data_1DB8 # _entry.id 1DB8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1DB8 NDB PD0082 RCSB RCSB009944 WWPDB D_1000009944 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.pdb_id 1O3R _pdbx_database_PDB_obs_spr.replace_pdb_id 1DB8 _pdbx_database_PDB_obs_spr.date 2003-04-08 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1DB8 _pdbx_database_status.recvd_initial_deposition_date 1999-11-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, S.' 1 'Vojtechovsky, J.' 2 'Parkinson, G.N.' 3 'Ebright, R.H.' 4 'Berman, H.M.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: DNA Binding Specificity Based on Energetics of DNA Kinking ; J.Mol.Biol. 313 1005 1016 2001 JMOBAK UK 0022-2836 0070 ? ? ? 1 ;Indirect Readout of DNA Sequence at the Primary-kink Site in the CAP-DNA Complex: Alteration of DNA Binding Specificity Through Alteration of DNA Kinking ; J.Mol.Biol. 313 1017 1024 2001 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chen, S.' 1 primary 'Vojtechovsky, J.' 2 primary 'Parkinson, G.N.' 3 primary 'Ebright, R.H.' 4 primary 'Berman, H.M.' 5 1 'Chen, S.' 6 1 'Gunasekera, A.' 7 1 'Zhang, X.' 8 1 'Kunkel, T.A.' 9 1 'Ebright, R.H.' 10 1 'Berman, H.M.' 11 # _cell.entry_id 1DB8 _cell.length_a 76.900 _cell.length_b 76.900 _cell.length_c 143.640 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DB8 _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CATABOLITE GENE ACTIVATOR PROTEIN' 22558.072 1 ? ? ? ? 2 non-polymer syn "ADENOSINE-5'-MONOPHOSPHATE" 347.221 9 ? ? ? ? 3 non-polymer syn "THYMIDINE-5'-MONOPHOSPHATE" 322.208 9 ? ? ? ? 4 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 4 ? ? ? ? 5 non-polymer syn "CYTIDINE-5'-MONOPHOSPHATE" 323.197 4 ? ? ? ? 6 non-polymer syn "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 329.206 2 ? ? ? ? 7 water nat water 18.015 54 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CAP, CAMP RECEPTOR PROTEIN, CAMP-REGULATORY PROTEIN' # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 PRO n 1 3 THR n 1 4 LEU n 1 5 GLU n 1 6 TRP n 1 7 PHE n 1 8 LEU n 1 9 SER n 1 10 HIS n 1 11 CYS n 1 12 HIS n 1 13 ILE n 1 14 HIS n 1 15 LYS n 1 16 TYR n 1 17 PRO n 1 18 SER n 1 19 LYS n 1 20 SER n 1 21 THR n 1 22 LEU n 1 23 ILE n 1 24 HIS n 1 25 GLN n 1 26 GLY n 1 27 GLU n 1 28 LYS n 1 29 ALA n 1 30 GLU n 1 31 THR n 1 32 LEU n 1 33 TYR n 1 34 TYR n 1 35 ILE n 1 36 VAL n 1 37 LYS n 1 38 GLY n 1 39 SER n 1 40 VAL n 1 41 ALA n 1 42 VAL n 1 43 LEU n 1 44 ILE n 1 45 LYS n 1 46 ASP n 1 47 GLU n 1 48 GLU n 1 49 GLY n 1 50 LYS n 1 51 GLU n 1 52 MET n 1 53 ILE n 1 54 LEU n 1 55 SER n 1 56 TYR n 1 57 LEU n 1 58 ASN n 1 59 GLN n 1 60 GLY n 1 61 ASP n 1 62 PHE n 1 63 ILE n 1 64 GLY n 1 65 GLU n 1 66 LEU n 1 67 GLY n 1 68 LEU n 1 69 PHE n 1 70 GLU n 1 71 GLU n 1 72 GLY n 1 73 GLN n 1 74 GLU n 1 75 ARG n 1 76 SER n 1 77 ALA n 1 78 TRP n 1 79 VAL n 1 80 ARG n 1 81 ALA n 1 82 LYS n 1 83 THR n 1 84 ALA n 1 85 CYS n 1 86 GLU n 1 87 VAL n 1 88 ALA n 1 89 GLU n 1 90 ILE n 1 91 SER n 1 92 TYR n 1 93 LYS n 1 94 LYS n 1 95 PHE n 1 96 ARG n 1 97 GLN n 1 98 LEU n 1 99 ILE n 1 100 GLN n 1 101 VAL n 1 102 ASN n 1 103 PRO n 1 104 ASP n 1 105 ILE n 1 106 LEU n 1 107 MET n 1 108 ARG n 1 109 LEU n 1 110 SER n 1 111 ALA n 1 112 GLN n 1 113 MET n 1 114 ALA n 1 115 ARG n 1 116 ARG n 1 117 LEU n 1 118 GLN n 1 119 VAL n 1 120 THR n 1 121 SER n 1 122 GLU n 1 123 LYS n 1 124 VAL n 1 125 GLY n 1 126 ASN n 1 127 LEU n 1 128 ALA n 1 129 PHE n 1 130 LEU n 1 131 ASP n 1 132 VAL n 1 133 THR n 1 134 GLY n 1 135 ARG n 1 136 ILE n 1 137 ALA n 1 138 GLN n 1 139 THR n 1 140 LEU n 1 141 LEU n 1 142 ASN n 1 143 LEU n 1 144 ALA n 1 145 LYS n 1 146 GLN n 1 147 PRO n 1 148 ASP n 1 149 ALA n 1 150 MET n 1 151 THR n 1 152 HIS n 1 153 PRO n 1 154 ASP n 1 155 GLY n 1 156 MET n 1 157 GLN n 1 158 ILE n 1 159 LYS n 1 160 ILE n 1 161 THR n 1 162 ARG n 1 163 GLN n 1 164 GLU n 1 165 ILE n 1 166 GLY n 1 167 GLN n 1 168 ILE n 1 169 VAL n 1 170 GLY n 1 171 CYS n 1 172 SER n 1 173 ARG n 1 174 GLU n 1 175 THR n 1 176 VAL n 1 177 GLY n 1 178 ARG n 1 179 ILE n 1 180 LEU n 1 181 LYS n 1 182 MET n 1 183 LEU n 1 184 GLU n 1 185 ASP n 1 186 GLN n 1 187 ASN n 1 188 LEU n 1 189 ILE n 1 190 SER n 1 191 ALA n 1 192 HIS n 1 193 GLY n 1 194 LYS n 1 195 THR n 1 196 ILE n 1 197 VAL n 1 198 VAL n 1 199 TYR n 1 200 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bacteria _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name SWS _struct_ref.db_code CRP_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DB8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 200 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P03020 _struct_ref_seq.db_align_beg 9 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 208 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 207 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CMP non-polymer . "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 'CYCLIC AMP; CAMP' 'C10 H12 N5 O6 P' 329.206 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 T 'DNA linking' . "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1DB8 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.44 _exptl_crystal.density_percent_sol 77.37 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.23 _exptl_crystal_grow.pdbx_details ;PEG 8000, 1,4-DIOXANE, MES, NACL, MGCL2, CAMP, pH 6.23, VAPOR DIFFUSION, HANGING DROP at 293K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 1,4-DIOXANE 1 2 3 1 2 1 MES 4 5 6 1 3 1 NACL 7 8 9 1 4 1 MGCL2 10 11 12 1 5 1 CAMP 13 14 15 1 6 1 'PEG 8000' 16 17 18 1 7 2 'PEG 8000' 19 20 21 # _diffrn.id 1 _diffrn.ambient_temp 108 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 1997-09-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.100 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_wavelength 1.100 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DB8 _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20 _reflns.d_resolution_high 3 _reflns.number_obs 9519 _reflns.number_all 9769 _reflns.percent_possible_obs 92.5 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 10.8 _reflns.B_iso_Wilson_estimate 32.75 _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 3 _reflns_shell.d_res_low 3.16 _reflns_shell.percent_possible_all 97.1 _reflns_shell.Rmerge_I_obs 0.306 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 5.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DB8 _refine.ls_number_reflns_obs 9519 _refine.ls_number_reflns_all 9519 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2839655.76 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 92.5 _refine.ls_R_factor_obs 0.231 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.231 _refine.ls_R_factor_R_free 0.279 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 953 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 54.7 _refine.aniso_B[1][1] 10.35 _refine.aniso_B[2][2] 10.35 _refine.aniso_B[3][3] -20.69 _refine.aniso_B[1][2] 17.28 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.389 _refine.solvent_model_param_bsol 64.05 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1DB8 _refine_analyze.Luzzati_coordinate_error_obs 0.33 _refine_analyze.Luzzati_sigma_a_obs 0.13 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.45 _refine_analyze.Luzzati_sigma_a_free 0.30 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1581 _refine_hist.pdbx_number_atoms_nucleic_acid 527 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 2204 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 20.00 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 27.0 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.06 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.75 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 4.31 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 4.18 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.93 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.19 _refine_ls_shell.number_reflns_R_work 1480 _refine_ls_shell.R_factor_R_work 0.265 _refine_ls_shell.percent_reflns_obs 96.4 _refine_ls_shell.R_factor_R_free 0.366 _refine_ls_shell.R_factor_R_free_error 0.030 _refine_ls_shell.percent_reflns_R_free 8.9 _refine_ls_shell.number_reflns_R_free 144 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 CMP.PARAM CMP.TOP 'X-RAY DIFFRACTION' 4 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1DB8 _struct.title 'PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF CAP-DNA COMPLEXES' _struct.pdbx_descriptor 'CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DB8 _struct_keywords.pdbx_keywords 'GENE REGULATION/DNA' _struct_keywords.text 'PROTEIN-DNA COMPLEX, CAP, CAP-DNA, CATABOLITE GENE ACTIVATOR PROTEIN, CAMP RECEPTOR PROTEIN, CRP, GENE REGULATION-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 4 ? K N N 2 ? L N N 3 ? M N N 5 ? N N N 3 ? O N N 2 ? P N N 4 ? Q N N 2 ? R N N 3 ? S N N 5 ? T N N 4 ? U N N 5 ? V N N 2 ? W N N 3 ? X N N 3 ? Y N N 3 ? Z N N 3 ? AA N N 3 ? BA N N 6 ? CA N N 6 ? DA N N 7 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 1 ? SER A 9 ? ASP A 8 SER A 16 1 ? 9 HELX_P HELX_P2 2 GLU A 65 ? PHE A 69 ? GLU A 72 PHE A 76 5 ? 5 HELX_P HELX_P3 3 TYR A 92 ? ASN A 102 ? TYR A 99 ASN A 109 1 ? 11 HELX_P HELX_P4 4 ASN A 102 ? LEU A 130 ? ASN A 109 LEU A 137 1 ? 29 HELX_P HELX_P5 5 ASP A 131 ? GLN A 146 ? ASP A 138 GLN A 153 1 ? 16 HELX_P HELX_P6 6 THR A 161 ? GLY A 170 ? THR A 168 GLY A 177 1 ? 10 HELX_P HELX_P7 7 SER A 172 ? GLN A 186 ? SER A 179 GLN A 193 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? B A . N6 ? ? ? 1_555 AA T . O4 ? ? B A -2 C T -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B A . N1 ? ? ? 1_555 AA T . N3 ? ? B A -2 C T -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C A . N1 ? ? ? 1_555 Z T . N3 ? ? B A -1 C T -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C A . N6 ? ? ? 1_555 Z T . O4 ? ? B A -1 C T -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? D A . N1 ? ? ? 1_555 Y T . N3 ? ? B A 1 C T 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? D A . N6 ? ? ? 1_555 Y T . O4 ? ? B A 1 C T 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? E A . N1 ? ? ? 1_555 X T . N3 ? ? B A 2 C T 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? E A . N6 ? ? ? 1_555 X T . O4 ? ? B A 2 C T 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? F A . N1 ? ? ? 1_555 W T . N3 ? ? B A 3 C T 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? F A . N6 ? ? ? 1_555 W T . O4 ? ? B A 3 C T 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? G T . O4 ? ? ? 1_555 V A . N6 ? ? B T 4 C A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? G T . N3 ? ? ? 1_555 V A . N1 ? ? B T 4 C A 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? H G . N1 ? ? ? 1_555 U C . N3 ? ? B G 5 C C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? H G . O6 ? ? ? 1_555 U C . N4 ? ? B G 5 C C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? H G . N2 ? ? ? 1_555 U C . O2 ? ? B G 5 C C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? I C . N4 ? ? ? 1_555 T G . O6 ? ? B C 6 C G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? I C . O2 ? ? ? 1_555 T G . N2 ? ? B C 6 C G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? I C . N3 ? ? ? 1_555 T G . N1 ? ? B C 6 C G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? J G . O6 ? ? ? 1_555 S C . N4 ? ? B G 7 C C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? J G . N2 ? ? ? 1_555 S C . O2 ? ? B G 7 C C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? J G . N1 ? ? ? 1_555 S C . N3 ? ? B G 7 C C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? K A . N1 ? ? ? 1_555 R T . N3 ? ? B A 8 C T 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? K A . N6 ? ? ? 1_555 R T . O4 ? ? B A 8 C T 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? L T . N3 ? ? ? 1_555 Q A . N1 ? ? B T 9 C A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? L T . O4 ? ? ? 1_555 Q A . N6 ? ? B T 9 C A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 12 ? TYR A 16 ? HIS A 19 TYR A 23 A 2 CYS A 85 ? SER A 91 ? CYS A 92 SER A 98 A 3 THR A 31 ? LYS A 37 ? THR A 38 LYS A 44 A 4 PHE A 62 ? ILE A 63 ? PHE A 69 ILE A 70 B 1 THR A 21 ? ILE A 23 ? THR A 28 ILE A 30 B 2 TRP A 78 ? ALA A 81 ? TRP A 85 ALA A 88 B 3 VAL A 40 ? LYS A 45 ? VAL A 47 LYS A 52 B 4 GLU A 51 ? LEU A 57 ? GLU A 58 LEU A 64 C 1 MET A 150 ? HIS A 152 ? MET A 157 HIS A 159 C 2 GLY A 155 ? LYS A 159 ? GLY A 162 LYS A 166 C 3 THR A 195 ? TYR A 199 ? THR A 202 TYR A 206 C 4 ILE A 189 ? HIS A 192 ? ILE A 196 HIS A 199 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 16 ? O TYR A 23 N CYS A 85 ? N CYS A 92 A 2 3 O ILE A 90 ? O ILE A 97 N LEU A 32 ? N LEU A 39 A 3 4 N TYR A 33 ? N TYR A 40 O ILE A 63 ? O ILE A 70 B 1 2 O ILE A 23 ? O ILE A 30 N VAL A 79 ? N VAL A 86 B 2 3 O ARG A 80 ? O ARG A 87 N ALA A 41 ? N ALA A 48 B 3 4 O ILE A 44 ? O ILE A 51 N MET A 52 ? N MET A 59 C 1 2 N HIS A 152 ? N HIS A 159 O GLY A 155 ? O GLY A 162 C 2 3 N ILE A 158 ? N ILE A 165 O ILE A 196 ? O ILE A 203 C 3 4 N VAL A 197 ? N VAL A 204 O SER A 190 ? O SER A 197 # _database_PDB_matrix.entry_id 1DB8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DB8 _atom_sites.fract_transf_matrix[1][1] 0.013004 _atom_sites.fract_transf_matrix[1][2] 0.007508 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015016 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006962 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 8 8 ASP ASP A . n A 1 2 PRO 2 9 9 PRO PRO A . n A 1 3 THR 3 10 10 THR THR A . n A 1 4 LEU 4 11 11 LEU LEU A . n A 1 5 GLU 5 12 12 GLU GLU A . n A 1 6 TRP 6 13 13 TRP TRP A . n A 1 7 PHE 7 14 14 PHE PHE A . n A 1 8 LEU 8 15 15 LEU LEU A . n A 1 9 SER 9 16 16 SER SER A . n A 1 10 HIS 10 17 17 HIS HIS A . n A 1 11 CYS 11 18 18 CYS CYS A . n A 1 12 HIS 12 19 19 HIS HIS A . n A 1 13 ILE 13 20 20 ILE ILE A . n A 1 14 HIS 14 21 21 HIS HIS A . n A 1 15 LYS 15 22 22 LYS LYS A . n A 1 16 TYR 16 23 23 TYR TYR A . n A 1 17 PRO 17 24 24 PRO PRO A . n A 1 18 SER 18 25 25 SER SER A . n A 1 19 LYS 19 26 26 LYS LYS A . n A 1 20 SER 20 27 27 SER SER A . n A 1 21 THR 21 28 28 THR THR A . n A 1 22 LEU 22 29 29 LEU LEU A . n A 1 23 ILE 23 30 30 ILE ILE A . n A 1 24 HIS 24 31 31 HIS HIS A . n A 1 25 GLN 25 32 32 GLN GLN A . n A 1 26 GLY 26 33 33 GLY GLY A . n A 1 27 GLU 27 34 34 GLU GLU A . n A 1 28 LYS 28 35 35 LYS LYS A . n A 1 29 ALA 29 36 36 ALA ALA A . n A 1 30 GLU 30 37 37 GLU GLU A . n A 1 31 THR 31 38 38 THR THR A . n A 1 32 LEU 32 39 39 LEU LEU A . n A 1 33 TYR 33 40 40 TYR TYR A . n A 1 34 TYR 34 41 41 TYR TYR A . n A 1 35 ILE 35 42 42 ILE ILE A . n A 1 36 VAL 36 43 43 VAL VAL A . n A 1 37 LYS 37 44 44 LYS LYS A . n A 1 38 GLY 38 45 45 GLY GLY A . n A 1 39 SER 39 46 46 SER SER A . n A 1 40 VAL 40 47 47 VAL VAL A . n A 1 41 ALA 41 48 48 ALA ALA A . n A 1 42 VAL 42 49 49 VAL VAL A . n A 1 43 LEU 43 50 50 LEU LEU A . n A 1 44 ILE 44 51 51 ILE ILE A . n A 1 45 LYS 45 52 52 LYS LYS A . n A 1 46 ASP 46 53 53 ASP ASP A . n A 1 47 GLU 47 54 54 GLU GLU A . n A 1 48 GLU 48 55 55 GLU GLU A . n A 1 49 GLY 49 56 56 GLY GLY A . n A 1 50 LYS 50 57 57 LYS LYS A . n A 1 51 GLU 51 58 58 GLU GLU A . n A 1 52 MET 52 59 59 MET MET A . n A 1 53 ILE 53 60 60 ILE ILE A . n A 1 54 LEU 54 61 61 LEU LEU A . n A 1 55 SER 55 62 62 SER SER A . n A 1 56 TYR 56 63 63 TYR TYR A . n A 1 57 LEU 57 64 64 LEU LEU A . n A 1 58 ASN 58 65 65 ASN ASN A . n A 1 59 GLN 59 66 66 GLN GLN A . n A 1 60 GLY 60 67 67 GLY GLY A . n A 1 61 ASP 61 68 68 ASP ASP A . n A 1 62 PHE 62 69 69 PHE PHE A . n A 1 63 ILE 63 70 70 ILE ILE A . n A 1 64 GLY 64 71 71 GLY GLY A . n A 1 65 GLU 65 72 72 GLU GLU A . n A 1 66 LEU 66 73 73 LEU LEU A . n A 1 67 GLY 67 74 74 GLY GLY A . n A 1 68 LEU 68 75 75 LEU LEU A . n A 1 69 PHE 69 76 76 PHE PHE A . n A 1 70 GLU 70 77 77 GLU GLU A . n A 1 71 GLU 71 78 78 GLU GLU A . n A 1 72 GLY 72 79 79 GLY GLY A . n A 1 73 GLN 73 80 80 GLN GLN A . n A 1 74 GLU 74 81 81 GLU GLU A . n A 1 75 ARG 75 82 82 ARG ARG A . n A 1 76 SER 76 83 83 SER SER A . n A 1 77 ALA 77 84 84 ALA ALA A . n A 1 78 TRP 78 85 85 TRP TRP A . n A 1 79 VAL 79 86 86 VAL VAL A . n A 1 80 ARG 80 87 87 ARG ARG A . n A 1 81 ALA 81 88 88 ALA ALA A . n A 1 82 LYS 82 89 89 LYS LYS A . n A 1 83 THR 83 90 90 THR THR A . n A 1 84 ALA 84 91 91 ALA ALA A . n A 1 85 CYS 85 92 92 CYS CYS A . n A 1 86 GLU 86 93 93 GLU GLU A . n A 1 87 VAL 87 94 94 VAL VAL A . n A 1 88 ALA 88 95 95 ALA ALA A . n A 1 89 GLU 89 96 96 GLU GLU A . n A 1 90 ILE 90 97 97 ILE ILE A . n A 1 91 SER 91 98 98 SER SER A . n A 1 92 TYR 92 99 99 TYR TYR A . n A 1 93 LYS 93 100 100 LYS LYS A . n A 1 94 LYS 94 101 101 LYS LYS A . n A 1 95 PHE 95 102 102 PHE PHE A . n A 1 96 ARG 96 103 103 ARG ARG A . n A 1 97 GLN 97 104 104 GLN GLN A . n A 1 98 LEU 98 105 105 LEU LEU A . n A 1 99 ILE 99 106 106 ILE ILE A . n A 1 100 GLN 100 107 107 GLN GLN A . n A 1 101 VAL 101 108 108 VAL VAL A . n A 1 102 ASN 102 109 109 ASN ASN A . n A 1 103 PRO 103 110 110 PRO PRO A . n A 1 104 ASP 104 111 111 ASP ASP A . n A 1 105 ILE 105 112 112 ILE ILE A . n A 1 106 LEU 106 113 113 LEU LEU A . n A 1 107 MET 107 114 114 MET MET A . n A 1 108 ARG 108 115 115 ARG ARG A . n A 1 109 LEU 109 116 116 LEU LEU A . n A 1 110 SER 110 117 117 SER SER A . n A 1 111 ALA 111 118 118 ALA ALA A . n A 1 112 GLN 112 119 119 GLN GLN A . n A 1 113 MET 113 120 120 MET MET A . n A 1 114 ALA 114 121 121 ALA ALA A . n A 1 115 ARG 115 122 122 ARG ARG A . n A 1 116 ARG 116 123 123 ARG ARG A . n A 1 117 LEU 117 124 124 LEU LEU A . n A 1 118 GLN 118 125 125 GLN GLN A . n A 1 119 VAL 119 126 126 VAL VAL A . n A 1 120 THR 120 127 127 THR THR A . n A 1 121 SER 121 128 128 SER SER A . n A 1 122 GLU 122 129 129 GLU GLU A . n A 1 123 LYS 123 130 130 LYS LYS A . n A 1 124 VAL 124 131 131 VAL VAL A . n A 1 125 GLY 125 132 132 GLY GLY A . n A 1 126 ASN 126 133 133 ASN ASN A . n A 1 127 LEU 127 134 134 LEU LEU A . n A 1 128 ALA 128 135 135 ALA ALA A . n A 1 129 PHE 129 136 136 PHE PHE A . n A 1 130 LEU 130 137 137 LEU LEU A . n A 1 131 ASP 131 138 138 ASP ASP A . n A 1 132 VAL 132 139 139 VAL VAL A . n A 1 133 THR 133 140 140 THR THR A . n A 1 134 GLY 134 141 141 GLY GLY A . n A 1 135 ARG 135 142 142 ARG ARG A . n A 1 136 ILE 136 143 143 ILE ILE A . n A 1 137 ALA 137 144 144 ALA ALA A . n A 1 138 GLN 138 145 145 GLN GLN A . n A 1 139 THR 139 146 146 THR THR A . n A 1 140 LEU 140 147 147 LEU LEU A . n A 1 141 LEU 141 148 148 LEU LEU A . n A 1 142 ASN 142 149 149 ASN ASN A . n A 1 143 LEU 143 150 150 LEU LEU A . n A 1 144 ALA 144 151 151 ALA ALA A . n A 1 145 LYS 145 152 152 LYS LYS A . n A 1 146 GLN 146 153 153 GLN GLN A . n A 1 147 PRO 147 154 154 PRO PRO A . n A 1 148 ASP 148 155 155 ASP ASP A . n A 1 149 ALA 149 156 156 ALA ALA A . n A 1 150 MET 150 157 157 MET MET A . n A 1 151 THR 151 158 158 THR THR A . n A 1 152 HIS 152 159 159 HIS HIS A . n A 1 153 PRO 153 160 160 PRO PRO A . n A 1 154 ASP 154 161 161 ASP ASP A . n A 1 155 GLY 155 162 162 GLY GLY A . n A 1 156 MET 156 163 163 MET MET A . n A 1 157 GLN 157 164 164 GLN GLN A . n A 1 158 ILE 158 165 165 ILE ILE A . n A 1 159 LYS 159 166 166 LYS LYS A . n A 1 160 ILE 160 167 167 ILE ILE A . n A 1 161 THR 161 168 168 THR THR A . n A 1 162 ARG 162 169 169 ARG ARG A . n A 1 163 GLN 163 170 170 GLN GLN A . n A 1 164 GLU 164 171 171 GLU GLU A . n A 1 165 ILE 165 172 172 ILE ILE A . n A 1 166 GLY 166 173 173 GLY GLY A . n A 1 167 GLN 167 174 174 GLN GLN A . n A 1 168 ILE 168 175 175 ILE ILE A . n A 1 169 VAL 169 176 176 VAL VAL A . n A 1 170 GLY 170 177 177 GLY GLY A . n A 1 171 CYS 171 178 178 CYS CYS A . n A 1 172 SER 172 179 179 SER SER A . n A 1 173 ARG 173 180 180 ARG ARG A . n A 1 174 GLU 174 181 181 GLU GLU A . n A 1 175 THR 175 182 182 THR THR A . n A 1 176 VAL 176 183 183 VAL VAL A . n A 1 177 GLY 177 184 184 GLY GLY A . n A 1 178 ARG 178 185 185 ARG ARG A . n A 1 179 ILE 179 186 186 ILE ILE A . n A 1 180 LEU 180 187 187 LEU LEU A . n A 1 181 LYS 181 188 188 LYS LYS A . n A 1 182 MET 182 189 189 MET MET A . n A 1 183 LEU 183 190 190 LEU LEU A . n A 1 184 GLU 184 191 191 GLU GLU A . n A 1 185 ASP 185 192 192 ASP ASP A . n A 1 186 GLN 186 193 193 GLN GLN A . n A 1 187 ASN 187 194 194 ASN ASN A . n A 1 188 LEU 188 195 195 LEU LEU A . n A 1 189 ILE 189 196 196 ILE ILE A . n A 1 190 SER 190 197 197 SER SER A . n A 1 191 ALA 191 198 198 ALA ALA A . n A 1 192 HIS 192 199 199 HIS HIS A . n A 1 193 GLY 193 200 200 GLY GLY A . n A 1 194 LYS 194 201 201 LYS LYS A . n A 1 195 THR 195 202 202 THR THR A . n A 1 196 ILE 196 203 203 ILE ILE A . n A 1 197 VAL 197 204 204 VAL VAL A . n A 1 198 VAL 198 205 205 VAL VAL A . n A 1 199 TYR 199 206 206 TYR TYR A . n A 1 200 GLY 200 207 207 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A 1 -2 -2 A A B . C 2 A 1 -1 -1 A A B . D 2 A 1 1 1 A A B . E 2 A 1 2 2 A A B . F 2 A 1 3 3 A A B . G 3 T 1 4 4 T T B . H 4 G 1 5 5 G G B . I 5 C 1 6 6 C C B . J 4 G 1 7 7 G G B . K 2 A 1 8 8 A A B . L 3 T 1 9 9 T T B . M 5 C 1 13 13 C C C . N 3 T 1 12 12 T T C . O 2 A 1 11 11 A A C . P 4 G 1 10 10 G G C . Q 2 A 1 9 9 A A C . R 3 T 1 8 8 T T C . S 5 C 1 7 7 C C C . T 4 G 1 6 6 G G C . U 5 C 1 5 5 C C C . V 2 A 1 4 4 A A C . W 3 T 1 3 3 T T C . X 3 T 1 2 2 T T C . Y 3 T 1 1 1 T T C . Z 3 T 1 -1 -1 T T C . AA 3 T 1 -2 -2 T T C . BA 6 CMP 1 1 1 CMP CMP ? . CA 6 CMP 1 2 2 CMP CMP ? . DA 7 HOH 1 100 100 HOH TIP ? . DA 7 HOH 2 101 101 HOH TIP ? . DA 7 HOH 3 102 102 HOH TIP ? . DA 7 HOH 4 103 103 HOH TIP ? . DA 7 HOH 5 104 104 HOH TIP ? . DA 7 HOH 6 105 105 HOH TIP ? . DA 7 HOH 7 106 106 HOH TIP ? . DA 7 HOH 8 107 107 HOH TIP ? . DA 7 HOH 9 108 108 HOH TIP ? . DA 7 HOH 10 109 109 HOH TIP ? . DA 7 HOH 11 110 110 HOH TIP ? . DA 7 HOH 12 111 111 HOH TIP ? . DA 7 HOH 13 112 112 HOH TIP ? . DA 7 HOH 14 113 113 HOH TIP ? . DA 7 HOH 15 114 114 HOH TIP ? . DA 7 HOH 16 115 115 HOH TIP ? . DA 7 HOH 17 116 116 HOH TIP ? . DA 7 HOH 18 117 117 HOH TIP ? . DA 7 HOH 19 118 118 HOH TIP ? . DA 7 HOH 20 119 119 HOH TIP ? . DA 7 HOH 21 120 120 HOH TIP ? . DA 7 HOH 22 121 121 HOH TIP ? . DA 7 HOH 23 122 122 HOH TIP ? . DA 7 HOH 24 123 123 HOH TIP ? . DA 7 HOH 25 124 124 HOH TIP ? . DA 7 HOH 26 125 125 HOH TIP ? . DA 7 HOH 27 126 126 HOH TIP ? . DA 7 HOH 28 127 127 HOH TIP ? . DA 7 HOH 29 128 128 HOH TIP ? . DA 7 HOH 30 129 129 HOH TIP ? . DA 7 HOH 31 130 130 HOH TIP ? . DA 7 HOH 32 131 131 HOH TIP ? . DA 7 HOH 33 132 132 HOH TIP ? . DA 7 HOH 34 133 133 HOH TIP ? . DA 7 HOH 35 134 134 HOH TIP ? . DA 7 HOH 36 135 135 HOH TIP ? . DA 7 HOH 37 136 136 HOH TIP ? . DA 7 HOH 38 137 137 HOH TIP ? . DA 7 HOH 39 138 138 HOH TIP ? . DA 7 HOH 40 139 139 HOH TIP ? . DA 7 HOH 41 140 140 HOH TIP ? . DA 7 HOH 42 141 141 HOH TIP ? . DA 7 HOH 43 142 142 HOH TIP ? . DA 7 HOH 44 143 143 HOH TIP ? . DA 7 HOH 45 144 144 HOH TIP ? . DA 7 HOH 46 145 145 HOH TIP ? . DA 7 HOH 47 146 146 HOH TIP ? . DA 7 HOH 48 147 147 HOH TIP ? . DA 7 HOH 49 148 148 HOH TIP ? . DA 7 HOH 50 149 149 HOH TIP ? . DA 7 HOH 51 150 150 HOH TIP ? . DA 7 HOH 52 151 151 HOH TIP ? . DA 7 HOH 53 152 152 HOH TIP ? . DA 7 HOH 54 153 153 HOH TIP ? . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-11-16 2 'Structure model' 1 1 2003-04-08 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data collection' . ? 1 SCALA 'data reduction' . ? 2 AMoRE 'model building' . ? 3 CNS refinement 0.5 ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O3* C A 11 ? ? P C G 10 ? ? 1.59 2 1 O3* B G 5 ? ? P B C 6 ? ? 1.60 3 1 O3* B C 6 ? ? P B G 7 ? ? 1.60 4 1 O3* C T -1 ? ? P C T -2 ? ? 1.60 5 1 O3* C T 3 ? ? P C T 2 ? ? 1.60 6 1 O3* C C 7 ? ? P C G 6 ? ? 1.60 7 1 O3* C G 10 ? ? P C A 9 ? ? 1.61 8 1 O3* C A 9 ? ? P C T 8 ? ? 1.61 9 1 O3* B T 4 ? ? P B G 5 ? ? 1.61 10 1 O3* B A -1 ? ? P B A 1 ? ? 1.61 11 1 O3* C T 1 ? ? P C T -1 ? ? 1.61 12 1 O3* B A 1 ? ? P B A 2 ? ? 1.61 13 1 O3* B A 2 ? ? P B A 3 ? ? 1.61 14 1 O3* C C 5 ? ? P C A 4 ? ? 1.61 15 1 O3* B A 3 ? ? P B T 4 ? ? 1.61 16 1 O3* B G 7 ? ? P B A 8 ? ? 1.61 17 1 O3* C T 2 ? ? P C T 1 ? ? 1.61 18 1 O3* C A 4 ? ? P C T 3 ? ? 1.61 19 1 O3* C T 8 ? ? P C C 7 ? ? 1.61 20 1 O3* C G 6 ? ? P C C 5 ? ? 1.61 21 1 O3* C T 12 ? ? P C A 11 ? ? 1.61 22 1 O3* B A -2 ? ? P B A -1 ? ? 1.62 23 1 O3* C C 13 ? ? P C T 12 ? ? 1.62 24 1 O3* B A 8 ? ? P B T 9 ? ? 1.62 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 10 ? ? -68.46 4.08 2 1 LEU A 11 ? ? -93.84 -65.16 3 1 SER A 25 ? ? -49.31 159.09 4 1 ASN A 65 ? ? -125.99 -168.88 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B A -2 ? OP3 ? B A 1 OP3 2 1 N 1 B A -2 ? P ? B A 1 P 3 1 N 1 B A -2 ? OP1 ? B A 1 OP1 4 1 N 1 B A -2 ? OP2 ? B A 1 OP2 5 1 N 1 B A -2 ? "O5'" ? B A 1 "O5'" 6 1 N 1 B A -2 ? "C5'" ? B A 1 "C5'" 7 1 N 1 B A -2 ? "C4'" ? B A 1 "C4'" 8 1 N 1 B A -2 ? "O4'" ? B A 1 "O4'" 9 1 N 1 B A -2 ? "C3'" ? B A 1 "C3'" 10 1 N 1 B A -2 ? "O3'" ? B A 1 "O3'" 11 1 N 1 B A -2 ? "C2'" ? B A 1 "C2'" 12 1 N 1 B A -2 ? "O2'" ? B A 1 "O2'" 13 1 N 1 B A -2 ? "C1'" ? B A 1 "C1'" 14 1 N 1 B A -1 ? OP3 ? C A 1 OP3 15 1 N 1 B A -1 ? OP1 ? C A 1 OP1 16 1 N 1 B A -1 ? OP2 ? C A 1 OP2 17 1 N 1 B A -1 ? "O5'" ? C A 1 "O5'" 18 1 N 1 B A -1 ? "C5'" ? C A 1 "C5'" 19 1 N 1 B A -1 ? "C4'" ? C A 1 "C4'" 20 1 N 1 B A -1 ? "O4'" ? C A 1 "O4'" 21 1 N 1 B A -1 ? "C3'" ? C A 1 "C3'" 22 1 N 1 B A -1 ? "O3'" ? C A 1 "O3'" 23 1 N 1 B A -1 ? "C2'" ? C A 1 "C2'" 24 1 N 1 B A -1 ? "O2'" ? C A 1 "O2'" 25 1 N 1 B A -1 ? "C1'" ? C A 1 "C1'" 26 1 N 1 B A 1 ? OP3 ? D A 1 OP3 27 1 N 1 B A 1 ? OP1 ? D A 1 OP1 28 1 N 1 B A 1 ? OP2 ? D A 1 OP2 29 1 N 1 B A 1 ? "O5'" ? D A 1 "O5'" 30 1 N 1 B A 1 ? "C5'" ? D A 1 "C5'" 31 1 N 1 B A 1 ? "C4'" ? D A 1 "C4'" 32 1 N 1 B A 1 ? "O4'" ? D A 1 "O4'" 33 1 N 1 B A 1 ? "C3'" ? D A 1 "C3'" 34 1 N 1 B A 1 ? "O3'" ? D A 1 "O3'" 35 1 N 1 B A 1 ? "C2'" ? D A 1 "C2'" 36 1 N 1 B A 1 ? "O2'" ? D A 1 "O2'" 37 1 N 1 B A 1 ? "C1'" ? D A 1 "C1'" 38 1 N 1 B A 2 ? OP3 ? E A 1 OP3 39 1 N 1 B A 2 ? OP1 ? E A 1 OP1 40 1 N 1 B A 2 ? OP2 ? E A 1 OP2 41 1 N 1 B A 2 ? "O5'" ? E A 1 "O5'" 42 1 N 1 B A 2 ? "C5'" ? E A 1 "C5'" 43 1 N 1 B A 2 ? "C4'" ? E A 1 "C4'" 44 1 N 1 B A 2 ? "O4'" ? E A 1 "O4'" 45 1 N 1 B A 2 ? "C3'" ? E A 1 "C3'" 46 1 N 1 B A 2 ? "O3'" ? E A 1 "O3'" 47 1 N 1 B A 2 ? "C2'" ? E A 1 "C2'" 48 1 N 1 B A 2 ? "O2'" ? E A 1 "O2'" 49 1 N 1 B A 2 ? "C1'" ? E A 1 "C1'" 50 1 N 1 B A 3 ? OP3 ? F A 1 OP3 51 1 N 1 B A 3 ? OP1 ? F A 1 OP1 52 1 N 1 B A 3 ? OP2 ? F A 1 OP2 53 1 N 1 B A 3 ? "O5'" ? F A 1 "O5'" 54 1 N 1 B A 3 ? "C5'" ? F A 1 "C5'" 55 1 N 1 B A 3 ? "C4'" ? F A 1 "C4'" 56 1 N 1 B A 3 ? "O4'" ? F A 1 "O4'" 57 1 N 1 B A 3 ? "C3'" ? F A 1 "C3'" 58 1 N 1 B A 3 ? "O3'" ? F A 1 "O3'" 59 1 N 1 B A 3 ? "C2'" ? F A 1 "C2'" 60 1 N 1 B A 3 ? "O2'" ? F A 1 "O2'" 61 1 N 1 B A 3 ? "C1'" ? F A 1 "C1'" 62 1 N 1 B T 4 ? OP3 ? G T 1 OP3 63 1 N 1 B T 4 ? OP1 ? G T 1 OP1 64 1 N 1 B T 4 ? OP2 ? G T 1 OP2 65 1 N 1 B T 4 ? "O5'" ? G T 1 "O5'" 66 1 N 1 B T 4 ? "C5'" ? G T 1 "C5'" 67 1 N 1 B T 4 ? "C4'" ? G T 1 "C4'" 68 1 N 1 B T 4 ? "O4'" ? G T 1 "O4'" 69 1 N 1 B T 4 ? "C3'" ? G T 1 "C3'" 70 1 N 1 B T 4 ? "O3'" ? G T 1 "O3'" 71 1 N 1 B T 4 ? "C2'" ? G T 1 "C2'" 72 1 N 1 B T 4 ? "C1'" ? G T 1 "C1'" 73 1 N 1 B T 4 ? C7 ? G T 1 C7 74 1 N 1 B G 5 ? OP3 ? H G 1 OP3 75 1 N 1 B G 5 ? OP1 ? H G 1 OP1 76 1 N 1 B G 5 ? OP2 ? H G 1 OP2 77 1 N 1 B G 5 ? "O5'" ? H G 1 "O5'" 78 1 N 1 B G 5 ? "C5'" ? H G 1 "C5'" 79 1 N 1 B G 5 ? "C4'" ? H G 1 "C4'" 80 1 N 1 B G 5 ? "O4'" ? H G 1 "O4'" 81 1 N 1 B G 5 ? "C3'" ? H G 1 "C3'" 82 1 N 1 B G 5 ? "O3'" ? H G 1 "O3'" 83 1 N 1 B G 5 ? "C2'" ? H G 1 "C2'" 84 1 N 1 B G 5 ? "O2'" ? H G 1 "O2'" 85 1 N 1 B G 5 ? "C1'" ? H G 1 "C1'" 86 1 N 1 B C 6 ? OP3 ? I C 1 OP3 87 1 N 1 B C 6 ? OP1 ? I C 1 OP1 88 1 N 1 B C 6 ? OP2 ? I C 1 OP2 89 1 N 1 B C 6 ? "O5'" ? I C 1 "O5'" 90 1 N 1 B C 6 ? "C5'" ? I C 1 "C5'" 91 1 N 1 B C 6 ? "C4'" ? I C 1 "C4'" 92 1 N 1 B C 6 ? "O4'" ? I C 1 "O4'" 93 1 N 1 B C 6 ? "C3'" ? I C 1 "C3'" 94 1 N 1 B C 6 ? "O3'" ? I C 1 "O3'" 95 1 N 1 B C 6 ? "C2'" ? I C 1 "C2'" 96 1 N 1 B C 6 ? "O2'" ? I C 1 "O2'" 97 1 N 1 B C 6 ? "C1'" ? I C 1 "C1'" 98 1 N 1 B G 7 ? OP3 ? J G 1 OP3 99 1 N 1 B G 7 ? OP1 ? J G 1 OP1 100 1 N 1 B G 7 ? OP2 ? J G 1 OP2 101 1 N 1 B G 7 ? "O5'" ? J G 1 "O5'" 102 1 N 1 B G 7 ? "C5'" ? J G 1 "C5'" 103 1 N 1 B G 7 ? "C4'" ? J G 1 "C4'" 104 1 N 1 B G 7 ? "O4'" ? J G 1 "O4'" 105 1 N 1 B G 7 ? "C3'" ? J G 1 "C3'" 106 1 N 1 B G 7 ? "O3'" ? J G 1 "O3'" 107 1 N 1 B G 7 ? "C2'" ? J G 1 "C2'" 108 1 N 1 B G 7 ? "O2'" ? J G 1 "O2'" 109 1 N 1 B G 7 ? "C1'" ? J G 1 "C1'" 110 1 N 1 B A 8 ? OP3 ? K A 1 OP3 111 1 N 1 B A 8 ? OP1 ? K A 1 OP1 112 1 N 1 B A 8 ? OP2 ? K A 1 OP2 113 1 N 1 B A 8 ? "O5'" ? K A 1 "O5'" 114 1 N 1 B A 8 ? "C5'" ? K A 1 "C5'" 115 1 N 1 B A 8 ? "C4'" ? K A 1 "C4'" 116 1 N 1 B A 8 ? "O4'" ? K A 1 "O4'" 117 1 N 1 B A 8 ? "C3'" ? K A 1 "C3'" 118 1 N 1 B A 8 ? "O3'" ? K A 1 "O3'" 119 1 N 1 B A 8 ? "C2'" ? K A 1 "C2'" 120 1 N 1 B A 8 ? "O2'" ? K A 1 "O2'" 121 1 N 1 B A 8 ? "C1'" ? K A 1 "C1'" 122 1 N 1 B T 9 ? OP3 ? L T 1 OP3 123 1 N 1 B T 9 ? OP1 ? L T 1 OP1 124 1 N 1 B T 9 ? OP2 ? L T 1 OP2 125 1 N 1 B T 9 ? "O5'" ? L T 1 "O5'" 126 1 N 1 B T 9 ? "C5'" ? L T 1 "C5'" 127 1 N 1 B T 9 ? "C4'" ? L T 1 "C4'" 128 1 N 1 B T 9 ? "O4'" ? L T 1 "O4'" 129 1 N 1 B T 9 ? "C3'" ? L T 1 "C3'" 130 1 N 1 B T 9 ? "O3'" ? L T 1 "O3'" 131 1 N 1 B T 9 ? "C2'" ? L T 1 "C2'" 132 1 N 1 B T 9 ? "C1'" ? L T 1 "C1'" 133 1 N 1 B T 9 ? C7 ? L T 1 C7 134 1 N 1 C C 13 ? OP3 ? M C 1 OP3 135 1 N 1 C C 13 ? P ? M C 1 P 136 1 N 1 C C 13 ? OP1 ? M C 1 OP1 137 1 N 1 C C 13 ? OP2 ? M C 1 OP2 138 1 N 1 C C 13 ? "O5'" ? M C 1 "O5'" 139 1 N 1 C C 13 ? "C5'" ? M C 1 "C5'" 140 1 N 1 C C 13 ? "C4'" ? M C 1 "C4'" 141 1 N 1 C C 13 ? "O4'" ? M C 1 "O4'" 142 1 N 1 C C 13 ? "C3'" ? M C 1 "C3'" 143 1 N 1 C C 13 ? "O3'" ? M C 1 "O3'" 144 1 N 1 C C 13 ? "C2'" ? M C 1 "C2'" 145 1 N 1 C C 13 ? "O2'" ? M C 1 "O2'" 146 1 N 1 C C 13 ? "C1'" ? M C 1 "C1'" 147 1 N 1 C T 12 ? OP3 ? N T 1 OP3 148 1 N 1 C T 12 ? OP1 ? N T 1 OP1 149 1 N 1 C T 12 ? OP2 ? N T 1 OP2 150 1 N 1 C T 12 ? "O5'" ? N T 1 "O5'" 151 1 N 1 C T 12 ? "C5'" ? N T 1 "C5'" 152 1 N 1 C T 12 ? "C4'" ? N T 1 "C4'" 153 1 N 1 C T 12 ? "O4'" ? N T 1 "O4'" 154 1 N 1 C T 12 ? "C3'" ? N T 1 "C3'" 155 1 N 1 C T 12 ? "O3'" ? N T 1 "O3'" 156 1 N 1 C T 12 ? "C2'" ? N T 1 "C2'" 157 1 N 1 C T 12 ? "C1'" ? N T 1 "C1'" 158 1 N 1 C T 12 ? C7 ? N T 1 C7 159 1 N 1 C A 11 ? OP3 ? O A 1 OP3 160 1 N 1 C A 11 ? OP1 ? O A 1 OP1 161 1 N 1 C A 11 ? OP2 ? O A 1 OP2 162 1 N 1 C A 11 ? "O5'" ? O A 1 "O5'" 163 1 N 1 C A 11 ? "C5'" ? O A 1 "C5'" 164 1 N 1 C A 11 ? "C4'" ? O A 1 "C4'" 165 1 N 1 C A 11 ? "O4'" ? O A 1 "O4'" 166 1 N 1 C A 11 ? "C3'" ? O A 1 "C3'" 167 1 N 1 C A 11 ? "O3'" ? O A 1 "O3'" 168 1 N 1 C A 11 ? "C2'" ? O A 1 "C2'" 169 1 N 1 C A 11 ? "O2'" ? O A 1 "O2'" 170 1 N 1 C A 11 ? "C1'" ? O A 1 "C1'" 171 1 N 1 C G 10 ? OP3 ? P G 1 OP3 172 1 N 1 C G 10 ? OP1 ? P G 1 OP1 173 1 N 1 C G 10 ? OP2 ? P G 1 OP2 174 1 N 1 C G 10 ? "O5'" ? P G 1 "O5'" 175 1 N 1 C G 10 ? "C5'" ? P G 1 "C5'" 176 1 N 1 C G 10 ? "C4'" ? P G 1 "C4'" 177 1 N 1 C G 10 ? "O4'" ? P G 1 "O4'" 178 1 N 1 C G 10 ? "C3'" ? P G 1 "C3'" 179 1 N 1 C G 10 ? "O3'" ? P G 1 "O3'" 180 1 N 1 C G 10 ? "C2'" ? P G 1 "C2'" 181 1 N 1 C G 10 ? "O2'" ? P G 1 "O2'" 182 1 N 1 C G 10 ? "C1'" ? P G 1 "C1'" 183 1 N 1 C A 9 ? OP3 ? Q A 1 OP3 184 1 N 1 C A 9 ? OP1 ? Q A 1 OP1 185 1 N 1 C A 9 ? OP2 ? Q A 1 OP2 186 1 N 1 C A 9 ? "O5'" ? Q A 1 "O5'" 187 1 N 1 C A 9 ? "C5'" ? Q A 1 "C5'" 188 1 N 1 C A 9 ? "C4'" ? Q A 1 "C4'" 189 1 N 1 C A 9 ? "O4'" ? Q A 1 "O4'" 190 1 N 1 C A 9 ? "C3'" ? Q A 1 "C3'" 191 1 N 1 C A 9 ? "O3'" ? Q A 1 "O3'" 192 1 N 1 C A 9 ? "C2'" ? Q A 1 "C2'" 193 1 N 1 C A 9 ? "O2'" ? Q A 1 "O2'" 194 1 N 1 C A 9 ? "C1'" ? Q A 1 "C1'" 195 1 N 1 C T 8 ? OP3 ? R T 1 OP3 196 1 N 1 C T 8 ? OP1 ? R T 1 OP1 197 1 N 1 C T 8 ? OP2 ? R T 1 OP2 198 1 N 1 C T 8 ? "O5'" ? R T 1 "O5'" 199 1 N 1 C T 8 ? "C5'" ? R T 1 "C5'" 200 1 N 1 C T 8 ? "C4'" ? R T 1 "C4'" 201 1 N 1 C T 8 ? "O4'" ? R T 1 "O4'" 202 1 N 1 C T 8 ? "C3'" ? R T 1 "C3'" 203 1 N 1 C T 8 ? "O3'" ? R T 1 "O3'" 204 1 N 1 C T 8 ? "C2'" ? R T 1 "C2'" 205 1 N 1 C T 8 ? "C1'" ? R T 1 "C1'" 206 1 N 1 C T 8 ? C7 ? R T 1 C7 207 1 N 1 C C 7 ? OP3 ? S C 1 OP3 208 1 N 1 C C 7 ? OP1 ? S C 1 OP1 209 1 N 1 C C 7 ? OP2 ? S C 1 OP2 210 1 N 1 C C 7 ? "O5'" ? S C 1 "O5'" 211 1 N 1 C C 7 ? "C5'" ? S C 1 "C5'" 212 1 N 1 C C 7 ? "C4'" ? S C 1 "C4'" 213 1 N 1 C C 7 ? "O4'" ? S C 1 "O4'" 214 1 N 1 C C 7 ? "C3'" ? S C 1 "C3'" 215 1 N 1 C C 7 ? "O3'" ? S C 1 "O3'" 216 1 N 1 C C 7 ? "C2'" ? S C 1 "C2'" 217 1 N 1 C C 7 ? "O2'" ? S C 1 "O2'" 218 1 N 1 C C 7 ? "C1'" ? S C 1 "C1'" 219 1 N 1 C G 6 ? OP3 ? T G 1 OP3 220 1 N 1 C G 6 ? OP1 ? T G 1 OP1 221 1 N 1 C G 6 ? OP2 ? T G 1 OP2 222 1 N 1 C G 6 ? "O5'" ? T G 1 "O5'" 223 1 N 1 C G 6 ? "C5'" ? T G 1 "C5'" 224 1 N 1 C G 6 ? "C4'" ? T G 1 "C4'" 225 1 N 1 C G 6 ? "O4'" ? T G 1 "O4'" 226 1 N 1 C G 6 ? "C3'" ? T G 1 "C3'" 227 1 N 1 C G 6 ? "O3'" ? T G 1 "O3'" 228 1 N 1 C G 6 ? "C2'" ? T G 1 "C2'" 229 1 N 1 C G 6 ? "O2'" ? T G 1 "O2'" 230 1 N 1 C G 6 ? "C1'" ? T G 1 "C1'" 231 1 N 1 C C 5 ? OP3 ? U C 1 OP3 232 1 N 1 C C 5 ? OP1 ? U C 1 OP1 233 1 N 1 C C 5 ? OP2 ? U C 1 OP2 234 1 N 1 C C 5 ? "O5'" ? U C 1 "O5'" 235 1 N 1 C C 5 ? "C5'" ? U C 1 "C5'" 236 1 N 1 C C 5 ? "C4'" ? U C 1 "C4'" 237 1 N 1 C C 5 ? "O4'" ? U C 1 "O4'" 238 1 N 1 C C 5 ? "C3'" ? U C 1 "C3'" 239 1 N 1 C C 5 ? "O3'" ? U C 1 "O3'" 240 1 N 1 C C 5 ? "C2'" ? U C 1 "C2'" 241 1 N 1 C C 5 ? "O2'" ? U C 1 "O2'" 242 1 N 1 C C 5 ? "C1'" ? U C 1 "C1'" 243 1 N 1 C A 4 ? OP3 ? V A 1 OP3 244 1 N 1 C A 4 ? OP1 ? V A 1 OP1 245 1 N 1 C A 4 ? OP2 ? V A 1 OP2 246 1 N 1 C A 4 ? "O5'" ? V A 1 "O5'" 247 1 N 1 C A 4 ? "C5'" ? V A 1 "C5'" 248 1 N 1 C A 4 ? "C4'" ? V A 1 "C4'" 249 1 N 1 C A 4 ? "O4'" ? V A 1 "O4'" 250 1 N 1 C A 4 ? "C3'" ? V A 1 "C3'" 251 1 N 1 C A 4 ? "O3'" ? V A 1 "O3'" 252 1 N 1 C A 4 ? "C2'" ? V A 1 "C2'" 253 1 N 1 C A 4 ? "O2'" ? V A 1 "O2'" 254 1 N 1 C A 4 ? "C1'" ? V A 1 "C1'" 255 1 N 1 C T 3 ? OP3 ? W T 1 OP3 256 1 N 1 C T 3 ? OP1 ? W T 1 OP1 257 1 N 1 C T 3 ? OP2 ? W T 1 OP2 258 1 N 1 C T 3 ? "O5'" ? W T 1 "O5'" 259 1 N 1 C T 3 ? "C5'" ? W T 1 "C5'" 260 1 N 1 C T 3 ? "C4'" ? W T 1 "C4'" 261 1 N 1 C T 3 ? "O4'" ? W T 1 "O4'" 262 1 N 1 C T 3 ? "C3'" ? W T 1 "C3'" 263 1 N 1 C T 3 ? "O3'" ? W T 1 "O3'" 264 1 N 1 C T 3 ? "C2'" ? W T 1 "C2'" 265 1 N 1 C T 3 ? "C1'" ? W T 1 "C1'" 266 1 N 1 C T 3 ? C7 ? W T 1 C7 267 1 N 1 C T 2 ? OP3 ? X T 1 OP3 268 1 N 1 C T 2 ? OP1 ? X T 1 OP1 269 1 N 1 C T 2 ? OP2 ? X T 1 OP2 270 1 N 1 C T 2 ? "O5'" ? X T 1 "O5'" 271 1 N 1 C T 2 ? "C5'" ? X T 1 "C5'" 272 1 N 1 C T 2 ? "C4'" ? X T 1 "C4'" 273 1 N 1 C T 2 ? "O4'" ? X T 1 "O4'" 274 1 N 1 C T 2 ? "C3'" ? X T 1 "C3'" 275 1 N 1 C T 2 ? "O3'" ? X T 1 "O3'" 276 1 N 1 C T 2 ? "C2'" ? X T 1 "C2'" 277 1 N 1 C T 2 ? "C1'" ? X T 1 "C1'" 278 1 N 1 C T 2 ? C7 ? X T 1 C7 279 1 N 1 C T 1 ? OP3 ? Y T 1 OP3 280 1 N 1 C T 1 ? OP1 ? Y T 1 OP1 281 1 N 1 C T 1 ? OP2 ? Y T 1 OP2 282 1 N 1 C T 1 ? "O5'" ? Y T 1 "O5'" 283 1 N 1 C T 1 ? "C5'" ? Y T 1 "C5'" 284 1 N 1 C T 1 ? "C4'" ? Y T 1 "C4'" 285 1 N 1 C T 1 ? "O4'" ? Y T 1 "O4'" 286 1 N 1 C T 1 ? "C3'" ? Y T 1 "C3'" 287 1 N 1 C T 1 ? "O3'" ? Y T 1 "O3'" 288 1 N 1 C T 1 ? "C2'" ? Y T 1 "C2'" 289 1 N 1 C T 1 ? "C1'" ? Y T 1 "C1'" 290 1 N 1 C T 1 ? C7 ? Y T 1 C7 291 1 N 1 C T -1 ? OP3 ? Z T 1 OP3 292 1 N 1 C T -1 ? OP1 ? Z T 1 OP1 293 1 N 1 C T -1 ? OP2 ? Z T 1 OP2 294 1 N 1 C T -1 ? "O5'" ? Z T 1 "O5'" 295 1 N 1 C T -1 ? "C5'" ? Z T 1 "C5'" 296 1 N 1 C T -1 ? "C4'" ? Z T 1 "C4'" 297 1 N 1 C T -1 ? "O4'" ? Z T 1 "O4'" 298 1 N 1 C T -1 ? "C3'" ? Z T 1 "C3'" 299 1 N 1 C T -1 ? "O3'" ? Z T 1 "O3'" 300 1 N 1 C T -1 ? "C2'" ? Z T 1 "C2'" 301 1 N 1 C T -1 ? "C1'" ? Z T 1 "C1'" 302 1 N 1 C T -1 ? C7 ? Z T 1 C7 303 1 N 1 C T -2 ? OP3 ? AA T 1 OP3 304 1 N 1 C T -2 ? OP1 ? AA T 1 OP1 305 1 N 1 C T -2 ? OP2 ? AA T 1 OP2 306 1 N 1 C T -2 ? "O5'" ? AA T 1 "O5'" 307 1 N 1 C T -2 ? "C5'" ? AA T 1 "C5'" 308 1 N 1 C T -2 ? "C4'" ? AA T 1 "C4'" 309 1 N 1 C T -2 ? "O4'" ? AA T 1 "O4'" 310 1 N 1 C T -2 ? "C3'" ? AA T 1 "C3'" 311 1 N 1 C T -2 ? "O3'" ? AA T 1 "O3'" 312 1 N 1 C T -2 ? "C2'" ? AA T 1 "C2'" 313 1 N 1 C T -2 ? "C1'" ? AA T 1 "C1'" 314 1 N 1 C T -2 ? C7 ? AA T 1 C7 315 1 N 1 . CMP 1 ? "O5'" ? BA CMP 1 "O5'" 316 1 N 1 . CMP 1 ? "C5'" ? BA CMP 1 "C5'" 317 1 N 1 . CMP 1 ? "C4'" ? BA CMP 1 "C4'" 318 1 N 1 . CMP 1 ? "O4'" ? BA CMP 1 "O4'" 319 1 N 1 . CMP 1 ? "C3'" ? BA CMP 1 "C3'" 320 1 N 1 . CMP 1 ? "O3'" ? BA CMP 1 "O3'" 321 1 N 1 . CMP 1 ? "C2'" ? BA CMP 1 "C2'" 322 1 N 1 . CMP 1 ? "O2'" ? BA CMP 1 "O2'" 323 1 N 1 . CMP 1 ? "C1'" ? BA CMP 1 "C1'" 324 1 N 1 . CMP 2 ? "O5'" ? CA CMP 1 "O5'" 325 1 N 1 . CMP 2 ? "C5'" ? CA CMP 1 "C5'" 326 1 N 1 . CMP 2 ? "C4'" ? CA CMP 1 "C4'" 327 1 N 1 . CMP 2 ? "O4'" ? CA CMP 1 "O4'" 328 1 N 1 . CMP 2 ? "C3'" ? CA CMP 1 "C3'" 329 1 N 1 . CMP 2 ? "O3'" ? CA CMP 1 "O3'" 330 1 N 1 . CMP 2 ? "C2'" ? CA CMP 1 "C2'" 331 1 N 1 . CMP 2 ? "O2'" ? CA CMP 1 "O2'" 332 1 N 1 . CMP 2 ? "C1'" ? CA CMP 1 "C1'" # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DB8 'double helix' 1DB8 'b-form double helix' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "ADENOSINE-5'-MONOPHOSPHATE" A 3 "THYMIDINE-5'-MONOPHOSPHATE" T 4 "GUANOSINE-5'-MONOPHOSPHATE" G 5 "CYTIDINE-5'-MONOPHOSPHATE" C 6 "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" CMP 7 water HOH #