HEADER IMMUNOGLOBULIN 10-NOV-92 1DBA TITLE THREE-DIMENSIONAL STRUCTURE OF AN ANTI-STEROID FAB' AND PROGESTERONE- TITLE 2 FAB' COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG1-KAPPA DB3 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG1-KAPPA DB3 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 CELL: HYBRIDOMA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 CELL: HYBRIDOMA KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.AREVALO,I.A.WILSON REVDAT 5 13-NOV-24 1DBA 1 REMARK REVDAT 4 05-JUN-24 1DBA 1 REMARK SEQADV SHEET REVDAT 3 25-AUG-09 1DBA 1 SOURCE REVDAT 2 24-FEB-09 1DBA 1 VERSN REVDAT 1 31-OCT-93 1DBA 0 JRNL AUTH J.H.AREVALO,E.A.STURA,M.J.TAUSSIG,I.A.WILSON JRNL TITL THREE-DIMENSIONAL STRUCTURE OF AN ANTI-STEROID FAB' AND JRNL TITL 2 PROGESTERONE-FAB' COMPLEX. JRNL REF J.MOL.BIOL. V. 231 103 1993 JRNL REFN ISSN 0022-2836 JRNL PMID 8496956 JRNL DOI 10.1006/JMBI.1993.1260 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.A.STURA,J.H.AREVALO,A.FEINSTEIN,R.B.HEAP,M.J.TAUSSIG, REMARK 1 AUTH 2 I.A.WILSON REMARK 1 TITL ANALYSIS OF AN ANTI-PROGESTERONE ANTIBODY: VARIABLE CRYSTAL REMARK 1 TITL 2 MORPHOLOGY OF THE FAB' AND STEROID-FAB' COMPLEXES REMARK 1 REF IMMUNOLOGY V. 62 511 1987 REMARK 1 REFN ISSN 0019-2805 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 17193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3354 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 3.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DBA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.40333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 82.80667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.40333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.80667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.40333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 82.80667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 41.40333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 82.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 34 NE2 HIS L 34 CD2 -0.072 REMARK 500 TRP L 163 CG TRP L 163 CD2 -0.104 REMARK 500 HIS L 198 NE2 HIS L 198 CD2 -0.070 REMARK 500 HIS H 212 NE2 HIS H 212 CD2 -0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP L 35 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP L 35 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR L 36 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LYS L 45 CA - CB - CG ANGL. DEV. = -13.4 DEGREES REMARK 500 LEU L 46 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 TYR L 49 CB - CG - CD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG L 54 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG L 77 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG L 77 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 VAL L 133 CG1 - CB - CG2 ANGL. DEV. = -13.9 DEGREES REMARK 500 TRP L 148 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP L 148 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP L 163 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TYR L 173 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG L 211 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 VAL H 18 CA - CB - CG1 ANGL. DEV. = -9.6 DEGREES REMARK 500 CYS H 22 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP H 36 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP H 36 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP H 36 CG - CD2 - CE3 ANGL. DEV. = 5.4 DEGREES REMARK 500 TRP H 47 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP H 47 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP H 47 CG - CD2 - CE3 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP H 50 CE2 - CD2 - CG ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG H 66 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG H 66 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 CYS H 92 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 THR H 93 CA - CB - CG2 ANGL. DEV. = 8.4 DEGREES REMARK 500 TRP H 100 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP H 100 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TYR H 100A CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TRP H 103 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP H 103 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 MET H 137 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU H 140 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 VAL H 152 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 TRP H 157 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP H 157 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 LEU H 178 CA - CB - CG ANGL. DEV. = -14.8 DEGREES REMARK 500 PRO H 199 CA - N - CD ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG H 200 CG - CD - NE ANGL. DEV. = -14.6 DEGREES REMARK 500 ARG H 200 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG H 200 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 SER H 203 N - CA - CB ANGL. DEV. = -9.4 DEGREES REMARK 500 LYS H 222 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 PRO H 227 CA - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 ARG H 228 N - CA - C ANGL. DEV. = -25.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN L 42 -176.16 -171.91 REMARK 500 VAL L 51 -47.74 66.37 REMARK 500 ASP L 60 1.25 -61.29 REMARK 500 SER L 67 149.02 -177.56 REMARK 500 ASP L 110 156.30 -49.01 REMARK 500 ASN L 138 55.37 39.49 REMARK 500 ASP L 151 74.68 -151.49 REMARK 500 SER L 171 23.45 43.41 REMARK 500 ARG L 188 47.34 -106.01 REMARK 500 LYS L 199 -59.06 -20.04 REMARK 500 THR L 200 -1.29 -53.45 REMARK 500 GLU H 44 156.36 -45.84 REMARK 500 TYR H 53 -77.86 -64.38 REMARK 500 ASP H 61 -50.69 -26.34 REMARK 500 GLU H 72 65.09 -115.86 REMARK 500 ASN H 84 -32.60 -36.17 REMARK 500 ALA H 88 -171.53 -177.11 REMARK 500 ARG H 94 99.05 -63.36 REMARK 500 VAL H 98 -73.36 -73.60 REMARK 500 SER H 128 3.51 41.72 REMARK 500 ASN H 135 -65.17 -120.49 REMARK 500 SER H 136 -16.93 -168.24 REMARK 500 SER H 167 -58.59 -135.90 REMARK 500 GLN H 179 87.88 -164.75 REMARK 500 ASP H 183 -13.49 82.68 REMARK 500 PRO H 202 14.33 -67.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG H 200 PRO H 202 -35.11 REMARK 500 PRO H 227 ARG H 228 142.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO H 227 11.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EOH H 229 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH H 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOH H 230 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE SUPPLIED IS THAT OF THE AUTHORS AND IT IS REMARK 999 DESCRIBED IN REFERENCE 1 ABOVE. DBREF 1DBA L 1 211 GB 1589925 AAB09710 1 216 DBREF 1DBA H 114 228 UNP P01868 GC1_MOUSE 1 100 SEQADV 1DBA VAL L 2 GB 1589925 ILE 2 CONFLICT SEQADV 1DBA ILE L 7 GB 1589925 SER 7 CONFLICT SEQADV 1DBA ASN L 14 GB 1589925 SER 14 CONFLICT SEQADV 1DBA LEU L 27B GB 1589925 VAL 29 CONFLICT SEQADV 1DBA ILE L 27C GB 1589925 VAL 30 CONFLICT SEQADV 1DBA HIS L 34 GB 1589925 GLU 39 CONFLICT SEQADV 1DBA TYR L 36 GB 1589925 PHE 41 CONFLICT SEQADV 1DBA MET L 48 GB 1589925 ILE 53 CONFLICT SEQADV 1DBA TYR L 56 GB 1589925 SER 61 CONFLICT SEQADV 1DBA ILE L 85 GB 1589925 VAL 90 CONFLICT SEQADV 1DBA PHE L 87 GB 1589925 TYR 92 CONFLICT SEQADV 1DBA SER L 89 GB 1589925 PHE 94 CONFLICT SEQADV 1DBA SER L 91 GB 1589925 ALA 96 CONFLICT SEQADV 1DBA PRO L 96 GB 1589925 TRP 101 CONFLICT SEQRES 1 L 216 ASP VAL VAL MET THR GLN ILE PRO LEU SER LEU PRO VAL SEQRES 2 L 216 ASN LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 216 GLN SER LEU ILE HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 216 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 216 MET TYR LYS VAL SER ASN ARG PHE TYR GLY VAL PRO ASP SEQRES 6 L 216 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 216 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY ILE TYR SEQRES 8 L 216 PHE CYS SER GLN SER SER HIS VAL PRO PRO THR PHE GLY SEQRES 9 L 216 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 216 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 216 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 216 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 216 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 216 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 216 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 216 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 216 PRO ILE VAL LYS SER PHE ASN ARG SEQRES 1 H 219 GLN ILE GLN LEU VAL GLN SER GLY PRO GLU LEU LYS LYS SEQRES 2 H 219 PRO GLY GLU THR VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 219 TYR ALA PHE THR ASN TYR GLY VAL ASN TRP VAL LYS GLU SEQRES 4 H 219 ALA PRO GLY LYS GLU LEU LYS TRP MET GLY TRP ILE ASN SEQRES 5 H 219 ILE TYR THR GLY GLU PRO THR TYR VAL ASP ASP PHE LYS SEQRES 6 H 219 GLY ARG PHE ALA PHE SER LEU GLU THR SER ALA SER THR SEQRES 7 H 219 ALA TYR LEU GLU ILE ASN ASN LEU LYS ASN GLU ASP THR SEQRES 8 H 219 ALA THR TYR PHE CYS THR ARG GLY ASP TYR VAL ASN TRP SEQRES 9 H 219 TYR PHE ASP VAL TRP GLY ALA GLY THR THR VAL THR VAL SEQRES 10 H 219 SER SER ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 219 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 H 219 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 219 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 219 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 219 LEU SER SER SER VAL THR VAL PRO SER SER PRO ARG PRO SEQRES 16 H 219 SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 219 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG HET EOH H 229 3 HET EOH H 230 3 HETNAM EOH ETHANOL FORMUL 3 EOH 2(C2 H6 O) HELIX 1 1 GLU L 79 LEU L 83 5 5 HELIX 2 2 SER L 121 THR L 126 1 6 HELIX 3 3 THR L 182 ARG L 188 1 7 HELIX 4 4 ALA H 28 ASN H 31 5 4 HELIX 5 5 ASP H 61 LYS H 64 5 4 HELIX 6 6 THR H 73 ALA H 75 5 3 HELIX 7 7 LYS H 83 THR H 87 5 5 HELIX 8 8 SER H 196 GLU H 204 1 6 HELIX 9 9 PRO H 213 SER H 216 5 4 SHEET 1 A 4 MET L 4 ILE L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 N SER L 22 O ILE L 7 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 A 4 PHE L 62 SER L 67 -1 O SER L 63 N LYS L 74 SHEET 1 B 5 ASN L 53 ARG L 54 0 SHEET 2 B 5 LYS L 45 TYR L 49 -1 N TYR L 49 O ASN L 53 SHEET 3 B 5 LEU L 33 GLN L 38 -1 N TRP L 35 O MET L 48 SHEET 4 B 5 ILE L 85 GLN L 90 -1 O ILE L 85 N GLN L 38 SHEET 5 B 5 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 C 6 ASN L 53 ARG L 54 0 SHEET 2 C 6 LYS L 45 TYR L 49 -1 N TYR L 49 O ASN L 53 SHEET 3 C 6 LEU L 33 GLN L 38 -1 N TRP L 35 O MET L 48 SHEET 4 C 6 ILE L 85 GLN L 90 -1 O ILE L 85 N GLN L 38 SHEET 5 C 6 THR L 102 ILE L 106 -1 O THR L 102 N TYR L 86 SHEET 6 C 6 SER L 10 VAL L 13 1 O LEU L 11 N GLU L 105 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 VAL L 132 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 D 4 TYR L 173 LEU L 179 -1 N TYR L 173 O PHE L 139 SHEET 4 D 4 VAL L 159 TRP L 163 -1 O LEU L 160 N THR L 178 SHEET 1 E 4 GLU L 154 ARG L 155 0 SHEET 2 E 4 ASN L 145 LYS L 149 -1 O TRP L 148 N ARG L 155 SHEET 3 E 4 SER L 191 THR L 197 -1 O THR L 193 N LYS L 149 SHEET 4 E 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SHEET 1 F 4 GLN H 3 GLN H 6 0 SHEET 2 F 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 F 4 THR H 77 ILE H 82 -1 N ALA H 78 O CYS H 22 SHEET 4 F 4 PHE H 67 LEU H 71 -1 N ALA H 68 O GLU H 81 SHEET 1 G 4 PRO H 57 TYR H 59 0 SHEET 2 G 4 LEU H 45 ASN H 52 -1 O TRP H 50 N THR H 58 SHEET 3 G 4 GLY H 33 GLU H 39 -1 O VAL H 34 N ILE H 51 SHEET 4 G 4 ALA H 88 GLY H 95 -1 O THR H 89 N GLU H 39 SHEET 1 H 6 PRO H 57 TYR H 59 0 SHEET 2 H 6 LEU H 45 ASN H 52 -1 O TRP H 50 N THR H 58 SHEET 3 H 6 GLY H 33 GLU H 39 -1 O VAL H 34 N ILE H 51 SHEET 4 H 6 ALA H 88 GLY H 95 -1 O THR H 89 N GLU H 39 SHEET 5 H 6 THR H 107 VAL H 111 -1 O THR H 107 N TYR H 90 SHEET 6 H 6 GLU H 10 LYS H 12 1 O GLU H 10 N THR H 110 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 MET H 137 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 I 4 LEU H 184 PRO H 194 -1 N TYR H 185 O TYR H 147 SHEET 4 I 4 HIS H 172 GLN H 179 -1 N HIS H 172 O SER H 190 SHEET 1 J 3 THR H 153 TRP H 157 0 SHEET 2 J 3 THR H 207 HIS H 212 -1 N ASN H 209 O THR H 156 SHEET 3 J 3 THR H 217 LYS H 222 -1 O THR H 217 N HIS H 212 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.00 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 3 CYS H 22 CYS H 92 1555 1555 1.98 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.00 CISPEP 1 ILE L 7 PRO L 8 0 4.24 CISPEP 2 VAL L 94 PRO L 95 0 26.16 CISPEP 3 TYR L 140 PRO L 141 0 -3.70 CISPEP 4 PHE H 148 PRO H 149 0 -2.44 CISPEP 5 GLU H 150 PRO H 151 0 -4.37 SITE 1 AC1 2 TRP H 100 TYR L 32 SITE 1 AC2 2 ASN H 35 TRP H 100 CRYST1 134.760 134.760 124.210 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007421 0.004284 0.000000 0.00000 SCALE2 0.000000 0.008569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008051 0.00000