data_1DB6 # _entry.id 1DB6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DB6 pdb_00001db6 10.2210/pdb1db6/pdb RCSB RCSB009942 ? ? WWPDB D_1000009942 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ARG '2ARG contains a different DNA aptamer complexed with argininamide' unspecified PDB 1OLD '1OlD is a similar DNA aptamer' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DB6 _pdbx_database_status.recvd_initial_deposition_date 1999-11-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Robertson, S.A.' 1 'Harada, K.' 2 'Frankel, A.D.' 3 'Wemmer, D.E.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure determination and binding kinetics of a DNA aptamer-argininamide complex.' Biochemistry 39 946 954 2000 BICHAW US 0006-2960 0033 ? 10653638 10.1021/bi9915061 1 'Identification of Two Novel Arginine Binding DNAs' 'Embo J.' 14 5798 5811 1995 EMJODG UK 0261-4189 0897 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Robertson, S.A.' 1 ? primary 'Harada, K.' 2 ? primary 'Frankel, A.D.' 3 ? primary 'Wemmer, D.E.' 4 ? 1 'Harada, K.' 5 ? 1 'Frankel, A.D.' 6 ? # _cell.entry_id 1DB6 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DB6 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn DNA 6729.329 1 ? ? ? ? 2 non-polymer syn ARGININEAMIDE 174.224 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DC)(DG)(DT)(DG)(DT)(DC)(DG)(DC)(DC)(DT)(DG)(DG)(DT) (DC)(DG) ; _entity_poly.pdbx_seq_one_letter_code_can CGACCAACGTGTCGCCTGGTCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DC n 1 5 DC n 1 6 DA n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DT n 1 11 DG n 1 12 DT n 1 13 DC n 1 14 DG n 1 15 DC n 1 16 DC n 1 17 DT n 1 18 DG n 1 19 DG n 1 20 DT n 1 21 DC n 1 22 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Sequence is derived from in-vitro selection experiments. Sequences were chemically sythethesized.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DB6 _struct_ref.pdbx_db_accession 1DB6 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DB6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1DB6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AAR 'L-peptide linking' n ARGININEAMIDE ? 'C6 H16 N5 O 1' 174.224 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY' 2 1 1 DQF-COSY 3 1 1 TOCSY 4 2 2 '2D NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 293 ambient 6.2 '0-25 mM NaCl' ? K 2 278 ambient 6.2 '0-25 mM NaCl' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.44 mM DNA, 10 mM sodium phosphate buffer, pH 6.2, 0.05 mM EDTA, 0-25 mM NaCl, 8-10 equivalents argininamide' '99.99% D2O' 2 '1.44 mM DNA, 10 mM sodium phosphate buffer, pH 6.2, 0.05 mM EDTA, 0-25 mM NaCl, 8-10 equivalents argininamide' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? GE OMEGA 500 2 ? Bruker AMX 600 # _pdbx_nmr_refine.entry_id 1DB6 _pdbx_nmr_refine.method ;Distance restraints were obtained from relaxation rate matrix calculations. Structures were calculated using simulated annealing and molecular dynamics ; _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1DB6 _pdbx_nmr_details.text ;Data were also collected for sequences containing 5-methyl cytosine substituted independently at positions 15 and 16, and for the sequence with inosine substituted at postion 14. ; # _pdbx_nmr_ensemble.entry_id 1DB6 _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ;structures with acceptable covalent geometry,structures with favorable non- bond energy,structures with the least restraint violations,structures with the lowest energy ; _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1DB6 _pdbx_nmr_representative.conformer_id 6 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal Felix 950 'data analysis' 'Molecular Simulations, Inc' 1 MARDIGRAS 3.2 'iterative matrix relaxation' 'Brandan A. Borgias, Paul D. Thomas, He Liu, Anil Kumar, Marco Tonelli' 2 Discover 2.97 refinement 'Molecular Simulations, Inc' 3 # _exptl.entry_id 1DB6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1DB6 _struct.title ;SOLUTION STRUCTURE OF THE DNA APTAMER 5'-CGACCAACGTGTCGCCTGGTCG-3' COMPLEXED WITH ARGININAMIDE ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DB6 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'APTAMER, ARGININE, ARGININAMIDE, SINGLE-STRAND, HAIRPIN, SELEX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 22 N1 ? ? A DC 1 A DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 22 O6 ? ? A DC 1 A DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 22 N2 ? ? A DC 1 A DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 21 N3 ? ? A DG 2 A DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 21 O2 ? ? A DG 2 A DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 21 N4 ? ? A DG 2 A DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DG 19 O6 ? ? A DA 3 A DG 19 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog8 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 20 N3 ? ? A DA 3 A DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 20 O4 ? ? A DA 3 A DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 18 O6 ? ? A DC 4 A DG 18 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog11 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 19 N1 ? ? A DC 4 A DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 19 O6 ? ? A DC 4 A DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 19 N2 ? ? A DC 4 A DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 18 N1 ? ? A DC 5 A DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 18 O6 ? ? A DC 5 A DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 18 N2 ? ? A DC 5 A DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DC 15 N3 ? ? A DA 6 A DC 15 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog18 hydrog ? ? A DA 6 N7 ? ? ? 1_555 A DC 15 N4 ? ? A DA 6 A DC 15 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog19 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 17 N3 ? ? A DA 6 A DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 17 O4 ? ? A DA 6 A DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DC 15 N3 ? ? A DA 7 A DC 15 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog22 hydrog ? ? A DA 7 N7 ? ? ? 1_555 A DC 15 N4 ? ? A DA 7 A DC 15 1_555 ? ? ? ? ? ? TYPE_25_PAIR ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 16 N3 ? ? A DG 9 A DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 16 O2 ? ? A DG 9 A DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 16 N4 ? ? A DG 9 A DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DG 14 O6 ? ? A DT 10 A DG 14 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog27 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DG 14 N1 ? ? A DT 10 A DG 14 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id AAR _struct_site.pdbx_auth_seq_id 23 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 8 _struct_site.details 'BINDING SITE FOR RESIDUE AAR A 23' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC A 8 ? DC A 8 . ? 1_555 ? 2 AC1 8 DG A 9 ? DG A 9 . ? 1_555 ? 3 AC1 8 DT A 12 ? DT A 12 . ? 1_555 ? 4 AC1 8 DC A 13 ? DC A 13 . ? 1_555 ? 5 AC1 8 DG A 14 ? DG A 14 . ? 1_555 ? 6 AC1 8 DC A 16 ? DC A 16 . ? 1_555 ? 7 AC1 8 DT A 17 ? DT A 17 . ? 1_555 ? 8 AC1 8 DG A 18 ? DG A 18 . ? 1_555 ? # _database_PDB_matrix.entry_id 1DB6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DB6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DT 12 12 12 DT T A . n A 1 13 DC 13 13 13 DC C A . n A 1 14 DG 14 14 14 DG G A . n A 1 15 DC 15 15 15 DC C A . n A 1 16 DC 16 16 16 DC C A . n A 1 17 DT 17 17 17 DT T A . n A 1 18 DG 18 18 18 DG G A . n A 1 19 DG 19 19 19 DG G A . n A 1 20 DT 20 20 20 DT T A . n A 1 21 DC 21 21 21 DC C A . n A 1 22 DG 22 22 22 DG G A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id AAR _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 23 _pdbx_nonpoly_scheme.auth_seq_num 23 _pdbx_nonpoly_scheme.pdb_mon_id AAR _pdbx_nonpoly_scheme.auth_mon_id AAR _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-02-03 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H3 A DT 10 ? ? O6 A DG 14 ? ? 1.57 2 2 O2 A DT 10 ? ? "H2'" A DT 12 ? ? 1.55 3 2 H3 A DT 10 ? ? O6 A DG 14 ? ? 1.58 4 3 O2 A DT 10 ? ? "H2'" A DT 12 ? ? 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.19 108.30 2.89 0.30 N 2 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.87 108.30 3.57 0.30 N 3 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.73 108.30 3.43 0.30 N 4 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.75 108.30 2.45 0.30 N 5 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.57 108.30 2.27 0.30 N 6 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.55 108.30 3.25 0.30 N 7 1 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.76 108.30 2.46 0.30 N 8 1 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 112.17 108.30 3.87 0.30 N 9 1 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.74 108.30 2.44 0.30 N 10 1 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.15 108.30 1.85 0.30 N 11 1 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.65 108.30 3.35 0.30 N 12 1 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.15 108.30 1.85 0.30 N 13 1 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.40 108.30 2.10 0.30 N 14 1 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.52 108.30 2.22 0.30 N 15 1 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.87 108.30 3.57 0.30 N 16 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.12 108.30 3.82 0.30 N 17 2 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.42 108.30 3.12 0.30 N 18 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.04 108.30 2.74 0.30 N 19 2 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.39 108.30 2.09 0.30 N 20 2 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.60 108.30 2.30 0.30 N 21 2 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.29 108.30 2.99 0.30 N 22 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.70 108.30 3.40 0.30 N 23 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.64 108.30 2.34 0.30 N 24 2 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.68 108.30 3.38 0.30 N 25 2 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.49 108.30 3.19 0.30 N 26 2 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.21 108.30 1.91 0.30 N 27 2 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.82 108.30 3.52 0.30 N 28 2 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.73 108.30 2.43 0.30 N 29 2 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 112.10 108.30 3.80 0.30 N 30 3 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.31 108.30 4.01 0.30 N 31 3 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.28 108.30 1.98 0.30 N 32 3 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.75 108.30 3.45 0.30 N 33 3 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.90 108.30 2.60 0.30 N 34 3 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.35 108.30 3.05 0.30 N 35 3 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.24 108.30 1.94 0.30 N 36 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.40 108.30 2.10 0.30 N 37 3 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.53 108.30 2.23 0.30 N 38 3 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 113.58 108.30 5.28 0.30 N 39 3 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.26 122.90 -3.64 0.60 N 40 3 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.27 108.30 2.97 0.30 N 41 3 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.51 108.30 2.21 0.30 N 42 3 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 112.51 108.30 4.21 0.30 N 43 3 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.63 108.30 2.33 0.30 N 44 3 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.72 108.30 2.42 0.30 N 45 3 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 112.00 108.30 3.70 0.30 N 46 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.55 108.30 4.25 0.30 N 47 4 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.24 108.30 2.94 0.30 N 48 4 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.85 108.30 2.55 0.30 N 49 4 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.19 108.30 1.89 0.30 N 50 4 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.54 108.30 2.24 0.30 N 51 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.67 108.30 2.37 0.30 N 52 4 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.30 108.30 3.00 0.30 N 53 4 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.46 108.30 3.16 0.30 N 54 4 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.03 108.30 3.73 0.30 N 55 4 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.28 122.90 -3.62 0.60 N 56 4 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.37 108.30 2.07 0.30 N 57 4 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.38 108.30 2.08 0.30 N 58 4 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 112.08 108.30 3.78 0.30 N 59 4 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.32 108.30 2.02 0.30 N 60 4 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.63 108.30 2.33 0.30 N 61 4 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.84 108.30 2.54 0.30 N 62 4 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 112.16 108.30 3.86 0.30 N 63 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.54 108.30 3.24 0.30 N 64 5 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.59 108.30 3.29 0.30 N 65 5 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.81 108.30 3.51 0.30 N 66 5 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.94 108.30 2.64 0.30 N 67 5 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.30 108.30 2.00 0.30 N 68 5 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.99 108.30 2.69 0.30 N 69 5 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 111.19 108.30 2.89 0.30 N 70 5 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.01 108.30 2.71 0.30 N 71 5 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.70 108.30 4.40 0.30 N 72 5 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.29 108.30 1.99 0.30 N 73 5 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.18 108.30 1.88 0.30 N 74 5 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 112.39 108.30 4.09 0.30 N 75 5 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.62 108.30 2.32 0.30 N 76 5 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.29 108.30 1.99 0.30 N 77 5 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.10 108.30 1.80 0.30 N 78 5 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.63 108.30 3.33 0.30 N 79 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.40 108.30 4.10 0.30 N 80 6 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.25 108.30 1.95 0.30 N 81 6 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.18 108.30 3.88 0.30 N 82 6 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.96 108.30 2.66 0.30 N 83 6 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.14 108.30 1.84 0.30 N 84 6 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.67 108.30 3.37 0.30 N 85 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.55 108.30 2.25 0.30 N 86 6 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.36 108.30 3.06 0.30 N 87 6 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.24 108.30 3.94 0.30 N 88 6 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 119.29 122.90 -3.61 0.60 N 89 6 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.33 108.30 2.03 0.30 N 90 6 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.30 108.30 2.00 0.30 N 91 6 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 112.23 108.30 3.93 0.30 N 92 6 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.53 108.30 2.23 0.30 N 93 6 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.25 108.30 1.95 0.30 N 94 6 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.99 108.30 2.69 0.30 N 95 6 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 112.38 108.30 4.08 0.30 N 96 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.51 108.30 3.21 0.30 N 97 7 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.50 108.30 3.20 0.30 N 98 7 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.38 108.30 3.08 0.30 N 99 7 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.22 108.30 1.92 0.30 N 100 7 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.17 108.30 1.87 0.30 N 101 7 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 110.94 108.30 2.64 0.30 N 102 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.13 108.30 3.83 0.30 N 103 7 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.56 108.30 2.26 0.30 N 104 7 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.38 108.30 2.08 0.30 N 105 7 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 111.50 108.30 3.20 0.30 N 106 7 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 111.08 108.30 2.78 0.30 N 107 7 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.32 108.30 3.02 0.30 N 108 7 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.41 108.30 2.11 0.30 N 109 7 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.70 108.30 2.40 0.30 N 110 7 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.73 108.30 3.43 0.30 N 111 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.37 108.30 3.07 0.30 N 112 8 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 111.78 108.30 3.48 0.30 N 113 8 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.39 108.30 3.09 0.30 N 114 8 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.13 108.30 1.83 0.30 N 115 8 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 111.45 108.30 3.15 0.30 N 116 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 113.02 108.30 4.72 0.30 N 117 8 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.27 108.30 1.97 0.30 N 118 8 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 111.01 108.30 2.71 0.30 N 119 8 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.55 108.30 2.25 0.30 N 120 8 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.18 108.30 1.88 0.30 N 121 8 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.05 108.30 2.75 0.30 N 122 8 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.72 108.30 2.42 0.30 N 123 8 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.74 108.30 2.44 0.30 N 124 8 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.76 108.30 3.46 0.30 N 125 9 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.35 108.30 3.05 0.30 N 126 9 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.24 108.30 3.94 0.30 N 127 9 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.20 108.30 2.90 0.30 N 128 9 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 110.76 108.30 2.46 0.30 N 129 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.45 108.30 3.15 0.30 N 130 9 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.92 108.30 2.62 0.30 N 131 9 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.24 108.30 1.94 0.30 N 132 9 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 111.01 108.30 2.71 0.30 N 133 9 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 110.12 108.30 1.82 0.30 N 134 9 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.72 108.30 3.42 0.30 N 135 9 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.23 108.30 1.93 0.30 N 136 9 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.32 108.30 2.02 0.30 N 137 9 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.39 108.30 2.09 0.30 N 138 9 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.55 108.30 3.25 0.30 N 139 10 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.69 108.30 3.39 0.30 N 140 10 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 112.40 108.30 4.10 0.30 N 141 10 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.99 108.30 2.69 0.30 N 142 10 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.02 108.30 2.72 0.30 N 143 10 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.67 108.30 4.37 0.30 N 144 10 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.90 108.30 2.60 0.30 N 145 10 "O4'" A DG 11 ? ? "C1'" A DG 11 ? ? N9 A DG 11 ? ? 110.20 108.30 1.90 0.30 N 146 10 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 110.37 108.30 2.07 0.30 N 147 10 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.41 108.30 2.11 0.30 N 148 10 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.61 108.30 3.31 0.30 N 149 10 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.60 108.30 2.30 0.30 N 150 10 "O4'" A DT 20 ? ? "C1'" A DT 20 ? ? N1 A DT 20 ? ? 110.39 108.30 2.09 0.30 N 151 10 "O4'" A DC 21 ? ? "C1'" A DC 21 ? ? N1 A DC 21 ? ? 110.85 108.30 2.55 0.30 N 152 10 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 112.00 108.30 3.70 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 1 ? ? 0.067 'SIDE CHAIN' 2 1 DC A 15 ? ? 0.068 'SIDE CHAIN' 3 1 DC A 16 ? ? 0.109 'SIDE CHAIN' 4 2 DC A 1 ? ? 0.071 'SIDE CHAIN' 5 2 DG A 14 ? ? 0.068 'SIDE CHAIN' 6 2 DC A 15 ? ? 0.084 'SIDE CHAIN' 7 2 DC A 16 ? ? 0.060 'SIDE CHAIN' 8 3 DC A 1 ? ? 0.069 'SIDE CHAIN' 9 3 DT A 10 ? ? 0.069 'SIDE CHAIN' 10 3 DG A 14 ? ? 0.077 'SIDE CHAIN' 11 3 DC A 15 ? ? 0.089 'SIDE CHAIN' 12 3 DC A 16 ? ? 0.066 'SIDE CHAIN' 13 4 DC A 1 ? ? 0.072 'SIDE CHAIN' 14 4 DG A 14 ? ? 0.079 'SIDE CHAIN' 15 4 DC A 15 ? ? 0.056 'SIDE CHAIN' 16 4 DC A 16 ? ? 0.061 'SIDE CHAIN' 17 5 DC A 8 ? ? 0.057 'SIDE CHAIN' 18 5 DT A 12 ? ? 0.068 'SIDE CHAIN' 19 5 DG A 14 ? ? 0.076 'SIDE CHAIN' 20 5 DC A 15 ? ? 0.080 'SIDE CHAIN' 21 5 DC A 16 ? ? 0.079 'SIDE CHAIN' 22 6 DC A 1 ? ? 0.063 'SIDE CHAIN' 23 6 DG A 14 ? ? 0.079 'SIDE CHAIN' 24 6 DC A 15 ? ? 0.057 'SIDE CHAIN' 25 7 DC A 1 ? ? 0.070 'SIDE CHAIN' 26 7 DG A 14 ? ? 0.066 'SIDE CHAIN' 27 7 DC A 15 ? ? 0.101 'SIDE CHAIN' 28 7 DC A 16 ? ? 0.093 'SIDE CHAIN' 29 8 DC A 1 ? ? 0.068 'SIDE CHAIN' 30 8 DG A 14 ? ? 0.085 'SIDE CHAIN' 31 8 DC A 15 ? ? 0.113 'SIDE CHAIN' 32 8 DC A 16 ? ? 0.095 'SIDE CHAIN' 33 9 DC A 1 ? ? 0.068 'SIDE CHAIN' 34 9 DG A 14 ? ? 0.064 'SIDE CHAIN' 35 9 DC A 15 ? ? 0.089 'SIDE CHAIN' 36 9 DC A 16 ? ? 0.088 'SIDE CHAIN' 37 10 DC A 1 ? ? 0.064 'SIDE CHAIN' 38 10 DG A 14 ? ? 0.089 'SIDE CHAIN' 39 10 DC A 15 ? ? 0.080 'SIDE CHAIN' 40 10 DC A 16 ? ? 0.087 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DB6 'double helix' 1DB6 'mismatched base pair' 1DB6 'internal loop' 1DB6 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 22 1_555 -0.142 -0.231 0.457 -3.771 -24.242 -4.012 1 A_DC1:DG22_A A 1 ? A 22 ? 19 1 1 A DG 2 1_555 A DC 21 1_555 0.573 -0.202 0.238 -0.483 -21.954 -4.066 2 A_DG2:DC21_A A 2 ? A 21 ? 19 1 1 A DA 3 1_555 A DT 20 1_555 0.292 -0.147 0.274 -0.558 -20.722 -7.902 3 A_DA3:DT20_A A 3 ? A 20 ? 20 1 1 A DC 4 1_555 A DG 19 1_555 -0.514 -0.283 0.614 1.150 -18.041 -6.733 4 A_DC4:DG19_A A 4 ? A 19 ? 19 1 1 A DC 5 1_555 A DG 18 1_555 -0.528 -0.237 0.392 2.573 -23.926 -5.733 5 A_DC5:DG18_A A 5 ? A 18 ? 19 1 1 A DA 6 1_555 A DT 17 1_555 0.343 -0.270 0.670 6.793 -24.759 -11.897 6 A_DA6:DT17_A A 6 ? A 17 ? 20 1 1 A DC 15 1_555 A DA 7 1_555 3.167 -0.972 1.555 -18.410 17.961 -85.381 7 A_DC15:DA7_A A 15 ? A 7 ? 25 4 1 A DG 9 1_555 A DC 16 1_555 -0.010 -0.358 -1.108 -12.807 12.396 -16.074 8 A_DG9:DC16_A A 9 ? A 16 ? 19 1 1 A DT 10 1_555 A DG 14 1_555 -0.395 1.210 0.564 -3.881 6.053 -156.465 9 A_DT10:DG14_A A 10 ? A 14 ? 27 ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 22 1_555 A DG 2 1_555 A DC 21 1_555 -0.094 -0.007 3.220 2.268 16.323 32.594 -2.255 0.462 2.882 27.037 -3.757 36.422 1 AA_DC1DG2:DC21DG22_AA A 1 ? A 22 ? A 2 ? A 21 ? 1 A DG 2 1_555 A DC 21 1_555 A DA 3 1_555 A DT 20 1_555 -0.820 -0.301 2.912 -3.840 1.184 39.865 -0.562 0.802 2.966 1.731 5.615 40.059 2 AA_DG2DA3:DT20DC21_AA A 2 ? A 21 ? A 3 ? A 20 ? 1 A DA 3 1_555 A DT 20 1_555 A DC 4 1_555 A DG 19 1_555 0.197 -1.224 2.960 -4.464 0.553 29.808 -2.454 -1.196 2.878 1.067 8.616 30.138 3 AA_DA3DC4:DG19DT20_AA A 3 ? A 20 ? A 4 ? A 19 ? 1 A DC 4 1_555 A DG 19 1_555 A DC 5 1_555 A DG 18 1_555 0.198 -1.313 2.891 3.622 3.996 32.873 -2.867 0.176 2.723 7.002 -6.347 33.300 4 AA_DC4DC5:DG18DG19_AA A 4 ? A 19 ? A 5 ? A 18 ? 1 A DC 5 1_555 A DG 18 1_555 A DA 6 1_555 A DT 17 1_555 -0.093 -1.038 3.032 -0.107 6.183 36.851 -2.357 0.133 2.827 9.697 0.168 37.349 5 AA_DC5DA6:DT17DG18_AA A 5 ? A 18 ? A 6 ? A 17 ? 1 A DA 6 1_555 A DT 17 1_555 A DC 15 1_555 A DA 7 1_555 0.653 -2.805 -1.464 -147.382 -55.149 -161.365 1.362 0.438 -1.504 27.626 -73.827 -176.358 6 AA_DA6DC15:DA7DT17_AA A 6 ? A 17 ? A 15 ? A 7 ? 1 A DC 15 1_555 A DA 7 1_555 A DG 9 1_555 A DC 16 1_555 0.542 6.654 -2.500 -125.948 15.949 -36.457 -3.497 1.691 -1.143 -10.192 -80.484 -129.806 7 AA_DC15DG9:DC16DA7_AA A 15 ? A 7 ? A 9 ? A 16 ? 1 A DG 9 1_555 A DC 16 1_555 A DT 10 1_555 A DG 14 1_555 -1.459 3.519 4.086 -37.403 -43.400 95.311 2.882 0.300 3.058 -27.625 23.808 107.525 8 AA_DG9DT10:DG14DC16_AA A 9 ? A 16 ? A 10 ? A 14 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ARGININEAMIDE _pdbx_entity_nonpoly.comp_id AAR #