HEADER TRANSCRIPTIONAL STIMULATOR 16-MAY-96 1DCP TITLE DCOH, A BIFUNCTIONAL PROTEIN-BINDING TRANSCRIPTIONAL COACTIVATOR, TITLE 2 COMPLEXED WITH BIOPTERIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DCOH; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 SYNONYM: DIMERIZATION COFACTOR OF HEPATOCYTE NUCLEAR FACTOR 1-ALPHA, COMPND 5 HNF-1, PHS, PHENYLALANINE HYDROXYLASE STIMULATOR; COMPND 6 EC: 4.2.1.96; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-2T; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T (PHARMACIA); SOURCE 10 OTHER_DETAILS: GST-FUSION KEYWDS TRANSCRIPTIONAL STIMULATOR, DIMERIZATION COFACTOR, DEHYDRATASE, 4A- KEYWDS 2 CARBINOLAMINE DEHYDRATASE, TRANSREGULATOR OF HOMEODOMAIN PROTEINS EXPDTA X-RAY DIFFRACTION AUTHOR J.D.CRONK,J.A.ENDRIZZI,T.ALBER REVDAT 3 07-FEB-24 1DCP 1 REMARK REVDAT 2 24-FEB-09 1DCP 1 VERSN REVDAT 1 07-DEC-96 1DCP 0 JRNL AUTH J.D.CRONK,J.A.ENDRIZZI,T.ALBER JRNL TITL HIGH-RESOLUTION STRUCTURES OF THE BIFUNCTIONAL ENZYME AND JRNL TITL 2 TRANSCRIPTIONAL COACTIVATOR DCOH AND ITS COMPLEX WITH A JRNL TITL 3 PRODUCT ANALOGUE. JRNL REF PROTEIN SCI. V. 5 1963 1996 JRNL REFN ISSN 0961-8368 JRNL PMID 8897596 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.A.ENDRIZZI,J.D.CRONK,W.WANG,G.R.CRABTREE,T.ALBER REMARK 1 TITL CRYSTAL STRUCTURE OF DCOH, A BIFUNCTIONAL, PROTEIN-BINDING REMARK 1 TITL 2 TRANSCRIPTIONAL COACTIVATOR REMARK 1 REF SCIENCE V. 268 556 1995 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 45971 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1800 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6487 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.012 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 2.300 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.008 ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : 0.011 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : 0.026 ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : TNT RESTRAINTS REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CORRELATED B-VALUE REFINEMENT WAS REMARK 3 CARRIED OUT WITH TNT. MEAN B VALUE 14.8 ANGSTROMS**2 FINAL RMS REMARK 3 COORD. SHIFT 0.01 ANGSTROMS REMARK 4 REMARK 4 1DCP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-95 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : R-AXIS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ROOM TEMPERATURE, 1.7M AMSO4, 0.1M REMARK 280 HEPES, PH 7.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 130.78000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.39000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.39000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 130.78000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 LYS A 4 REMARK 465 ALA A 5 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 LYS B 4 REMARK 465 ALA B 5 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 LYS C 4 REMARK 465 ALA C 5 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 3 REMARK 465 LYS D 4 REMARK 465 ALA D 5 REMARK 465 MET E 1 REMARK 465 ALA E 2 REMARK 465 GLY E 3 REMARK 465 LYS E 4 REMARK 465 ALA E 5 REMARK 465 MET F 1 REMARK 465 ALA F 2 REMARK 465 GLY F 3 REMARK 465 LYS F 4 REMARK 465 ALA F 5 REMARK 465 MET G 1 REMARK 465 ALA G 2 REMARK 465 GLY G 3 REMARK 465 LYS G 4 REMARK 465 ALA G 5 REMARK 465 MET H 1 REMARK 465 ALA H 2 REMARK 465 GLY H 3 REMARK 465 LYS H 4 REMARK 465 ALA H 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 15 CG CD OE1 NE2 REMARK 470 GLN B 15 CG CD OE1 NE2 REMARK 470 ASP D 14 CG OD1 OD2 REMARK 470 HIS E 6 CG ND1 CD2 CE1 NE2 REMARK 470 GLU E 11 CG CD OE1 OE2 REMARK 470 ASP F 14 CG OD1 OD2 REMARK 470 HIS G 6 CG ND1 CD2 CE1 NE2 REMARK 470 HIS H 6 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD GLU C 29 O HOH F 124 2664 0.44 REMARK 500 OE2 GLU C 29 O HOH F 124 2664 0.86 REMARK 500 OE1 GLU C 29 O HOH F 124 2664 1.50 REMARK 500 CG GLU C 29 O HOH F 124 2664 1.83 REMARK 500 O ASN H 68 O HOH H 138 4556 2.11 REMARK 500 O TRP G 66 O HOH H 138 4556 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 11 CD GLU A 11 OE1 0.067 REMARK 500 GLU A 81 CD GLU A 81 OE2 0.069 REMARK 500 GLU A 87 CD GLU A 87 OE2 0.070 REMARK 500 GLU B 11 CD GLU B 11 OE2 0.073 REMARK 500 GLU B 65 CD GLU B 65 OE1 0.081 REMARK 500 GLU C 65 CD GLU C 65 OE1 0.073 REMARK 500 GLU C 97 CD GLU C 97 OE2 0.082 REMARK 500 GLU D 11 CD GLU D 11 OE2 0.070 REMARK 500 GLU D 29 CD GLU D 29 OE2 0.076 REMARK 500 GLU D 65 CD GLU D 65 OE1 0.066 REMARK 500 GLU D 87 CD GLU D 87 OE1 0.069 REMARK 500 GLU D 97 CD GLU D 97 OE1 0.070 REMARK 500 GLU E 29 CD GLU E 29 OE2 0.069 REMARK 500 GLU E 58 CD GLU E 58 OE2 0.068 REMARK 500 GLU E 81 CD GLU E 81 OE2 0.071 REMARK 500 GLU F 81 CD GLU F 81 OE2 0.076 REMARK 500 GLU G 27 CD GLU G 27 OE2 0.071 REMARK 500 GLU G 81 CD GLU G 81 OE2 0.071 REMARK 500 GLU G 97 CD GLU G 97 OE2 0.066 REMARK 500 GLU H 11 CD GLU H 11 OE2 0.071 REMARK 500 GLU H 29 CD GLU H 29 OE2 0.069 REMARK 500 GLU H 58 CD GLU H 58 OE2 0.074 REMARK 500 GLU H 87 CD GLU H 87 OE2 0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 32 CB - CG - OD1 ANGL. DEV. = -7.2 DEGREES REMARK 500 ASP A 42 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 42 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 52 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 61 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 61 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 VAL A 73 CA - CB - CG2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP A 89 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 21 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 21 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP B 32 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP B 42 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 42 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG B 52 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP B 61 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP B 61 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ASP B 89 CB - CG - OD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 ASP B 89 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP C 14 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG C 21 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG C 31 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP C 32 CB - CG - OD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 PHE C 35 CB - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP C 42 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG C 52 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 52 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP C 61 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP C 61 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG C 88 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP C 89 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ASP C 89 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG D 13 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP D 42 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP D 89 CB - CG - OD1 ANGL. DEV. = -8.4 DEGREES REMARK 500 ASP D 89 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG E 21 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG E 21 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG E 31 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP E 32 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP E 32 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 TYR E 70 CB - CG - CD1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP E 89 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP F 32 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG F 52 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU F 60 CB - CA - C ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP F 61 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG G 13 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ASP G 32 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ASP G 42 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 61 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 7 84.52 -54.34 REMARK 500 LEU A 8 134.22 -15.34 REMARK 500 LYS A 36 139.05 -173.75 REMARK 500 ASP A 61 43.30 78.51 REMARK 500 TYR A 70 -105.81 56.03 REMARK 500 SER A 102 28.31 -69.49 REMARK 500 LEU B 8 109.82 -55.46 REMARK 500 LYS B 36 140.13 -170.29 REMARK 500 TYR B 70 -111.85 44.31 REMARK 500 GLU B 81 -84.97 -63.22 REMARK 500 CYS B 82 -30.62 -33.32 REMARK 500 MET B 103 -77.34 -59.93 REMARK 500 TYR C 70 -109.67 43.23 REMARK 500 ALA C 83 36.47 72.98 REMARK 500 ARG D 7 61.28 20.76 REMARK 500 LEU D 8 126.29 -22.89 REMARK 500 SER D 9 -116.89 -70.08 REMARK 500 ALA D 10 -110.84 -106.78 REMARK 500 GLU D 11 -59.58 -6.02 REMARK 500 ASP D 14 47.61 -78.03 REMARK 500 GLN D 15 -43.99 -155.96 REMARK 500 TYR D 70 -114.68 45.72 REMARK 500 ILE D 90 -70.13 -49.24 REMARK 500 ASP E 14 -28.23 -38.63 REMARK 500 TYR E 70 -106.72 64.81 REMARK 500 GLU E 81 -70.81 -58.35 REMARK 500 ALA E 83 51.50 39.38 REMARK 500 SER E 102 70.10 -69.41 REMARK 500 MET E 103 -49.62 -170.09 REMARK 500 ARG F 7 86.69 76.93 REMARK 500 TYR F 70 -114.28 49.05 REMARK 500 GLU F 81 -68.00 -27.53 REMARK 500 LEU G 8 153.63 -48.32 REMARK 500 TYR G 70 -107.71 51.63 REMARK 500 ALA G 83 -29.68 138.80 REMARK 500 MET G 103 -73.61 -104.94 REMARK 500 LYS H 36 132.86 -176.72 REMARK 500 TYR H 70 -108.78 52.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBI A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBI B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBI C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBI D 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBI E 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBI F 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBI G 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HBI H 105 DBREF 1DCP A 2 104 UNP P61459 PHS_RAT 1 103 DBREF 1DCP B 2 104 UNP P61459 PHS_RAT 1 103 DBREF 1DCP C 2 104 UNP P61459 PHS_RAT 1 103 DBREF 1DCP D 2 104 UNP P61459 PHS_RAT 1 103 DBREF 1DCP E 2 104 UNP P61459 PHS_RAT 1 103 DBREF 1DCP F 2 104 UNP P61459 PHS_RAT 1 103 DBREF 1DCP G 2 104 UNP P61459 PHS_RAT 1 103 DBREF 1DCP H 2 104 UNP P61459 PHS_RAT 1 103 SEQRES 1 A 104 MET ALA GLY LYS ALA HIS ARG LEU SER ALA GLU GLU ARG SEQRES 2 A 104 ASP GLN LEU LEU PRO ASN LEU ARG ALA VAL GLY TRP ASN SEQRES 3 A 104 GLU LEU GLU GLY ARG ASP ALA ILE PHE LYS GLN PHE HIS SEQRES 4 A 104 PHE LYS ASP PHE ASN ARG ALA PHE GLY PHE MET THR ARG SEQRES 5 A 104 VAL ALA LEU GLN ALA GLU LYS LEU ASP HIS HIS PRO GLU SEQRES 6 A 104 TRP PHE ASN VAL TYR ASN LYS VAL HIS ILE THR LEU SER SEQRES 7 A 104 THR HIS GLU CYS ALA GLY LEU SER GLU ARG ASP ILE ASN SEQRES 8 A 104 LEU ALA SER PHE ILE GLU GLN VAL ALA VAL SER MET THR SEQRES 1 B 104 MET ALA GLY LYS ALA HIS ARG LEU SER ALA GLU GLU ARG SEQRES 2 B 104 ASP GLN LEU LEU PRO ASN LEU ARG ALA VAL GLY TRP ASN SEQRES 3 B 104 GLU LEU GLU GLY ARG ASP ALA ILE PHE LYS GLN PHE HIS SEQRES 4 B 104 PHE LYS ASP PHE ASN ARG ALA PHE GLY PHE MET THR ARG SEQRES 5 B 104 VAL ALA LEU GLN ALA GLU LYS LEU ASP HIS HIS PRO GLU SEQRES 6 B 104 TRP PHE ASN VAL TYR ASN LYS VAL HIS ILE THR LEU SER SEQRES 7 B 104 THR HIS GLU CYS ALA GLY LEU SER GLU ARG ASP ILE ASN SEQRES 8 B 104 LEU ALA SER PHE ILE GLU GLN VAL ALA VAL SER MET THR SEQRES 1 C 104 MET ALA GLY LYS ALA HIS ARG LEU SER ALA GLU GLU ARG SEQRES 2 C 104 ASP GLN LEU LEU PRO ASN LEU ARG ALA VAL GLY TRP ASN SEQRES 3 C 104 GLU LEU GLU GLY ARG ASP ALA ILE PHE LYS GLN PHE HIS SEQRES 4 C 104 PHE LYS ASP PHE ASN ARG ALA PHE GLY PHE MET THR ARG SEQRES 5 C 104 VAL ALA LEU GLN ALA GLU LYS LEU ASP HIS HIS PRO GLU SEQRES 6 C 104 TRP PHE ASN VAL TYR ASN LYS VAL HIS ILE THR LEU SER SEQRES 7 C 104 THR HIS GLU CYS ALA GLY LEU SER GLU ARG ASP ILE ASN SEQRES 8 C 104 LEU ALA SER PHE ILE GLU GLN VAL ALA VAL SER MET THR SEQRES 1 D 104 MET ALA GLY LYS ALA HIS ARG LEU SER ALA GLU GLU ARG SEQRES 2 D 104 ASP GLN LEU LEU PRO ASN LEU ARG ALA VAL GLY TRP ASN SEQRES 3 D 104 GLU LEU GLU GLY ARG ASP ALA ILE PHE LYS GLN PHE HIS SEQRES 4 D 104 PHE LYS ASP PHE ASN ARG ALA PHE GLY PHE MET THR ARG SEQRES 5 D 104 VAL ALA LEU GLN ALA GLU LYS LEU ASP HIS HIS PRO GLU SEQRES 6 D 104 TRP PHE ASN VAL TYR ASN LYS VAL HIS ILE THR LEU SER SEQRES 7 D 104 THR HIS GLU CYS ALA GLY LEU SER GLU ARG ASP ILE ASN SEQRES 8 D 104 LEU ALA SER PHE ILE GLU GLN VAL ALA VAL SER MET THR SEQRES 1 E 104 MET ALA GLY LYS ALA HIS ARG LEU SER ALA GLU GLU ARG SEQRES 2 E 104 ASP GLN LEU LEU PRO ASN LEU ARG ALA VAL GLY TRP ASN SEQRES 3 E 104 GLU LEU GLU GLY ARG ASP ALA ILE PHE LYS GLN PHE HIS SEQRES 4 E 104 PHE LYS ASP PHE ASN ARG ALA PHE GLY PHE MET THR ARG SEQRES 5 E 104 VAL ALA LEU GLN ALA GLU LYS LEU ASP HIS HIS PRO GLU SEQRES 6 E 104 TRP PHE ASN VAL TYR ASN LYS VAL HIS ILE THR LEU SER SEQRES 7 E 104 THR HIS GLU CYS ALA GLY LEU SER GLU ARG ASP ILE ASN SEQRES 8 E 104 LEU ALA SER PHE ILE GLU GLN VAL ALA VAL SER MET THR SEQRES 1 F 104 MET ALA GLY LYS ALA HIS ARG LEU SER ALA GLU GLU ARG SEQRES 2 F 104 ASP GLN LEU LEU PRO ASN LEU ARG ALA VAL GLY TRP ASN SEQRES 3 F 104 GLU LEU GLU GLY ARG ASP ALA ILE PHE LYS GLN PHE HIS SEQRES 4 F 104 PHE LYS ASP PHE ASN ARG ALA PHE GLY PHE MET THR ARG SEQRES 5 F 104 VAL ALA LEU GLN ALA GLU LYS LEU ASP HIS HIS PRO GLU SEQRES 6 F 104 TRP PHE ASN VAL TYR ASN LYS VAL HIS ILE THR LEU SER SEQRES 7 F 104 THR HIS GLU CYS ALA GLY LEU SER GLU ARG ASP ILE ASN SEQRES 8 F 104 LEU ALA SER PHE ILE GLU GLN VAL ALA VAL SER MET THR SEQRES 1 G 104 MET ALA GLY LYS ALA HIS ARG LEU SER ALA GLU GLU ARG SEQRES 2 G 104 ASP GLN LEU LEU PRO ASN LEU ARG ALA VAL GLY TRP ASN SEQRES 3 G 104 GLU LEU GLU GLY ARG ASP ALA ILE PHE LYS GLN PHE HIS SEQRES 4 G 104 PHE LYS ASP PHE ASN ARG ALA PHE GLY PHE MET THR ARG SEQRES 5 G 104 VAL ALA LEU GLN ALA GLU LYS LEU ASP HIS HIS PRO GLU SEQRES 6 G 104 TRP PHE ASN VAL TYR ASN LYS VAL HIS ILE THR LEU SER SEQRES 7 G 104 THR HIS GLU CYS ALA GLY LEU SER GLU ARG ASP ILE ASN SEQRES 8 G 104 LEU ALA SER PHE ILE GLU GLN VAL ALA VAL SER MET THR SEQRES 1 H 104 MET ALA GLY LYS ALA HIS ARG LEU SER ALA GLU GLU ARG SEQRES 2 H 104 ASP GLN LEU LEU PRO ASN LEU ARG ALA VAL GLY TRP ASN SEQRES 3 H 104 GLU LEU GLU GLY ARG ASP ALA ILE PHE LYS GLN PHE HIS SEQRES 4 H 104 PHE LYS ASP PHE ASN ARG ALA PHE GLY PHE MET THR ARG SEQRES 5 H 104 VAL ALA LEU GLN ALA GLU LYS LEU ASP HIS HIS PRO GLU SEQRES 6 H 104 TRP PHE ASN VAL TYR ASN LYS VAL HIS ILE THR LEU SER SEQRES 7 H 104 THR HIS GLU CYS ALA GLY LEU SER GLU ARG ASP ILE ASN SEQRES 8 H 104 LEU ALA SER PHE ILE GLU GLN VAL ALA VAL SER MET THR HET HBI A 105 17 HET HBI B 105 17 HET HBI C 105 17 HET HBI D 105 17 HET HBI E 105 17 HET HBI F 105 17 HET HBI G 105 17 HET HBI H 105 17 HETNAM HBI 7,8-DIHYDROBIOPTERIN FORMUL 9 HBI 8(C9 H13 N5 O3) FORMUL 17 HOH *258(H2 O) HELIX 1 1 ALA A 10 VAL A 23 1 14 HELIX 2 2 PHE A 43 LEU A 60 1 18 HELIX 3 3 GLU A 87 SER A 102 1 16 HELIX 4 4 ALA B 10 VAL B 23 1 14 HELIX 5 5 PHE B 43 LEU B 60 1 18 HELIX 6 6 GLU B 87 MET B 103 1 17 HELIX 7 7 ALA C 10 VAL C 23 1 14 HELIX 8 8 PHE C 43 LYS C 59 1 17 HELIX 9 9 GLU C 87 SER C 102 1 16 HELIX 10 10 ALA D 10 VAL D 23 1 14 HELIX 11 11 PHE D 43 LEU D 60 1 18 HELIX 12 12 GLU D 87 MET D 103 1 17 HELIX 13 13 ALA E 10 ARG E 21 1 12 HELIX 14 14 PHE E 43 LEU E 60 1 18 HELIX 15 15 GLU E 87 VAL E 101 1 15 HELIX 16 16 ALA F 10 VAL F 23 1 14 HELIX 17 17 PHE F 43 LEU F 60 1 18 HELIX 18 18 GLU F 87 SER F 102 1 16 HELIX 19 19 ALA G 10 VAL G 23 1 14 HELIX 20 20 PHE G 43 LEU G 60 1 18 HELIX 21 21 GLU G 87 MET G 103 1 17 HELIX 22 22 ALA H 10 VAL H 23 1 14 HELIX 23 23 PHE H 43 LEU H 60 1 18 HELIX 24 24 GLU H 87 SER H 102 1 16 SHEET 1 A 6 ILE A 34 HIS A 39 0 SHEET 2 A 6 LYS A 72 LEU A 77 -1 N LEU A 77 O ILE A 34 SHEET 3 A 6 GLU A 65 ASN A 68 -1 N PHE A 67 O HIS A 74 SHEET 4 A 6 GLU B 65 ASN B 68 -1 N ASN B 68 O TRP A 66 SHEET 5 A 6 LYS B 72 LEU B 77 -1 N THR B 76 O GLU B 65 SHEET 6 A 6 ILE B 34 HIS B 39 -1 N PHE B 38 O VAL B 73 SHEET 1 B 6 ILE C 34 HIS C 39 0 SHEET 2 B 6 LYS C 72 LEU C 77 -1 N LEU C 77 O ILE C 34 SHEET 3 B 6 GLU C 65 ASN C 68 -1 N PHE C 67 O HIS C 74 SHEET 4 B 6 GLU D 65 ASN D 68 -1 N ASN D 68 O TRP C 66 SHEET 5 B 6 LYS D 72 LEU D 77 -1 N THR D 76 O GLU D 65 SHEET 6 B 6 ILE D 34 HIS D 39 -1 N PHE D 38 O VAL D 73 SHEET 1 C 6 ILE E 34 HIS E 39 0 SHEET 2 C 6 LYS E 72 LEU E 77 -1 N LEU E 77 O ILE E 34 SHEET 3 C 6 GLU E 65 ASN E 68 -1 N PHE E 67 O HIS E 74 SHEET 4 C 6 GLU F 65 ASN F 68 -1 N ASN F 68 O TRP E 66 SHEET 5 C 6 LYS F 72 LEU F 77 -1 N THR F 76 O GLU F 65 SHEET 6 C 6 ILE F 34 HIS F 39 -1 N PHE F 38 O VAL F 73 SHEET 1 D 6 ILE G 34 HIS G 39 0 SHEET 2 D 6 LYS G 72 LEU G 77 -1 N LEU G 77 O ILE G 34 SHEET 3 D 6 GLU G 65 ASN G 68 -1 N PHE G 67 O HIS G 74 SHEET 4 D 6 GLU H 65 ASN H 68 -1 N ASN H 68 O TRP G 66 SHEET 5 D 6 LYS H 72 LEU H 77 -1 N THR H 76 O GLU H 65 SHEET 6 D 6 ILE H 34 HIS H 39 -1 N PHE H 38 O VAL H 73 SITE 1 AC1 9 ASP A 61 HIS A 62 HIS A 63 SER A 78 SITE 2 AC1 9 THR A 79 HIS A 80 GLU A 81 HOH A 122 SITE 3 AC1 9 HOH A 136 SITE 1 AC2 6 ASP B 61 HIS B 62 HIS B 63 SER B 78 SITE 2 AC2 6 HIS B 80 GLU B 81 SITE 1 AC3 4 ASP C 61 HIS C 62 HIS C 63 SER C 78 SITE 1 AC4 7 ASP D 61 HIS D 62 HIS D 63 SER D 78 SITE 2 AC4 7 THR D 79 HIS D 80 GLU D 81 SITE 1 AC5 7 ASP E 61 HIS E 62 HIS E 63 SER E 78 SITE 2 AC5 7 THR E 79 HIS E 80 GLU E 81 SITE 1 AC6 8 ASP F 61 HIS F 62 HIS F 63 SER F 78 SITE 2 AC6 8 THR F 79 HIS F 80 GLU F 81 HOH F 130 SITE 1 AC7 9 ASP G 61 HIS G 62 HIS G 63 SER G 78 SITE 2 AC7 9 THR G 79 HIS G 80 GLU G 81 HOH G 106 SITE 3 AC7 9 HOH G 128 SITE 1 AC8 7 ASP H 61 HIS H 62 HIS H 63 SER H 78 SITE 2 AC8 7 THR H 79 HIS H 80 GLU H 81 CRYST1 105.700 105.700 196.170 90.00 90.00 120.00 P 32 2 1 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009461 0.005462 0.000000 0.00000 SCALE2 0.000000 0.010924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005098 0.00000