HEADER TRANSFERASE 05-NOV-99 1DCZ TITLE BIOTIN CARBOXYL CARRIER DOMAIN OF TRANSCARBOXYLASE (TC 1.3S) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCARBOXYLASE 1.3S SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROPIONIBACTERIUM FREUDENREICHII SUBSP. SOURCE 3 SHERMANII; SOURCE 4 ORGANISM_TAXID: 1752; SOURCE 5 STRAIN: SUBSP. SHERMANII; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET20B KEYWDS ANTIPARALLEL BETA SHEET, HAMMERHEAD, BIOCYTIN, TRANSFERASE EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR D.V.REDDY,B.C.SHENOY,P.R.CAREY,F.D.SONNICHSEN REVDAT 3 16-FEB-22 1DCZ 1 REMARK REVDAT 2 24-FEB-09 1DCZ 1 VERSN REVDAT 1 10-MAY-00 1DCZ 0 JRNL AUTH D.V.REDDY,B.C.SHENOY,P.R.CAREY,F.D.SONNICHSEN JRNL TITL HIGH RESOLUTION SOLUTION STRUCTURE OF THE 1.3S SUBUNIT OF JRNL TITL 2 TRANSCARBOXYLASE FROM PROPIONIBACTERIUM SHERMANII. JRNL REF BIOCHEMISTRY V. 39 2509 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10704200 JRNL DOI 10.1021/BI9925367 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.V.REDDY,S.ROTHEMUND,B.C.SHENOY,P.R.CAREY,F.D.SONNICHSEN REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF THE ENTIRE 1.3S SUBUNIT OF REMARK 1 TITL 2 TRANSCARBOXYLASE FROM PROPIONIBACTERIUM SHERMANII REMARK 1 REF PROTEIN SCI. V. 7 2156 1998 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.V.REDDY,B.C.SHENOY,P.R.CAREY,F.D.SONNICHSEN REMARK 1 TITL ABSENCE OF OBSERVABLE BIOTIN-PROTEIN INTERACTIONS IN THE REMARK 1 TITL 2 1.3S SUBUNIT OF TRANSCARBOXYLASE: AN NMR STUDY REMARK 1 REF BIOCHEMISTRY V. 36 14676 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 DOI 10.1021/BI971674Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE SGI6X.M4, X-PLOR 3.81 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DG_SUB_EMBED, DGSA, REFINE WITH DIRECT REMARK 3 J-REFINEMENT REMARK 4 REMARK 4 1DCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-99. REMARK 100 THE DEPOSITION ID IS D_1000009980. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 20 REMARK 210 PH : 6.7 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM PROTEIN, N15/C13 LABELED TC REMARK 210 1.3S 1-123, BIOTIN (UNLABELED) REMARK 210 COVALENTLY ATTACHED TO LYS 89; 2 REMARK 210 MM PROTEIN,N15/C13 LABELED, TC REMARK 210 1.3S 1-123, BIOTIN (UNLABELED) REMARK 210 COVALENTLY ATTACHED TO LYS 89; REMARK 210 2MM PROTEIN, N15 LABELED, TC REMARK 210 1.3S 1-123, BIOTIN (UNLABELED) REMARK 210 COVALENTLY ATTACHED TO LYS 89 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; 4D_13C- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP 3.7.3, X-PLOR 3.81 REMARK 210 METHOD USED : DISTANCE GEOMETRY/SIMULATED REMARK 210 ANNEALING HYBRID METHOD REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: REMARK 210 BIOTIN ATTACHED TO LYS 89 WAS OMITTED FROM COORDINATES. RESIDUES 1- REMARK 210 46 APPEARED REMARK 210 UNSTRUCTURED, OMITTED FROM CALCULATIONS AND COORDINATES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 72 101.93 -59.32 REMARK 500 ALA A 78 98.35 -60.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 110 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DD2 RELATED DB: PDB REMARK 900 ENSEMBLE OF 32 STRUCTURES DBREF 1DCZ A 47 123 UNP P02904 BCCP_PROFR 47 123 SEQRES 1 A 77 ALA GLY ALA GLY LYS ALA GLY GLU GLY GLU ILE PRO ALA SEQRES 2 A 77 PRO LEU ALA GLY THR VAL SER LYS ILE LEU VAL LYS GLU SEQRES 3 A 77 GLY ASP THR VAL LYS ALA GLY GLN THR VAL LEU VAL LEU SEQRES 4 A 77 GLU ALA MET LYS MET GLU THR GLU ILE ASN ALA PRO THR SEQRES 5 A 77 ASP GLY LYS VAL GLU LYS VAL LEU VAL LYS GLU ARG ASP SEQRES 6 A 77 ALA VAL GLN GLY GLY GLN GLY LEU ILE LYS ILE GLY SHEET 1 A 4 GLU A 56 PRO A 58 0 SHEET 2 A 4 GLY A 118 ILE A 122 -1 N LEU A 119 O ILE A 57 SHEET 3 A 4 GLY A 100 VAL A 105 -1 N GLU A 103 O LYS A 121 SHEET 4 A 4 THR A 75 VAL A 76 -1 N VAL A 76 O GLY A 100 SHEET 1 B 3 THR A 64 ILE A 68 0 SHEET 2 B 3 THR A 81 ALA A 87 -1 N VAL A 84 O LYS A 67 SHEET 3 B 3 MET A 90 ASN A 95 -1 O MET A 90 N ALA A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000