG13 sing N N 219 ILE CG2 HG21 sing N N 220 ILE CG2 HG22 sing N N 221 ILE CG2 HG23 sing N N 222 ILE CD1 HD11 sing N N 223 ILE CD1 HD12 sing N N 224 ILE CD1 HD13 sing N N 225 ILE OXT HXT sing N N 226 LEU N CA sing N N 227 LEU N H sing N N 228 LEU N H2 sing N N 229 LEU CA C sing N N 230 LEU CA CB sing N N 231 LEU CA HA sing N N 232 LEU C O doub N N 233 LEU C OXT sing N N 234 LEU CB CG sing N N 235 LEU CB HB2 sing N N 236 LEU CB HB3 sing N N 237 LEU CG CD1 sing N N 238 LEU CG CD2 sing N N 239 LEU CG HG sing N N 240 LEU CD1 HD11 sing N N 241 LEU CD1 HD12 sing N N 242 LEU CD1 HD13 sing N N 243 LEU CD2 HD21 sing N N 244 LEU CD2 HD22 sing N N 245 LEU CD2 HD23 sing N N 246 LEU OXT HXT sing N N 247 LYS N CA sing N N 248 LYS N H sing N N 249 LYS N H2 sing N N 250 LYS CA C sing N N 251 LYS CA CB sing N N 252 LYS CA HA sing N N 253 LYS C O doub N N 254 LYS C OXT sing N N 255 LYS CB CG sing N N 256 LYS CB HB2 sing N N 257 LYS CB HB3 sing N N 258 LYS CG CD sing N N 259 LYS CG HG2 sing N N 260 LYS CG HG3 sing N N 261 LYS CD CE sing N N 262 LYS CD HD2 sing N N 263 LYS CD HD3 sing N N 264 LYS CE NZ sing N N 265 LYS CE HE2 sing N N 266 LYS CE HE3 sing N N 267 LYS NZ HZ1 sing N N 268 LYS NZ HZ2 sing N N 269 LYS NZ HZ3 sing N N 270 LYS OXT HXT sing N N 271 MET N CA sing N N 272 MET N H sing N N 273 MET N H2 sing N N 274 MET CA C sing N N 275 MET CA CB sing N N 276 MET CA HA sing N N 277 MET C O doub N N 278 MET C OXT sing N N 279 MET CB CG sing N N 280 MET CB HB2 sing N N 281 MET CB HB3 sing N N 282 MET CG SD sing N N 283 MET CG HG2 sing N N 284 MET CG HG3 sing N N 285 MET SD CE sing N N 286 MET CE HE1 sing N N 287 MET CE HE2 sing N N 288 MET CE HE3 sing N N 289 MET OXT HXT sing N N 290 PHE N CA sing N N 291 PHE N H sing N N 292 PHE N H2 sing N N 293 PHE CA C sing N N 294 PHE CA CB sing N N 295 PHE CA HA sing N N 296 PHE C O doub N N 297 PHE C OXT sing N N 298 PHE CB CG sing N N 299 PHE CB HB2 sing N N 300 PHE CB HB3 sing N N 301 PHE CG CD1 doub Y N 302 PHE CG CD2 sing Y N 303 PHE CD1 CE1 sing Y N 304 PHE CD1 HD1 sing N N 305 PHE CD2 CE2 doub Y N 306 PHE CD2 HD2 sing N N 307 PHE CE1 CZ doub Y N 308 PHE CE1 HE1 sing N N 309 PHE CE2 CZ sing Y N 310 PHE CE2 HE2 sing N N 311 PHE CZ HZ sing N N 312 PHE OXT HXT sing N N 313 PRO N CA sing N N 314 PRO N CD sing N N 315 PRO N H sing N N 316 PRO CA C sing N N 317 PRO CA CB sing N N 318 PRO CA HA sing N N 319 PRO C O doub N N 320 PRO C OXT sing N N 321 PRO CB CG sing N N 322 PRO CB HB2 sing N N 323 PRO CB HB3 sing N N 324 PRO CG CD sing N N 325 PRO CG HG2 sing N N 326 PRO CG HG3 sing N N 327 PRO CD HD2 sing N N 328 PRO CD HD3 sing N N 329 PRO OXT HXT sing N N 330 SER N CA sing N N 331 SER N H sing N N 332 SER N H2 sing N N 333 SER CA C sing N N 334 SER CA CB sing N N 335 SER CA HA sing N N 336 SER C O doub N N 337 SER C OXT sing N N 338 SER CB OG sing N N 339 SER CB HB2 sing N N 340 SER CB HB3 sing N N 341 SER OG HG sing N N 342 SER OXT HXT sing N N 343 THR N CA sing N N 344 THR N H sing N N 345 THR N H2 sing N N 346 THR CA C sing N N 347 THR CA CB sing N N 348 THR CA HA sing N N 349 THR C O doub N N 350 THR C OXT sing N N 351 THR CB OG1 sing N N 352 THR CB CG2 sing N N 353 THR CB HB sing N N 354 THR OG1 HG1 sing N N 355 THR CG2 HG21 sing N N 356 THR CG2 HG22 sing N N 357 THR CG2 HG23 sing N N 358 THR OXT HXT sing N N 359 TYR N CA sing N N 360 TYR N H sing N N 361 TYR N H2 sing N N 362 TYR CA C sing N N 363 TYR CA CB sing N N 364 TYR CA HA sing N N 365 TYR C O doub N N 366 TYR C OXT sing N N 367 TYR CB CG sing N N 368 TYR CB HB2 sing N N 369 TYR CB HB3 sing N N 370 TYR CG CD1 doub Y N 371 TYR CG CD2 sing Y N 372 TYR CD1 CE1 sing Y N 373 TYR CD1 HD1 sing N N 374 TYR CD2 CE2 doub Y N 375 TYR CD2 HD2 sing N N 376 TYR CE1 CZ doub Y N 377 TYR CE1 HE1 sing N N 378 TYR CE2 CZ sing Y N 379 TYR CE2 HE2 sing N N 380 TYR CZ OH sing N N 381 TYR OH HH sing N N 382 TYR OXT HXT sing N N 383 VAL N CA sing N N 384 VAL N H sing N N 385 VAL N H2 sing N N 386 VAL CA C sing N N 387 VAL CA CB sing N N 388 VAL CA HA sing N N 389 VAL C O doub N N 390 VAL C OXT sing N N 391 VAL CB CG1 sing N N 392 VAL CB CG2 sing N N 393 VAL CB HB sing N N 394 VAL CG1 HG11 sing N N 395 VAL CG1 HG12 sing N N 396 VAL CG1 HG13 sing N N 397 VAL CG2 HG21 sing N N 398 VAL CG2 HG22 sing N N 399 VAL CG2 HG23 sing N N 400 VAL OXT HXT sing N N 401 # _atom_sites.entry_id 1DB5 _atom_sites.fract_transf_matrix[1][1] 0.013096 _atom_sites.fract_transf_matrix[1][2] 0.007561 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015122 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010925 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S # loop_