data_1DCR # _entry.id 1DCR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DCR pdb_00001dcr 10.2210/pdb1dcr/pdb NDB BD0027 ? ? RCSB RCSB009974 ? ? WWPDB D_1000009974 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1D9R . unspecified PDB 1D8X . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DCR _pdbx_database_status.recvd_initial_deposition_date 1999-11-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.-G.' 1 'Robinson, H.' 2 'Sanishvili, R.' 3 'Joachimiak, A.' 4 'Wang, A.H.-J.' 5 # _citation.id primary _citation.title 'Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution.' _citation.journal_abbrev Biochemistry _citation.journal_volume 38 _citation.page_first 16452 _citation.page_last 16460 _citation.year 1999 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10600106 _citation.pdbx_database_id_DOI 10.1021/bi9914614 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Robinson, H.' 2 ? primary 'Sanishvili, R.' 3 ? primary 'Joachimiak, A.' 4 ? primary 'Wang, A.H.' 5 ? # _cell.entry_id 1DCR _cell.length_a 20.950 _cell.length_b 61.860 _cell.length_c 68.490 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DCR _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*CP*GP*AP*AP*(BRU)P*GP*AP*GP*G)-3'" 3158.913 2 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 87 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DA)(DA)(BRU)(DG)(DA)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGAAUGAGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 BRU n 1 7 DG n 1 8 DA n 1 9 DG n 1 10 DG n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DCR _struct_ref.pdbx_db_accession 1DCR _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1DCR A 1 ? 10 ? 1DCR 1 ? 10 ? 1 10 2 1 1DCR B 1 ? 10 ? 1DCR 11 ? 20 ? 11 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # _exptl.entry_id 1DCR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.76 _exptl_crystal.density_percent_sol 29.96 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'MPD, MGCL2, TRIS, SPERMINE, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 SPERMINE ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 TRIS ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1996-06-17 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DCR _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.60 _reflns.number_obs 5771 _reflns.number_all 5771 _reflns.percent_possible_obs 94.8 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.2 _reflns.B_iso_Wilson_estimate 32.7 _reflns.pdbx_redundancy 2.61 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 93.7 _reflns_shell.Rmerge_I_obs 0.445 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.80 _reflns_shell.pdbx_redundancy 2.10 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DCR _refine.ls_number_reflns_obs 5409 _refine.ls_number_reflns_all 5771 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 98.4 _refine.ls_R_factor_obs 0.191 _refine.ls_R_factor_all 0.196 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.266 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 291 _refine.ls_number_parameters 2055 _refine.ls_number_restraints 1837 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'SHELX-97 OPTIONS SWAT' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'SHELX-97 OPTIONS HOPE' _refine.pdbx_starting_model 'PDB STRUCTURE 1D9R' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 412 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 77 _refine_hist.number_atoms_total 523 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.067 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.072 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.066 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1DCR _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.192 _pdbx_refine.R_factor_obs_4sig_cutoff 0.187 _pdbx_refine.free_R_factor_4sig_cutoff 0.261 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 278 _pdbx_refine.number_reflns_obs_4sig_cutoff 5409 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1DCR _struct.title 'CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DCR _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'TANDEM GA BASE PAIRS, GA MISMATCH, DEOXYRIBONUCLEIC ACID, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 3 ? H N N 5 ? I N N 5 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 5 "O3'" ? ? ? 1_555 A BRU 6 P ? ? A DA 5 A BRU 6 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? A BRU 6 "O3'" ? ? ? 1_555 A DG 7 P ? ? A BRU 6 A DG 7 1_555 ? ? ? ? ? ? ? 1.576 ? ? covale3 covale both ? B DA 5 "O3'" ? ? ? 1_555 B BRU 6 P ? ? B DA 15 B BRU 16 1_555 ? ? ? ? ? ? ? 1.619 ? ? covale4 covale both ? B BRU 6 "O3'" ? ? ? 1_555 B DG 7 P ? ? B BRU 16 B DG 17 1_555 ? ? ? ? ? ? ? 1.597 ? ? metalc1 metalc ? ? A DG 9 N7 ? ? ? 1_555 E MG . MG ? ? A DG 9 A MG 22 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc2 metalc ? ? A DG 10 OP1 ? ? ? 1_555 D MG . MG ? ? A DG 10 A MG 21 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc3 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 21 A HOH 1078 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 21 A HOH 1079 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 21 A HOH 1080 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 21 A HOH 1081 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc7 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 21 A HOH 1082 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 22 A HOH 1083 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 22 A HOH 1084 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 22 A HOH 1085 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 22 A HOH 1086 1_555 ? ? ? ? ? ? ? 2.067 ? ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 22 A HOH 1087 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc13 metalc ? ? B BRU 6 OP1 ? ? ? 1_555 F NA . NA ? ? B BRU 16 B NA 25 1_555 ? ? ? ? ? ? ? 4.103 ? ? metalc14 metalc ? ? B BRU 6 "O5'" ? ? ? 1_555 F NA . NA ? ? B BRU 16 B NA 25 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc15 metalc ? ? B BRU 6 OP2 ? ? ? 1_555 F NA . NA ? ? B BRU 16 B NA 25 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc16 metalc ? ? B DG 10 OP1 ? ? ? 1_555 G MG . MG ? ? B DG 20 B MG 23 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc17 metalc ? ? B DG 10 OP1 ? ? ? 3_555 G MG . MG ? ? B DG 20 B MG 23 1_555 ? ? ? ? ? ? ? 2.028 ? ? metalc18 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 23 B HOH 1088 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc19 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 23 B HOH 1088 3_555 ? ? ? ? ? ? ? 2.057 ? ? metalc20 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 23 B HOH 1089 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc21 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 23 B HOH 1089 3_555 ? ? ? ? ? ? ? 2.056 ? ? metalc22 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 23 B HOH 1090 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc23 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 23 B HOH 1090 3_555 ? ? ? ? ? ? ? 2.062 ? ? metalc24 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 23 B HOH 1091 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc25 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? B MG 23 B HOH 1091 3_555 ? ? ? ? ? ? ? 2.062 ? ? metalc26 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 25 B HOH 1014 1_555 ? ? ? ? ? ? ? 2.908 ? ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 2 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DA 8 N7 ? ? A DG 3 B DA 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N3 ? ? ? 1_555 B DA 8 N6 ? ? A DG 3 B DA 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog6 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DG 7 N3 ? ? A DA 4 B DG 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog7 hydrog ? ? A DA 4 N7 ? ? ? 1_555 B DG 7 N2 ? ? A DA 4 B DG 17 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B BRU 6 N3 ? ? A DA 5 B BRU 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B BRU 6 O4 ? ? A DA 5 B BRU 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A BRU 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? A BRU 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A BRU 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? A BRU 6 B DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DA 4 N7 ? ? A DG 7 B DA 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog13 hydrog ? ? A DG 7 N3 ? ? ? 1_555 B DA 4 N6 ? ? A DG 7 B DA 14 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog14 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DG 3 N3 ? ? A DA 8 B DG 13 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog15 hydrog ? ? A DA 8 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DA 8 B DG 13 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 9 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SPM 24 ? 10 'BINDING SITE FOR RESIDUE SPM A 24' AC2 Software B NA 25 ? 3 'BINDING SITE FOR RESIDUE NA B 25' AC3 Software A MG 21 ? 6 'BINDING SITE FOR RESIDUE MG A 21' AC4 Software A MG 22 ? 6 'BINDING SITE FOR RESIDUE MG A 22' AC5 Software B MG 23 ? 10 'BINDING SITE FOR RESIDUE MG B 23' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DG A 7 ? DG A 7 . ? 1_555 ? 2 AC1 10 DG A 7 ? DG A 7 . ? 3_655 ? 3 AC1 10 HOH H . ? HOH A 1069 . ? 1_555 ? 4 AC1 10 HOH H . ? HOH A 1069 . ? 3_655 ? 5 AC1 10 DC B 2 ? DC B 12 . ? 3_655 ? 6 AC1 10 DC B 2 ? DC B 12 . ? 1_555 ? 7 AC1 10 DG B 3 ? DG B 13 . ? 1_555 ? 8 AC1 10 DG B 3 ? DG B 13 . ? 3_655 ? 9 AC1 10 HOH I . ? HOH B 1056 . ? 3_655 ? 10 AC1 10 HOH I . ? HOH B 1056 . ? 1_555 ? 11 AC2 3 DA B 5 ? DA B 15 . ? 1_555 ? 12 AC2 3 BRU B 6 ? BRU B 16 . ? 1_555 ? 13 AC2 3 HOH I . ? HOH B 1014 . ? 1_555 ? 14 AC3 6 DG A 10 ? DG A 10 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH A 1078 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH A 1079 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH A 1080 . ? 1_555 ? 18 AC3 6 HOH H . ? HOH A 1081 . ? 1_555 ? 19 AC3 6 HOH H . ? HOH A 1082 . ? 1_555 ? 20 AC4 6 DG A 9 ? DG A 9 . ? 1_555 ? 21 AC4 6 HOH H . ? HOH A 1083 . ? 1_555 ? 22 AC4 6 HOH H . ? HOH A 1084 . ? 1_555 ? 23 AC4 6 HOH H . ? HOH A 1085 . ? 1_555 ? 24 AC4 6 HOH H . ? HOH A 1086 . ? 1_555 ? 25 AC4 6 HOH H . ? HOH A 1087 . ? 1_555 ? 26 AC5 10 DG B 10 ? DG B 20 . ? 1_555 ? 27 AC5 10 DG B 10 ? DG B 20 . ? 3_555 ? 28 AC5 10 HOH I . ? HOH B 1088 . ? 1_555 ? 29 AC5 10 HOH I . ? HOH B 1088 . ? 3_555 ? 30 AC5 10 HOH I . ? HOH B 1089 . ? 3_555 ? 31 AC5 10 HOH I . ? HOH B 1089 . ? 1_555 ? 32 AC5 10 HOH I . ? HOH B 1090 . ? 1_555 ? 33 AC5 10 HOH I . ? HOH B 1090 . ? 3_555 ? 34 AC5 10 HOH I . ? HOH B 1091 . ? 3_555 ? 35 AC5 10 HOH I . ? HOH B 1091 . ? 1_555 ? # _database_PDB_matrix.entry_id 1DCR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DCR _atom_sites.fract_transf_matrix[1][1] 0.047733 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016166 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014601 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C MG N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 BRU 6 6 6 BRU +U A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DA 8 8 8 DA A A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n B 1 1 DC 1 11 11 DC C B . n B 1 2 DC 2 12 12 DC C B . n B 1 3 DG 3 13 13 DG G B . n B 1 4 DA 4 14 14 DA A B . n B 1 5 DA 5 15 15 DA A B . n B 1 6 BRU 6 16 16 BRU +U B . n B 1 7 DG 7 17 17 DG G B . n B 1 8 DA 8 18 18 DA A B . n B 1 9 DG 9 19 19 DG G B . n B 1 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM 1 24 24 SPM SPM A . D 3 MG 1 21 21 MG MO5 A . E 3 MG 1 22 22 MG MO5 A . F 4 NA 1 25 25 NA NA B . G 3 MG 1 23 23 MG MO4 B . H 5 HOH 1 1004 1004 HOH HOH A . H 5 HOH 2 1005 1005 HOH HOH A . H 5 HOH 3 1006 1006 HOH HOH A . H 5 HOH 4 1011 1011 HOH HOH A . H 5 HOH 5 1012 1012 HOH HOH A . H 5 HOH 6 1013 1013 HOH HOH A . H 5 HOH 7 1015 1015 HOH HOH A . H 5 HOH 8 1017 1017 HOH HOH A . H 5 HOH 9 1018 1018 HOH HOH A . H 5 HOH 10 1021 1021 HOH HOH A . H 5 HOH 11 1023 1023 HOH HOH A . H 5 HOH 12 1026 1026 HOH HOH A . H 5 HOH 13 1030 1030 HOH HOH A . H 5 HOH 14 1031 1031 HOH HOH A . H 5 HOH 15 1034 1034 HOH HOH A . H 5 HOH 16 1036 1036 HOH HOH A . H 5 HOH 17 1037 1037 HOH HOH A . H 5 HOH 18 1038 1038 HOH HOH A . H 5 HOH 19 1041 1041 HOH HOH A . H 5 HOH 20 1042 1042 HOH HOH A . H 5 HOH 21 1045 1045 HOH HOH A . H 5 HOH 22 1046 1046 HOH HOH A . H 5 HOH 23 1048 1048 HOH HOH A . H 5 HOH 24 1050 1050 HOH HOH A . H 5 HOH 25 1051 1051 HOH HOH A . H 5 HOH 26 1052 1052 HOH HOH A . H 5 HOH 27 1054 1054 HOH HOH A . H 5 HOH 28 1055 1055 HOH HOH A . H 5 HOH 29 1058 1058 HOH HOH A . H 5 HOH 30 1059 1059 HOH HOH A . H 5 HOH 31 1060 1060 HOH HOH A . H 5 HOH 32 1061 1061 HOH HOH A . H 5 HOH 33 1063 1063 HOH HOH A . H 5 HOH 34 1064 1064 HOH HOH A . H 5 HOH 35 1065 1065 HOH HOH A . H 5 HOH 36 1069 1069 HOH HOH A . H 5 HOH 37 1072 1072 HOH HOH A . H 5 HOH 38 1073 1073 HOH HOH A . H 5 HOH 39 1074 1074 HOH HOH A . H 5 HOH 40 1075 1075 HOH HOH A . H 5 HOH 41 1076 1076 HOH HOH A . H 5 HOH 42 1077 1077 HOH HOH A . H 5 HOH 43 1078 21 HOH MO5 A . H 5 HOH 44 1079 21 HOH MO5 A . H 5 HOH 45 1080 21 HOH MO5 A . H 5 HOH 46 1081 21 HOH MO5 A . H 5 HOH 47 1082 21 HOH MO5 A . H 5 HOH 48 1083 22 HOH MO5 A . H 5 HOH 49 1084 22 HOH MO5 A . H 5 HOH 50 1085 22 HOH MO5 A . H 5 HOH 51 1086 22 HOH MO5 A . H 5 HOH 52 1087 22 HOH MO5 A . I 5 HOH 1 1001 1001 HOH HOH B . I 5 HOH 2 1003 1003 HOH HOH B . I 5 HOH 3 1007 1007 HOH HOH B . I 5 HOH 4 1008 1008 HOH HOH B . I 5 HOH 5 1009 1009 HOH HOH B . I 5 HOH 6 1010 1010 HOH HOH B . I 5 HOH 7 1014 1014 HOH HOH B . I 5 HOH 8 1016 1016 HOH HOH B . I 5 HOH 9 1019 1019 HOH HOH B . I 5 HOH 10 1020 1020 HOH HOH B . I 5 HOH 11 1022 1022 HOH HOH B . I 5 HOH 12 1024 1024 HOH HOH B . I 5 HOH 13 1025 1025 HOH HOH B . I 5 HOH 14 1027 1027 HOH HOH B . I 5 HOH 15 1028 1028 HOH HOH B . I 5 HOH 16 1032 1032 HOH HOH B . I 5 HOH 17 1033 1033 HOH HOH B . I 5 HOH 18 1039 1039 HOH HOH B . I 5 HOH 19 1040 1040 HOH HOH B . I 5 HOH 20 1043 1043 HOH HOH B . I 5 HOH 21 1044 1044 HOH HOH B . I 5 HOH 22 1047 1047 HOH HOH B . I 5 HOH 23 1049 1049 HOH HOH B . I 5 HOH 24 1053 1053 HOH HOH B . I 5 HOH 25 1056 1056 HOH HOH B . I 5 HOH 26 1062 1062 HOH HOH B . I 5 HOH 27 1066 1066 HOH HOH B . I 5 HOH 28 1067 1067 HOH HOH B . I 5 HOH 29 1068 1068 HOH HOH B . I 5 HOH 30 1070 1070 HOH HOH B . I 5 HOH 31 1071 1071 HOH HOH B . I 5 HOH 32 1088 23 HOH MO4 B . I 5 HOH 33 1089 23 HOH MO4 B . I 5 HOH 34 1090 23 HOH MO4 B . I 5 HOH 35 1091 23 HOH MO4 B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BRU 6 A BRU 6 ? DU ? 2 B BRU 6 B BRU 16 ? DU ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B MG 23 ? G MG . 2 1 A HOH 1042 ? H HOH . 3 1 B HOH 1024 ? I HOH . 4 1 B HOH 1070 ? I HOH . 5 1 B HOH 1090 ? I HOH . 6 1 B HOH 1091 ? I HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 9 ? A DG 9 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1083 ? 1_555 87.2 ? 2 N7 ? A DG 9 ? A DG 9 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1084 ? 1_555 94.5 ? 3 O ? H HOH . ? A HOH 1083 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1084 ? 1_555 178.0 ? 4 N7 ? A DG 9 ? A DG 9 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1085 ? 1_555 84.6 ? 5 O ? H HOH . ? A HOH 1083 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1085 ? 1_555 90.1 ? 6 O ? H HOH . ? A HOH 1084 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1085 ? 1_555 90.9 ? 7 N7 ? A DG 9 ? A DG 9 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1086 ? 1_555 172.8 ? 8 O ? H HOH . ? A HOH 1083 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1086 ? 1_555 89.7 ? 9 O ? H HOH . ? A HOH 1084 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1086 ? 1_555 88.7 ? 10 O ? H HOH . ? A HOH 1085 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1086 ? 1_555 88.9 ? 11 N7 ? A DG 9 ? A DG 9 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1087 ? 1_555 97.0 ? 12 O ? H HOH . ? A HOH 1083 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1087 ? 1_555 90.4 ? 13 O ? H HOH . ? A HOH 1084 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1087 ? 1_555 88.5 ? 14 O ? H HOH . ? A HOH 1085 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1087 ? 1_555 178.3 ? 15 O ? H HOH . ? A HOH 1086 ? 1_555 MG ? E MG . ? A MG 22 ? 1_555 O ? H HOH . ? A HOH 1087 ? 1_555 89.5 ? 16 OP1 ? A DG 10 ? A DG 10 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1078 ? 1_555 93.5 ? 17 OP1 ? A DG 10 ? A DG 10 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1079 ? 1_555 85.2 ? 18 O ? H HOH . ? A HOH 1078 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1079 ? 1_555 178.4 ? 19 OP1 ? A DG 10 ? A DG 10 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1080 ? 1_555 91.8 ? 20 O ? H HOH . ? A HOH 1078 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1080 ? 1_555 88.4 ? 21 O ? H HOH . ? A HOH 1079 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1080 ? 1_555 90.6 ? 22 OP1 ? A DG 10 ? A DG 10 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1081 ? 1_555 175.7 ? 23 O ? H HOH . ? A HOH 1078 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1081 ? 1_555 90.8 ? 24 O ? H HOH . ? A HOH 1079 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1081 ? 1_555 90.6 ? 25 O ? H HOH . ? A HOH 1080 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1081 ? 1_555 88.8 ? 26 OP1 ? A DG 10 ? A DG 10 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1082 ? 1_555 89.6 ? 27 O ? H HOH . ? A HOH 1078 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1082 ? 1_555 90.9 ? 28 O ? H HOH . ? A HOH 1079 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1082 ? 1_555 90.1 ? 29 O ? H HOH . ? A HOH 1080 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1082 ? 1_555 178.5 ? 30 O ? H HOH . ? A HOH 1081 ? 1_555 MG ? D MG . ? A MG 21 ? 1_555 O ? H HOH . ? A HOH 1082 ? 1_555 89.8 ? 31 OP1 ? B BRU 6 ? B BRU 16 ? 1_555 NA ? F NA . ? B NA 25 ? 1_555 "O5'" ? B BRU 6 ? B BRU 16 ? 1_555 35.5 ? 32 OP1 ? B BRU 6 ? B BRU 16 ? 1_555 NA ? F NA . ? B NA 25 ? 1_555 OP2 ? B BRU 6 ? B BRU 16 ? 1_555 33.3 ? 33 "O5'" ? B BRU 6 ? B BRU 16 ? 1_555 NA ? F NA . ? B NA 25 ? 1_555 OP2 ? B BRU 6 ? B BRU 16 ? 1_555 62.1 ? 34 OP1 ? B BRU 6 ? B BRU 16 ? 1_555 NA ? F NA . ? B NA 25 ? 1_555 O ? I HOH . ? B HOH 1014 ? 1_555 140.1 ? 35 "O5'" ? B BRU 6 ? B BRU 16 ? 1_555 NA ? F NA . ? B NA 25 ? 1_555 O ? I HOH . ? B HOH 1014 ? 1_555 126.9 ? 36 OP2 ? B BRU 6 ? B BRU 16 ? 1_555 NA ? F NA . ? B NA 25 ? 1_555 O ? I HOH . ? B HOH 1014 ? 1_555 156.8 ? 37 OP1 ? B DG 10 ? B DG 20 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 OP1 ? B DG 10 ? B DG 20 ? 3_555 175.6 ? 38 OP1 ? B DG 10 ? B DG 20 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1088 ? 1_555 99.4 ? 39 OP1 ? B DG 10 ? B DG 20 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1088 ? 1_555 80.6 ? 40 OP1 ? B DG 10 ? B DG 20 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1088 ? 3_555 80.6 ? 41 OP1 ? B DG 10 ? B DG 20 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1088 ? 3_555 99.4 ? 42 O ? I HOH . ? B HOH 1088 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1088 ? 3_555 179.6 ? 43 OP1 ? B DG 10 ? B DG 20 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1089 ? 1_555 80.6 ? 44 OP1 ? B DG 10 ? B DG 20 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1089 ? 1_555 99.4 ? 45 O ? I HOH . ? B HOH 1088 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1089 ? 1_555 179.6 ? 46 O ? I HOH . ? B HOH 1088 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1089 ? 1_555 0.0 ? 47 OP1 ? B DG 10 ? B DG 20 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1089 ? 3_555 99.4 ? 48 OP1 ? B DG 10 ? B DG 20 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1089 ? 3_555 80.6 ? 49 O ? I HOH . ? B HOH 1088 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1089 ? 3_555 0.0 ? 50 O ? I HOH . ? B HOH 1088 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1089 ? 3_555 179.6 ? 51 O ? I HOH . ? B HOH 1089 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1089 ? 3_555 179.6 ? 52 OP1 ? B DG 10 ? B DG 20 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 1_555 92.2 ? 53 OP1 ? B DG 10 ? B DG 20 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 1_555 92.2 ? 54 O ? I HOH . ? B HOH 1088 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 1_555 90.2 ? 55 O ? I HOH . ? B HOH 1088 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 1_555 90.2 ? 56 O ? I HOH . ? B HOH 1089 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 1_555 90.2 ? 57 O ? I HOH . ? B HOH 1089 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 1_555 90.2 ? 58 OP1 ? B DG 10 ? B DG 20 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 3_555 92.2 ? 59 OP1 ? B DG 10 ? B DG 20 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 3_555 92.2 ? 60 O ? I HOH . ? B HOH 1088 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 3_555 90.2 ? 61 O ? I HOH . ? B HOH 1088 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 3_555 90.2 ? 62 O ? I HOH . ? B HOH 1089 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 3_555 90.2 ? 63 O ? I HOH . ? B HOH 1089 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 3_555 90.2 ? 64 O ? I HOH . ? B HOH 1090 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1090 ? 3_555 0.0 ? 65 OP1 ? B DG 10 ? B DG 20 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 1_555 87.8 ? 66 OP1 ? B DG 10 ? B DG 20 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 1_555 87.8 ? 67 O ? I HOH . ? B HOH 1088 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 1_555 89.8 ? 68 O ? I HOH . ? B HOH 1088 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 1_555 89.8 ? 69 O ? I HOH . ? B HOH 1089 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 1_555 89.8 ? 70 O ? I HOH . ? B HOH 1089 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 1_555 89.8 ? 71 O ? I HOH . ? B HOH 1090 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 1_555 180.0 ? 72 O ? I HOH . ? B HOH 1090 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 1_555 180.0 ? 73 OP1 ? B DG 10 ? B DG 20 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 3_555 87.8 ? 74 OP1 ? B DG 10 ? B DG 20 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 3_555 87.8 ? 75 O ? I HOH . ? B HOH 1088 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 3_555 89.8 ? 76 O ? I HOH . ? B HOH 1088 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 3_555 89.8 ? 77 O ? I HOH . ? B HOH 1089 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 3_555 89.8 ? 78 O ? I HOH . ? B HOH 1089 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 3_555 89.8 ? 79 O ? I HOH . ? B HOH 1090 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 3_555 180.0 ? 80 O ? I HOH . ? B HOH 1090 ? 3_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 3_555 179.9 ? 81 O ? I HOH . ? B HOH 1091 ? 1_555 MG ? G MG . ? B MG 23 ? 1_555 O ? I HOH . ? B HOH 1091 ? 3_555 0.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-11-19 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model 6 5 'Structure model' pdbx_struct_conn_angle 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_conn_type 9 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 25 5 'Structure model' '_pdbx_struct_conn_angle.value' 26 5 'Structure model' '_struct_conn.conn_type_id' 27 5 'Structure model' '_struct_conn.id' 28 5 'Structure model' '_struct_conn.pdbx_dist_value' 29 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 30 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 5 'Structure model' '_struct_conn.ptnr1_symmetry' 38 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 39 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 40 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 41 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 42 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 43 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 44 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 45 5 'Structure model' '_struct_conn.ptnr2_symmetry' 46 5 'Structure model' '_struct_conn_type.id' 47 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 48 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 49 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 SHELXL-97 refinement . ? 2 d*TREK 'data scaling' . ? 3 X-PLOR phasing . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A BRU 6 ? ? "O3'" A BRU 6 ? ? P A DG 7 ? ? 131.25 119.70 11.55 1.20 Y 2 1 "O5'" A DG 7 ? ? P A DG 7 ? ? OP2 A DG 7 ? ? 98.79 105.70 -6.91 0.90 N 3 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 103.56 108.00 -4.44 0.70 N 4 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.84 108.30 4.54 0.30 N 5 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 114.68 108.30 6.38 0.30 N 6 1 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 112.28 108.30 3.98 0.30 N 7 1 C5 B DA 15 ? ? C6 B DA 15 ? ? N1 B DA 15 ? ? 120.75 117.70 3.05 0.50 N 8 1 N1 B DA 18 ? ? C2 B DA 18 ? ? N3 B DA 18 ? ? 124.11 129.30 -5.19 0.50 N 9 1 N1 B DA 18 ? ? C6 B DA 18 ? ? N6 B DA 18 ? ? 123.50 118.60 4.90 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 8 ? ? 0.094 'SIDE CHAIN' 2 1 DC B 11 ? ? 0.087 'SIDE CHAIN' 3 1 DA B 14 ? ? 0.069 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 MG MG MG N N 144 NA NA NA N N 145 SPM N1 N N N 146 SPM C2 C N N 147 SPM C3 C N N 148 SPM C4 C N N 149 SPM N5 N N N 150 SPM C6 C N N 151 SPM C7 C N N 152 SPM C8 C N N 153 SPM C9 C N N 154 SPM N10 N N N 155 SPM C11 C N N 156 SPM C12 C N N 157 SPM C13 C N N 158 SPM N14 N N N 159 SPM HN11 H N N 160 SPM HN12 H N N 161 SPM H21 H N N 162 SPM H22 H N N 163 SPM H31 H N N 164 SPM H32 H N N 165 SPM H41 H N N 166 SPM H42 H N N 167 SPM HN5 H N N 168 SPM H61 H N N 169 SPM H62 H N N 170 SPM H71 H N N 171 SPM H72 H N N 172 SPM H81 H N N 173 SPM H82 H N N 174 SPM H91 H N N 175 SPM H92 H N N 176 SPM HN0 H N N 177 SPM H111 H N N 178 SPM H112 H N N 179 SPM H121 H N N 180 SPM H122 H N N 181 SPM H131 H N N 182 SPM H132 H N N 183 SPM HN41 H N N 184 SPM HN42 H N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 HOH O H1 sing N N 147 HOH O H2 sing N N 148 SPM N1 C2 sing N N 149 SPM N1 HN11 sing N N 150 SPM N1 HN12 sing N N 151 SPM C2 C3 sing N N 152 SPM C2 H21 sing N N 153 SPM C2 H22 sing N N 154 SPM C3 C4 sing N N 155 SPM C3 H31 sing N N 156 SPM C3 H32 sing N N 157 SPM C4 N5 sing N N 158 SPM C4 H41 sing N N 159 SPM C4 H42 sing N N 160 SPM N5 C6 sing N N 161 SPM N5 HN5 sing N N 162 SPM C6 C7 sing N N 163 SPM C6 H61 sing N N 164 SPM C6 H62 sing N N 165 SPM C7 C8 sing N N 166 SPM C7 H71 sing N N 167 SPM C7 H72 sing N N 168 SPM C8 C9 sing N N 169 SPM C8 H81 sing N N 170 SPM C8 H82 sing N N 171 SPM C9 N10 sing N N 172 SPM C9 H91 sing N N 173 SPM C9 H92 sing N N 174 SPM N10 C11 sing N N 175 SPM N10 HN0 sing N N 176 SPM C11 C12 sing N N 177 SPM C11 H111 sing N N 178 SPM C11 H112 sing N N 179 SPM C12 C13 sing N N 180 SPM C12 H121 sing N N 181 SPM C12 H122 sing N N 182 SPM C13 N14 sing N N 183 SPM C13 H131 sing N N 184 SPM C13 H132 sing N N 185 SPM N14 HN41 sing N N 186 SPM N14 HN42 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1DCR 'double helix' 1DCR 'b-form double helix' 1DCR 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 9 1_555 0.162 -0.107 -0.101 -3.185 2.432 -3.243 1 A_DC2:DG19_B A 2 ? B 19 ? 19 1 1 A DG 3 1_555 B DA 8 1_555 6.718 -4.499 0.530 32.112 4.379 -3.230 2 A_DG3:DA18_B A 3 ? B 18 ? 11 9 1 A DA 4 1_555 B DG 7 1_555 -6.564 -4.428 0.543 -34.108 -7.028 4.071 3 A_DA4:DG17_B A 4 ? B 17 ? 11 9 1 A DA 5 1_555 B BRU 6 1_555 0.043 -0.058 -0.209 -1.458 8.583 0.694 4 A_DA5:BRU16_B A 5 ? B 16 ? 20 1 1 A BRU 6 1_555 B DA 5 1_555 0.115 -0.066 0.002 3.541 5.731 -1.053 5 A_BRU6:DA15_B A 6 ? B 15 ? 20 1 1 A DG 7 1_555 B DA 4 1_555 6.552 -4.081 1.122 40.713 -7.007 6.863 6 A_DG7:DA14_B A 7 ? B 14 ? 11 9 1 A DA 8 1_555 B DG 3 1_555 -6.531 -4.146 0.760 -37.797 1.738 5.816 7 A_DA8:DG13_B A 8 ? B 13 ? 11 9 1 A DG 9 1_555 B DC 2 1_555 -0.235 -0.200 -0.193 -2.291 6.023 -5.970 8 A_DG9:DC12_B A 9 ? B 12 ? 19 1 1 A DG 10 1_555 B DC 1 1_555 -0.078 -0.249 0.092 -0.916 -6.397 -5.662 9 A_DG10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 9 1_555 A DG 3 1_555 B DA 8 1_555 0.388 1.687 2.959 -2.238 2.504 62.319 1.524 -0.467 3.004 2.418 2.161 62.400 1 AA_DC2DG3:DA18DG19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A DG 3 1_555 B DA 8 1_555 A DA 4 1_555 B DG 7 1_555 0.440 -1.071 4.946 -4.174 -1.316 -6.975 12.993 -14.479 4.243 9.664 -30.650 -8.233 2 AA_DG3DA4:DG17DA18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A DA 4 1_555 B DG 7 1_555 A DA 5 1_555 B BRU 6 1_555 -0.682 2.105 3.031 1.175 4.830 66.177 1.742 0.668 3.149 4.417 -1.075 66.343 3 AA_DA4DA5:BRU16DG17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A DA 5 1_555 B BRU 6 1_555 A BRU 6 1_555 B DA 5 1_555 0.169 -0.531 3.449 -1.189 -0.295 26.171 -1.088 -0.711 3.443 -0.652 2.625 26.199 4 AA_DA5BRU6:DA15BRU16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A BRU 6 1_555 B DA 5 1_555 A DG 7 1_555 B DA 4 1_555 0.731 1.920 2.991 -2.157 6.187 65.508 1.532 -0.755 3.119 5.703 1.988 65.798 5 AA_BRU6DG7:DA14DA15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A DG 7 1_555 B DA 4 1_555 A DA 8 1_555 B DG 3 1_555 -0.211 -1.274 5.275 3.654 -6.241 -5.008 30.297 11.496 2.190 47.759 27.959 -8.795 6 AA_DG7DA8:DG13DA14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A DA 8 1_555 B DG 3 1_555 A DG 9 1_555 B DC 2 1_555 -0.163 1.962 2.878 1.156 5.975 58.876 1.710 0.218 3.043 6.061 -1.173 59.161 7 AA_DA8DG9:DC12DG13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A DG 9 1_555 B DC 2 1_555 A DG 10 1_555 B DC 1 1_555 -0.752 -0.021 3.506 -5.621 7.162 37.398 -1.002 0.381 3.515 10.971 8.611 38.452 8 AA_DG9DG10:DC11DC12_BB A 9 ? B 12 ? A 10 ? B 11 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 'MAGNESIUM ION' MG 4 'SODIUM ION' NA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1D9R _pdbx_initial_refinement_model.details 'PDB STRUCTURE 1D9R' #