data_1DDE # _entry.id 1DDE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1DDE RCSB RCSB009992 WWPDB D_1000009992 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1DD9 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DDE _pdbx_database_status.recvd_initial_deposition_date 1999-11-09 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Keck, J.L.' 1 'Roche, D.D.' 2 'Lynch, A.S.' 3 'Berger, J.M.' 4 # _citation.id primary _citation.title 'Structure of the RNA polymerase domain of E. coli primase.' _citation.journal_abbrev Science _citation.journal_volume 287 _citation.page_first 2482 _citation.page_last 2486 _citation.year 2000 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10741967 _citation.pdbx_database_id_DOI 10.1126/science.287.5462.2482 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Keck, J.L.' 1 primary 'Roche, D.D.' 2 primary 'Lynch, A.S.' 3 primary 'Berger, J.M.' 4 # _cell.entry_id 1DDE _cell.length_a 38.020 _cell.length_b 55.890 _cell.length_c 139.490 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DDE _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA PRIMASE' 38222.254 1 2.7.7.- ? '36 KDA CATALYTIC CORE DOMAIN' ? 2 non-polymer syn 'YTTRIUM ION' 88.906 4 ? ? ? ? 3 water nat water 18.015 290 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name DNAG # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MRGSHHHHHHGSGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGN PENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDN AEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQL RFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQEL GNKLGILDDSQLERLMPK ; _entity_poly.pdbx_seq_one_letter_code_can ;MRGSHHHHHHGSGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGN PENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDN AEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQL RFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQEL GNKLGILDDSQLERLMPK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 GLY n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 SER n 1 13 GLY n 1 14 SER n 1 15 MET n 1 16 HIS n 1 17 GLN n 1 18 ARG n 1 19 GLN n 1 20 THR n 1 21 LEU n 1 22 TYR n 1 23 GLN n 1 24 LEU n 1 25 MET n 1 26 ASP n 1 27 GLY n 1 28 LEU n 1 29 ASN n 1 30 THR n 1 31 PHE n 1 32 TYR n 1 33 GLN n 1 34 GLN n 1 35 SER n 1 36 LEU n 1 37 GLN n 1 38 GLN n 1 39 PRO n 1 40 VAL n 1 41 ALA n 1 42 THR n 1 43 SER n 1 44 ALA n 1 45 ARG n 1 46 GLN n 1 47 TYR n 1 48 LEU n 1 49 GLU n 1 50 LYS n 1 51 ARG n 1 52 GLY n 1 53 LEU n 1 54 SER n 1 55 HIS n 1 56 GLU n 1 57 VAL n 1 58 ILE n 1 59 ALA n 1 60 ARG n 1 61 PHE n 1 62 ALA n 1 63 ILE n 1 64 GLY n 1 65 PHE n 1 66 ALA n 1 67 PRO n 1 68 PRO n 1 69 GLY n 1 70 TRP n 1 71 ASP n 1 72 ASN n 1 73 VAL n 1 74 LEU n 1 75 LYS n 1 76 ARG n 1 77 PHE n 1 78 GLY n 1 79 GLY n 1 80 ASN n 1 81 PRO n 1 82 GLU n 1 83 ASN n 1 84 ARG n 1 85 GLN n 1 86 SER n 1 87 LEU n 1 88 ILE n 1 89 ASP n 1 90 ALA n 1 91 GLY n 1 92 MET n 1 93 LEU n 1 94 VAL n 1 95 THR n 1 96 ASN n 1 97 ASP n 1 98 GLN n 1 99 GLY n 1 100 ARG n 1 101 SER n 1 102 TYR n 1 103 ASP n 1 104 ARG n 1 105 PHE n 1 106 ARG n 1 107 GLU n 1 108 ARG n 1 109 VAL n 1 110 MET n 1 111 PHE n 1 112 PRO n 1 113 ILE n 1 114 ARG n 1 115 ASP n 1 116 LYS n 1 117 ARG n 1 118 GLY n 1 119 ARG n 1 120 VAL n 1 121 ILE n 1 122 GLY n 1 123 PHE n 1 124 GLY n 1 125 GLY n 1 126 ARG n 1 127 VAL n 1 128 LEU n 1 129 GLY n 1 130 ASN n 1 131 ASP n 1 132 THR n 1 133 PRO n 1 134 LYS n 1 135 TYR n 1 136 LEU n 1 137 ASN n 1 138 SER n 1 139 PRO n 1 140 GLU n 1 141 THR n 1 142 ASP n 1 143 ILE n 1 144 PHE n 1 145 HIS n 1 146 LYS n 1 147 GLY n 1 148 ARG n 1 149 GLN n 1 150 LEU n 1 151 TYR n 1 152 GLY n 1 153 LEU n 1 154 TYR n 1 155 GLU n 1 156 ALA n 1 157 GLN n 1 158 GLN n 1 159 ASP n 1 160 ASN n 1 161 ALA n 1 162 GLU n 1 163 PRO n 1 164 ASN n 1 165 ARG n 1 166 LEU n 1 167 LEU n 1 168 VAL n 1 169 VAL n 1 170 GLU n 1 171 GLY n 1 172 TYR n 1 173 MET n 1 174 ASP n 1 175 VAL n 1 176 VAL n 1 177 ALA n 1 178 LEU n 1 179 ALA n 1 180 GLN n 1 181 TYR n 1 182 GLY n 1 183 ILE n 1 184 ASN n 1 185 TYR n 1 186 ALA n 1 187 VAL n 1 188 ALA n 1 189 SER n 1 190 LEU n 1 191 GLY n 1 192 THR n 1 193 SER n 1 194 THR n 1 195 THR n 1 196 ALA n 1 197 ASP n 1 198 HIS n 1 199 ILE n 1 200 GLN n 1 201 LEU n 1 202 LEU n 1 203 PHE n 1 204 ARG n 1 205 ALA n 1 206 THR n 1 207 ASN n 1 208 ASN n 1 209 VAL n 1 210 ILE n 1 211 CYS n 1 212 CYS n 1 213 TYR n 1 214 ASP n 1 215 GLY n 1 216 ASP n 1 217 ARG n 1 218 ALA n 1 219 GLY n 1 220 ARG n 1 221 ASP n 1 222 ALA n 1 223 ALA n 1 224 TRP n 1 225 ARG n 1 226 ALA n 1 227 LEU n 1 228 GLU n 1 229 THR n 1 230 ALA n 1 231 LEU n 1 232 PRO n 1 233 TYR n 1 234 MET n 1 235 THR n 1 236 ASP n 1 237 GLY n 1 238 ARG n 1 239 GLN n 1 240 LEU n 1 241 ARG n 1 242 PHE n 1 243 MET n 1 244 PHE n 1 245 LEU n 1 246 PRO n 1 247 ASP n 1 248 GLY n 1 249 GLU n 1 250 ASP n 1 251 PRO n 1 252 ASP n 1 253 THR n 1 254 LEU n 1 255 VAL n 1 256 ARG n 1 257 LYS n 1 258 GLU n 1 259 GLY n 1 260 LYS n 1 261 GLU n 1 262 ALA n 1 263 PHE n 1 264 GLU n 1 265 ALA n 1 266 ARG n 1 267 MET n 1 268 GLU n 1 269 GLN n 1 270 ALA n 1 271 MET n 1 272 PRO n 1 273 LEU n 1 274 SER n 1 275 ALA n 1 276 PHE n 1 277 LEU n 1 278 PHE n 1 279 ASN n 1 280 SER n 1 281 LEU n 1 282 MET n 1 283 PRO n 1 284 GLN n 1 285 VAL n 1 286 ASP n 1 287 LEU n 1 288 SER n 1 289 THR n 1 290 PRO n 1 291 ASP n 1 292 GLY n 1 293 ARG n 1 294 ALA n 1 295 ARG n 1 296 LEU n 1 297 SER n 1 298 THR n 1 299 LEU n 1 300 ALA n 1 301 LEU n 1 302 PRO n 1 303 LEU n 1 304 ILE n 1 305 SER n 1 306 GLN n 1 307 VAL n 1 308 PRO n 1 309 GLY n 1 310 GLU n 1 311 THR n 1 312 LEU n 1 313 ARG n 1 314 ILE n 1 315 TYR n 1 316 LEU n 1 317 ARG n 1 318 GLN n 1 319 GLU n 1 320 LEU n 1 321 GLY n 1 322 ASN n 1 323 LYS n 1 324 LEU n 1 325 GLY n 1 326 ILE n 1 327 LEU n 1 328 ASP n 1 329 ASP n 1 330 SER n 1 331 GLN n 1 332 LEU n 1 333 GLU n 1 334 ARG n 1 335 LEU n 1 336 MET n 1 337 PRO n 1 338 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain SG13009 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'PREP4 DERIVATIVE' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIM_ECOLI _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P0ABS5 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DDE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 16 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 338 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0ABS5 _struct_ref_seq.db_align_beg 111 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 433 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 111 _struct_ref_seq.pdbx_auth_seq_align_end 433 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1DDE MET A 1 ? UNP P0ABS5 GLU 96 'EXPRESSION TAG' 96 1 1 1DDE ARG A 2 ? UNP P0ABS5 VAL 97 'EXPRESSION TAG' 97 2 1 1DDE GLY A 3 ? UNP P0ABS5 PRO 98 'EXPRESSION TAG' 98 3 1 1DDE SER A 4 ? UNP P0ABS5 PHE 99 'EXPRESSION TAG' 99 4 1 1DDE HIS A 5 ? UNP P0ABS5 GLU 100 'EXPRESSION TAG' 100 5 1 1DDE HIS A 6 ? UNP P0ABS5 ALA 101 'EXPRESSION TAG' 101 6 1 1DDE HIS A 7 ? UNP P0ABS5 GLY 100 'EXPRESSION TAG' 102 7 1 1DDE HIS A 8 ? UNP P0ABS5 SER 101 'EXPRESSION TAG' 103 8 1 1DDE HIS A 9 ? UNP P0ABS5 GLY 100 'EXPRESSION TAG' 104 9 1 1DDE HIS A 10 ? UNP P0ABS5 PRO 101 'EXPRESSION TAG' 105 10 1 1DDE GLY A 11 ? UNP P0ABS5 SER 100 'EXPRESSION TAG' 106 11 1 1DDE SER A 12 ? UNP P0ABS5 GLN 101 'EXPRESSION TAG' 107 12 1 1DDE GLY A 13 ? UNP P0ABS5 ILE 100 'EXPRESSION TAG' 108 13 1 1DDE SER A 14 ? UNP P0ABS5 GLU 101 'EXPRESSION TAG' 109 14 1 1DDE MET A 15 ? UNP P0ABS5 ARG 100 'EXPRESSION TAG' 110 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 Y1 non-polymer . 'YTTRIUM ION' ? 'Y 2' 88.906 # _exptl.entry_id 1DDE _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_percent_sol 36.53 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details ;18-21% PEG4000, 5% PEG200, 30% ETHYLENE GLYCOL, 0.2M AMMONIUM ACETATE, 0.05M SODIUM ACETATE, PH 5.0, 0.1% DIOXANE, 2-8 MM YCL2, VAPOR DIFFUSION, HANGING DROP ; _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 110.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 1999-09-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength 1.00 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DDE _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.7 _reflns.number_obs 39886 _reflns.number_all 40211 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.0540000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.2 _reflns.B_iso_Wilson_estimate 22.5 _reflns.pdbx_redundancy 5.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 94.6 _reflns_shell.Rmerge_I_obs 0.2870000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1DDE _refine.ls_number_reflns_obs 39886 _refine.ls_number_reflns_all 40211 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.7 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2090000 _refine.ls_R_factor_R_free 0.2630000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 3989 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2456 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 290 _refine_hist.number_atoms_total 2750 _refine_hist.d_res_high 1.7 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 1.6 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.008 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1DDE _struct.title 'STRUCTURE OF THE DNAG CATALYTIC CORE' _struct.pdbx_descriptor 'DNA PRIMASE (E.C.2.7.7.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DDE _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TOPRIM, 3-HELIX BUNDLE, DNA-BINDING PROTEIN, RNA POLYMERASE, REPLICATION PROTEIN, PRIMASE, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 20 ? GLN A 37 ? THR A 115 GLN A 132 1 ? 18 HELX_P HELX_P2 2 GLN A 38 ? VAL A 40 ? GLN A 133 VAL A 135 5 ? 3 HELX_P HELX_P3 3 ALA A 41 ? ARG A 51 ? ALA A 136 ARG A 146 1 ? 11 HELX_P HELX_P4 4 SER A 54 ? PHE A 61 ? SER A 149 PHE A 156 1 ? 8 HELX_P HELX_P5 5 ASP A 71 ? GLY A 78 ? ASP A 166 GLY A 173 1 ? 8 HELX_P HELX_P6 6 ASN A 80 ? ALA A 90 ? ASN A 175 ALA A 185 1 ? 11 HELX_P HELX_P7 7 HIS A 145 ? GLN A 149 ? HIS A 240 GLN A 244 5 ? 5 HELX_P HELX_P8 8 GLY A 152 ? ASN A 160 ? GLY A 247 ASN A 255 1 ? 9 HELX_P HELX_P9 9 GLY A 171 ? TYR A 181 ? GLY A 266 TYR A 276 1 ? 11 HELX_P HELX_P10 10 THR A 195 ? THR A 206 ? THR A 290 THR A 301 1 ? 12 HELX_P HELX_P11 11 ASP A 216 ? LEU A 231 ? ASP A 311 LEU A 326 1 ? 16 HELX_P HELX_P12 12 PRO A 232 ? MET A 234 ? PRO A 327 MET A 329 5 ? 3 HELX_P HELX_P13 13 ASP A 250 ? GLY A 259 ? ASP A 345 GLY A 354 1 ? 10 HELX_P HELX_P14 14 GLU A 258 ? GLN A 269 ? GLU A 353 GLN A 364 1 ? 12 HELX_P HELX_P15 15 LEU A 273 ? MET A 282 ? LEU A 368 MET A 377 1 ? 10 HELX_P HELX_P16 16 PRO A 283 ? VAL A 285 ? PRO A 378 VAL A 380 5 ? 3 HELX_P HELX_P17 17 THR A 289 ? SER A 305 ? THR A 384 SER A 400 1 ? 17 HELX_P HELX_P18 18 GLY A 309 ? GLY A 325 ? GLY A 404 GLY A 420 1 ? 17 HELX_P HELX_P19 19 ASP A 328 ? LEU A 332 ? ASP A 423 LEU A 427 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? parallel C 2 3 ? parallel C 3 4 ? parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 64 ? ALA A 66 ? GLY A 159 ALA A 161 A 2 ARG A 108 ? ARG A 114 ? ARG A 203 ARG A 209 A 3 VAL A 120 ? VAL A 127 ? VAL A 215 VAL A 222 A 4 TYR A 135 ? ASN A 137 ? TYR A 230 ASN A 232 B 1 LEU A 93 ? THR A 95 ? LEU A 188 THR A 190 B 2 SER A 101 ? ASP A 103 ? SER A 196 ASP A 198 C 1 ALA A 186 ? ALA A 188 ? ALA A 281 ALA A 283 C 2 LEU A 166 ? VAL A 169 ? LEU A 261 VAL A 264 C 3 ASN A 208 ? GLY A 215 ? ASN A 303 GLY A 310 C 4 GLN A 239 ? ASP A 247 ? GLN A 334 ASP A 342 C 5 MET A 271 ? PRO A 272 ? MET A 366 PRO A 367 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 66 ? N ALA A 161 O ARG A 108 ? O ARG A 203 A 2 3 O ILE A 113 ? O ILE A 208 N ILE A 121 ? N ILE A 216 A 3 4 O GLY A 125 ? O GLY A 220 N LEU A 136 ? N LEU A 231 B 1 2 N VAL A 94 ? N VAL A 189 O TYR A 102 ? O TYR A 197 C 1 2 N VAL A 187 ? N VAL A 282 O LEU A 167 ? O LEU A 262 C 2 3 N LEU A 166 ? N LEU A 261 O ASN A 208 ? O ASN A 303 C 3 4 N VAL A 209 ? N VAL A 304 O GLN A 239 ? O GLN A 334 C 4 5 O PHE A 242 ? O PHE A 337 N MET A 271 ? N MET A 366 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE Y1 A 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE Y1 A 2' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE Y1 A 3' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE Y1 A 4' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ASP A 236 ? ASP A 331 . ? 1_555 ? 2 AC1 7 ASP A 247 ? ASP A 342 . ? 1_655 ? 3 AC1 7 GLU A 310 ? GLU A 405 . ? 1_555 ? 4 AC1 7 HOH F . ? HOH A 445 . ? 1_555 ? 5 AC1 7 HOH F . ? HOH A 457 . ? 1_555 ? 6 AC1 7 HOH F . ? HOH A 528 . ? 1_555 ? 7 AC1 7 HOH F . ? HOH A 535 . ? 1_555 ? 8 AC2 4 Y1 D . ? Y1 A 3 . ? 1_555 ? 9 AC2 4 Y1 E . ? Y1 A 4 . ? 1_555 ? 10 AC2 4 GLU A 170 ? GLU A 265 . ? 1_555 ? 11 AC2 4 ASP A 214 ? ASP A 309 . ? 1_555 ? 12 AC3 4 Y1 C . ? Y1 A 2 . ? 1_555 ? 13 AC3 4 GLU A 170 ? GLU A 265 . ? 1_555 ? 14 AC3 4 HOH F . ? HOH A 596 . ? 1_555 ? 15 AC3 4 HOH F . ? HOH A 610 . ? 3_545 ? 16 AC4 4 Y1 C . ? Y1 A 2 . ? 1_555 ? 17 AC4 4 ASP A 214 ? ASP A 309 . ? 1_555 ? 18 AC4 4 HOH F . ? HOH A 559 . ? 1_555 ? 19 AC4 4 HOH F . ? HOH A 585 . ? 1_555 ? # _database_PDB_matrix.entry_id 1DDE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1DDE _atom_sites.fract_transf_matrix[1][1] 0.026302 _atom_sites.fract_transf_matrix[1][2] -0.000001 _atom_sites.fract_transf_matrix[1][3] -0.000001 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017892 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007169 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S Y # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 96 ? ? ? A . n A 1 2 ARG 2 97 ? ? ? A . n A 1 3 GLY 3 98 ? ? ? A . n A 1 4 SER 4 99 ? ? ? A . n A 1 5 HIS 5 100 ? ? ? A . n A 1 6 HIS 6 101 ? ? ? A . n A 1 7 HIS 7 102 ? ? ? A . n A 1 8 HIS 8 103 ? ? ? A . n A 1 9 HIS 9 104 ? ? ? A . n A 1 10 HIS 10 105 ? ? ? A . n A 1 11 GLY 11 106 ? ? ? A . n A 1 12 SER 12 107 ? ? ? A . n A 1 13 GLY 13 108 ? ? ? A . n A 1 14 SER 14 109 ? ? ? A . n A 1 15 MET 15 110 ? ? ? A . n A 1 16 HIS 16 111 ? ? ? A . n A 1 17 GLN 17 112 ? ? ? A . n A 1 18 ARG 18 113 ? ? ? A . n A 1 19 GLN 19 114 ? ? ? A . n A 1 20 THR 20 115 115 THR THR A . n A 1 21 LEU 21 116 116 LEU LEU A . n A 1 22 TYR 22 117 117 TYR TYR A . n A 1 23 GLN 23 118 118 GLN GLN A . n A 1 24 LEU 24 119 119 LEU LEU A . n A 1 25 MET 25 120 120 MET MET A . n A 1 26 ASP 26 121 121 ASP ASP A . n A 1 27 GLY 27 122 122 GLY GLY A . n A 1 28 LEU 28 123 123 LEU LEU A . n A 1 29 ASN 29 124 124 ASN ASN A . n A 1 30 THR 30 125 125 THR THR A . n A 1 31 PHE 31 126 126 PHE PHE A . n A 1 32 TYR 32 127 127 TYR TYR A . n A 1 33 GLN 33 128 128 GLN GLN A . n A 1 34 GLN 34 129 129 GLN GLN A . n A 1 35 SER 35 130 130 SER SER A . n A 1 36 LEU 36 131 131 LEU LEU A . n A 1 37 GLN 37 132 132 GLN GLN A . n A 1 38 GLN 38 133 133 GLN GLN A . n A 1 39 PRO 39 134 134 PRO PRO A . n A 1 40 VAL 40 135 135 VAL VAL A . n A 1 41 ALA 41 136 136 ALA ALA A . n A 1 42 THR 42 137 137 THR THR A . n A 1 43 SER 43 138 138 SER SER A . n A 1 44 ALA 44 139 139 ALA ALA A . n A 1 45 ARG 45 140 140 ARG ARG A . n A 1 46 GLN 46 141 141 GLN GLN A . n A 1 47 TYR 47 142 142 TYR TYR A . n A 1 48 LEU 48 143 143 LEU LEU A . n A 1 49 GLU 49 144 144 GLU GLU A . n A 1 50 LYS 50 145 145 LYS LYS A . n A 1 51 ARG 51 146 146 ARG ARG A . n A 1 52 GLY 52 147 147 GLY GLY A . n A 1 53 LEU 53 148 148 LEU LEU A . n A 1 54 SER 54 149 149 SER SER A . n A 1 55 HIS 55 150 150 HIS HIS A . n A 1 56 GLU 56 151 151 GLU GLU A . n A 1 57 VAL 57 152 152 VAL VAL A . n A 1 58 ILE 58 153 153 ILE ILE A . n A 1 59 ALA 59 154 154 ALA ALA A . n A 1 60 ARG 60 155 155 ARG ARG A . n A 1 61 PHE 61 156 156 PHE PHE A . n A 1 62 ALA 62 157 157 ALA ALA A . n A 1 63 ILE 63 158 158 ILE ILE A . n A 1 64 GLY 64 159 159 GLY GLY A . n A 1 65 PHE 65 160 160 PHE PHE A . n A 1 66 ALA 66 161 161 ALA ALA A . n A 1 67 PRO 67 162 162 PRO PRO A . n A 1 68 PRO 68 163 163 PRO PRO A . n A 1 69 GLY 69 164 164 GLY GLY A . n A 1 70 TRP 70 165 165 TRP TRP A . n A 1 71 ASP 71 166 166 ASP ASP A . n A 1 72 ASN 72 167 167 ASN ASN A . n A 1 73 VAL 73 168 168 VAL VAL A . n A 1 74 LEU 74 169 169 LEU LEU A . n A 1 75 LYS 75 170 170 LYS LYS A . n A 1 76 ARG 76 171 171 ARG ARG A . n A 1 77 PHE 77 172 172 PHE PHE A . n A 1 78 GLY 78 173 173 GLY GLY A . n A 1 79 GLY 79 174 174 GLY GLY A . n A 1 80 ASN 80 175 175 ASN ASN A . n A 1 81 PRO 81 176 176 PRO PRO A . n A 1 82 GLU 82 177 177 GLU GLU A . n A 1 83 ASN 83 178 178 ASN ASN A . n A 1 84 ARG 84 179 179 ARG ARG A . n A 1 85 GLN 85 180 180 GLN GLN A . n A 1 86 SER 86 181 181 SER SER A . n A 1 87 LEU 87 182 182 LEU LEU A . n A 1 88 ILE 88 183 183 ILE ILE A . n A 1 89 ASP 89 184 184 ASP ASP A . n A 1 90 ALA 90 185 185 ALA ALA A . n A 1 91 GLY 91 186 186 GLY GLY A . n A 1 92 MET 92 187 187 MET MET A . n A 1 93 LEU 93 188 188 LEU LEU A . n A 1 94 VAL 94 189 189 VAL VAL A . n A 1 95 THR 95 190 190 THR THR A . n A 1 96 ASN 96 191 191 ASN ASN A . n A 1 97 ASP 97 192 ? ? ? A . n A 1 98 GLN 98 193 ? ? ? A . n A 1 99 GLY 99 194 ? ? ? A . n A 1 100 ARG 100 195 195 ARG ARG A . n A 1 101 SER 101 196 196 SER SER A . n A 1 102 TYR 102 197 197 TYR TYR A . n A 1 103 ASP 103 198 198 ASP ASP A . n A 1 104 ARG 104 199 199 ARG ARG A . n A 1 105 PHE 105 200 200 PHE PHE A . n A 1 106 ARG 106 201 201 ARG ARG A . n A 1 107 GLU 107 202 202 GLU GLU A . n A 1 108 ARG 108 203 203 ARG ARG A . n A 1 109 VAL 109 204 204 VAL VAL A . n A 1 110 MET 110 205 205 MET MET A . n A 1 111 PHE 111 206 206 PHE PHE A . n A 1 112 PRO 112 207 207 PRO PRO A . n A 1 113 ILE 113 208 208 ILE ILE A . n A 1 114 ARG 114 209 209 ARG ARG A . n A 1 115 ASP 115 210 210 ASP ASP A . n A 1 116 LYS 116 211 211 LYS LYS A . n A 1 117 ARG 117 212 212 ARG ARG A . n A 1 118 GLY 118 213 213 GLY GLY A . n A 1 119 ARG 119 214 214 ARG ARG A . n A 1 120 VAL 120 215 215 VAL VAL A . n A 1 121 ILE 121 216 216 ILE ILE A . n A 1 122 GLY 122 217 217 GLY GLY A . n A 1 123 PHE 123 218 218 PHE PHE A . n A 1 124 GLY 124 219 219 GLY GLY A . n A 1 125 GLY 125 220 220 GLY GLY A . n A 1 126 ARG 126 221 221 ARG ARG A . n A 1 127 VAL 127 222 222 VAL VAL A . n A 1 128 LEU 128 223 223 LEU LEU A . n A 1 129 GLY 129 224 224 GLY GLY A . n A 1 130 ASN 130 225 225 ASN ASN A . n A 1 131 ASP 131 226 226 ASP ASP A . n A 1 132 THR 132 227 227 THR THR A . n A 1 133 PRO 133 228 228 PRO PRO A . n A 1 134 LYS 134 229 229 LYS LYS A . n A 1 135 TYR 135 230 230 TYR TYR A . n A 1 136 LEU 136 231 231 LEU LEU A . n A 1 137 ASN 137 232 232 ASN ASN A . n A 1 138 SER 138 233 233 SER SER A . n A 1 139 PRO 139 234 234 PRO PRO A . n A 1 140 GLU 140 235 235 GLU GLU A . n A 1 141 THR 141 236 236 THR THR A . n A 1 142 ASP 142 237 237 ASP ASP A . n A 1 143 ILE 143 238 238 ILE ILE A . n A 1 144 PHE 144 239 239 PHE PHE A . n A 1 145 HIS 145 240 240 HIS HIS A . n A 1 146 LYS 146 241 241 LYS LYS A . n A 1 147 GLY 147 242 242 GLY GLY A . n A 1 148 ARG 148 243 243 ARG ARG A . n A 1 149 GLN 149 244 244 GLN GLN A . n A 1 150 LEU 150 245 245 LEU LEU A . n A 1 151 TYR 151 246 246 TYR TYR A . n A 1 152 GLY 152 247 247 GLY GLY A . n A 1 153 LEU 153 248 248 LEU LEU A . n A 1 154 TYR 154 249 249 TYR TYR A . n A 1 155 GLU 155 250 250 GLU GLU A . n A 1 156 ALA 156 251 251 ALA ALA A . n A 1 157 GLN 157 252 252 GLN GLN A . n A 1 158 GLN 158 253 253 GLN GLN A . n A 1 159 ASP 159 254 254 ASP ASP A . n A 1 160 ASN 160 255 255 ASN ASN A . n A 1 161 ALA 161 256 256 ALA ALA A . n A 1 162 GLU 162 257 257 GLU GLU A . n A 1 163 PRO 163 258 258 PRO PRO A . n A 1 164 ASN 164 259 259 ASN ASN A . n A 1 165 ARG 165 260 260 ARG ARG A . n A 1 166 LEU 166 261 261 LEU LEU A . n A 1 167 LEU 167 262 262 LEU LEU A . n A 1 168 VAL 168 263 263 VAL VAL A . n A 1 169 VAL 169 264 264 VAL VAL A . n A 1 170 GLU 170 265 265 GLU GLU A . n A 1 171 GLY 171 266 266 GLY GLY A . n A 1 172 TYR 172 267 267 TYR TYR A . n A 1 173 MET 173 268 268 MET MET A . n A 1 174 ASP 174 269 269 ASP ASP A . n A 1 175 VAL 175 270 270 VAL VAL A . n A 1 176 VAL 176 271 271 VAL VAL A . n A 1 177 ALA 177 272 272 ALA ALA A . n A 1 178 LEU 178 273 273 LEU LEU A . n A 1 179 ALA 179 274 274 ALA ALA A . n A 1 180 GLN 180 275 275 GLN GLN A . n A 1 181 TYR 181 276 276 TYR TYR A . n A 1 182 GLY 182 277 277 GLY GLY A . n A 1 183 ILE 183 278 278 ILE ILE A . n A 1 184 ASN 184 279 279 ASN ASN A . n A 1 185 TYR 185 280 280 TYR TYR A . n A 1 186 ALA 186 281 281 ALA ALA A . n A 1 187 VAL 187 282 282 VAL VAL A . n A 1 188 ALA 188 283 283 ALA ALA A . n A 1 189 SER 189 284 284 SER SER A . n A 1 190 LEU 190 285 285 LEU LEU A . n A 1 191 GLY 191 286 286 GLY GLY A . n A 1 192 THR 192 287 287 THR THR A . n A 1 193 SER 193 288 288 SER SER A . n A 1 194 THR 194 289 289 THR THR A . n A 1 195 THR 195 290 290 THR THR A . n A 1 196 ALA 196 291 291 ALA ALA A . n A 1 197 ASP 197 292 292 ASP ASP A . n A 1 198 HIS 198 293 293 HIS HIS A . n A 1 199 ILE 199 294 294 ILE ILE A . n A 1 200 GLN 200 295 295 GLN GLN A . n A 1 201 LEU 201 296 296 LEU LEU A . n A 1 202 LEU 202 297 297 LEU LEU A . n A 1 203 PHE 203 298 298 PHE PHE A . n A 1 204 ARG 204 299 299 ARG ARG A . n A 1 205 ALA 205 300 300 ALA ALA A . n A 1 206 THR 206 301 301 THR THR A . n A 1 207 ASN 207 302 302 ASN ASN A . n A 1 208 ASN 208 303 303 ASN ASN A . n A 1 209 VAL 209 304 304 VAL VAL A . n A 1 210 ILE 210 305 305 ILE ILE A . n A 1 211 CYS 211 306 306 CYS CYS A . n A 1 212 CYS 212 307 307 CYS CYS A . n A 1 213 TYR 213 308 308 TYR TYR A . n A 1 214 ASP 214 309 309 ASP ASP A . n A 1 215 GLY 215 310 310 GLY GLY A . n A 1 216 ASP 216 311 311 ASP ASP A . n A 1 217 ARG 217 312 312 ARG ARG A . n A 1 218 ALA 218 313 313 ALA ALA A . n A 1 219 GLY 219 314 314 GLY GLY A . n A 1 220 ARG 220 315 315 ARG ARG A . n A 1 221 ASP 221 316 316 ASP ASP A . n A 1 222 ALA 222 317 317 ALA ALA A . n A 1 223 ALA 223 318 318 ALA ALA A . n A 1 224 TRP 224 319 319 TRP TRP A . n A 1 225 ARG 225 320 320 ARG ARG A . n A 1 226 ALA 226 321 321 ALA ALA A . n A 1 227 LEU 227 322 322 LEU LEU A . n A 1 228 GLU 228 323 323 GLU GLU A . n A 1 229 THR 229 324 324 THR THR A . n A 1 230 ALA 230 325 325 ALA ALA A . n A 1 231 LEU 231 326 326 LEU LEU A . n A 1 232 PRO 232 327 327 PRO PRO A . n A 1 233 TYR 233 328 328 TYR TYR A . n A 1 234 MET 234 329 329 MET MET A . n A 1 235 THR 235 330 330 THR THR A . n A 1 236 ASP 236 331 331 ASP ASP A . n A 1 237 GLY 237 332 332 GLY GLY A . n A 1 238 ARG 238 333 333 ARG ARG A . n A 1 239 GLN 239 334 334 GLN GLN A . n A 1 240 LEU 240 335 335 LEU LEU A . n A 1 241 ARG 241 336 336 ARG ARG A . n A 1 242 PHE 242 337 337 PHE PHE A . n A 1 243 MET 243 338 338 MET MET A . n A 1 244 PHE 244 339 339 PHE PHE A . n A 1 245 LEU 245 340 340 LEU LEU A . n A 1 246 PRO 246 341 341 PRO PRO A . n A 1 247 ASP 247 342 342 ASP ASP A . n A 1 248 GLY 248 343 343 GLY GLY A . n A 1 249 GLU 249 344 344 GLU GLU A . n A 1 250 ASP 250 345 345 ASP ASP A . n A 1 251 PRO 251 346 346 PRO PRO A . n A 1 252 ASP 252 347 347 ASP ASP A . n A 1 253 THR 253 348 348 THR THR A . n A 1 254 LEU 254 349 349 LEU LEU A . n A 1 255 VAL 255 350 350 VAL VAL A . n A 1 256 ARG 256 351 351 ARG ARG A . n A 1 257 LYS 257 352 352 LYS LYS A . n A 1 258 GLU 258 353 353 GLU GLU A . n A 1 259 GLY 259 354 354 GLY GLY A . n A 1 260 LYS 260 355 355 LYS LYS A . n A 1 261 GLU 261 356 356 GLU GLU A . n A 1 262 ALA 262 357 357 ALA ALA A . n A 1 263 PHE 263 358 358 PHE PHE A . n A 1 264 GLU 264 359 359 GLU GLU A . n A 1 265 ALA 265 360 360 ALA ALA A . n A 1 266 ARG 266 361 361 ARG ARG A . n A 1 267 MET 267 362 362 MET MET A . n A 1 268 GLU 268 363 363 GLU GLU A . n A 1 269 GLN 269 364 364 GLN GLN A . n A 1 270 ALA 270 365 365 ALA ALA A . n A 1 271 MET 271 366 366 MET MET A . n A 1 272 PRO 272 367 367 PRO PRO A . n A 1 273 LEU 273 368 368 LEU LEU A . n A 1 274 SER 274 369 369 SER SER A . n A 1 275 ALA 275 370 370 ALA ALA A . n A 1 276 PHE 276 371 371 PHE PHE A . n A 1 277 LEU 277 372 372 LEU LEU A . n A 1 278 PHE 278 373 373 PHE PHE A . n A 1 279 ASN 279 374 374 ASN ASN A . n A 1 280 SER 280 375 375 SER SER A . n A 1 281 LEU 281 376 376 LEU LEU A . n A 1 282 MET 282 377 377 MET MET A . n A 1 283 PRO 283 378 378 PRO PRO A . n A 1 284 GLN 284 379 379 GLN GLN A . n A 1 285 VAL 285 380 380 VAL VAL A . n A 1 286 ASP 286 381 381 ASP ASP A . n A 1 287 LEU 287 382 382 LEU LEU A . n A 1 288 SER 288 383 383 SER SER A . n A 1 289 THR 289 384 384 THR THR A . n A 1 290 PRO 290 385 385 PRO PRO A . n A 1 291 ASP 291 386 386 ASP ASP A . n A 1 292 GLY 292 387 387 GLY GLY A . n A 1 293 ARG 293 388 388 ARG ARG A . n A 1 294 ALA 294 389 389 ALA ALA A . n A 1 295 ARG 295 390 390 ARG ARG A . n A 1 296 LEU 296 391 391 LEU LEU A . n A 1 297 SER 297 392 392 SER SER A . n A 1 298 THR 298 393 393 THR THR A . n A 1 299 LEU 299 394 394 LEU LEU A . n A 1 300 ALA 300 395 395 ALA ALA A . n A 1 301 LEU 301 396 396 LEU LEU A . n A 1 302 PRO 302 397 397 PRO PRO A . n A 1 303 LEU 303 398 398 LEU LEU A . n A 1 304 ILE 304 399 399 ILE ILE A . n A 1 305 SER 305 400 400 SER SER A . n A 1 306 GLN 306 401 401 GLN GLN A . n A 1 307 VAL 307 402 402 VAL VAL A . n A 1 308 PRO 308 403 403 PRO PRO A . n A 1 309 GLY 309 404 404 GLY GLY A . n A 1 310 GLU 310 405 405 GLU GLU A . n A 1 311 THR 311 406 406 THR THR A . n A 1 312 LEU 312 407 407 LEU LEU A . n A 1 313 ARG 313 408 408 ARG ARG A . n A 1 314 ILE 314 409 409 ILE ILE A . n A 1 315 TYR 315 410 410 TYR TYR A . n A 1 316 LEU 316 411 411 LEU LEU A . n A 1 317 ARG 317 412 412 ARG ARG A . n A 1 318 GLN 318 413 413 GLN GLN A . n A 1 319 GLU 319 414 414 GLU GLU A . n A 1 320 LEU 320 415 415 LEU LEU A . n A 1 321 GLY 321 416 416 GLY GLY A . n A 1 322 ASN 322 417 417 ASN ASN A . n A 1 323 LYS 323 418 418 LYS LYS A . n A 1 324 LEU 324 419 419 LEU LEU A . n A 1 325 GLY 325 420 420 GLY GLY A . n A 1 326 ILE 326 421 421 ILE ILE A . n A 1 327 LEU 327 422 422 LEU LEU A . n A 1 328 ASP 328 423 423 ASP ASP A . n A 1 329 ASP 329 424 424 ASP ASP A . n A 1 330 SER 330 425 425 SER SER A . n A 1 331 GLN 331 426 426 GLN GLN A . n A 1 332 LEU 332 427 427 LEU LEU A . n A 1 333 GLU 333 428 ? ? ? A . n A 1 334 ARG 334 429 ? ? ? A . n A 1 335 LEU 335 430 ? ? ? A . n A 1 336 MET 336 431 ? ? ? A . n A 1 337 PRO 337 432 ? ? ? A . n A 1 338 LYS 338 433 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Y1 1 1 1 Y1 Y1 A . C 2 Y1 1 2 2 Y1 Y1 A . D 2 Y1 1 3 3 Y1 Y1 A . E 2 Y1 1 4 4 Y1 Y1 A . F 3 HOH 1 434 1 HOH HOH A . F 3 HOH 2 435 2 HOH HOH A . F 3 HOH 3 436 3 HOH HOH A . F 3 HOH 4 437 4 HOH HOH A . F 3 HOH 5 438 5 HOH HOH A . F 3 HOH 6 439 6 HOH HOH A . F 3 HOH 7 440 7 HOH HOH A . F 3 HOH 8 441 8 HOH HOH A . F 3 HOH 9 442 9 HOH HOH A . F 3 HOH 10 443 10 HOH HOH A . F 3 HOH 11 444 11 HOH HOH A . F 3 HOH 12 445 12 HOH HOH A . F 3 HOH 13 446 13 HOH HOH A . F 3 HOH 14 447 14 HOH HOH A . F 3 HOH 15 448 15 HOH HOH A . F 3 HOH 16 449 16 HOH HOH A . F 3 HOH 17 450 17 HOH HOH A . F 3 HOH 18 451 18 HOH HOH A . F 3 HOH 19 452 19 HOH HOH A . F 3 HOH 20 453 20 HOH HOH A . F 3 HOH 21 454 21 HOH HOH A . F 3 HOH 22 455 22 HOH HOH A . F 3 HOH 23 456 23 HOH HOH A . F 3 HOH 24 457 24 HOH HOH A . F 3 HOH 25 458 25 HOH HOH A . F 3 HOH 26 459 26 HOH HOH A . F 3 HOH 27 460 27 HOH HOH A . F 3 HOH 28 461 28 HOH HOH A . F 3 HOH 29 462 29 HOH HOH A . F 3 HOH 30 463 30 HOH HOH A . F 3 HOH 31 464 31 HOH HOH A . F 3 HOH 32 465 32 HOH HOH A . F 3 HOH 33 466 33 HOH HOH A . F 3 HOH 34 467 34 HOH HOH A . F 3 HOH 35 468 35 HOH HOH A . F 3 HOH 36 469 36 HOH HOH A . F 3 HOH 37 470 37 HOH HOH A . F 3 HOH 38 471 38 HOH HOH A . F 3 HOH 39 472 39 HOH HOH A . F 3 HOH 40 473 40 HOH HOH A . F 3 HOH 41 474 41 HOH HOH A . F 3 HOH 42 475 42 HOH HOH A . F 3 HOH 43 476 43 HOH HOH A . F 3 HOH 44 477 44 HOH HOH A . F 3 HOH 45 478 45 HOH HOH A . F 3 HOH 46 479 46 HOH HOH A . F 3 HOH 47 480 47 HOH HOH A . F 3 HOH 48 481 48 HOH HOH A . F 3 HOH 49 482 49 HOH HOH A . F 3 HOH 50 483 50 HOH HOH A . F 3 HOH 51 484 51 HOH HOH A . F 3 HOH 52 485 52 HOH HOH A . F 3 HOH 53 486 53 HOH HOH A . F 3 HOH 54 487 54 HOH HOH A . F 3 HOH 55 488 55 HOH HOH A . F 3 HOH 56 489 56 HOH HOH A . F 3 HOH 57 490 57 HOH HOH A . F 3 HOH 58 491 58 HOH HOH A . F 3 HOH 59 492 59 HOH HOH A . F 3 HOH 60 493 60 HOH HOH A . F 3 HOH 61 494 61 HOH HOH A . F 3 HOH 62 495 62 HOH HOH A . F 3 HOH 63 496 63 HOH HOH A . F 3 HOH 64 497 64 HOH HOH A . F 3 HOH 65 498 65 HOH HOH A . F 3 HOH 66 499 66 HOH HOH A . F 3 HOH 67 500 67 HOH HOH A . F 3 HOH 68 501 68 HOH HOH A . F 3 HOH 69 502 69 HOH HOH A . F 3 HOH 70 503 70 HOH HOH A . F 3 HOH 71 504 71 HOH HOH A . F 3 HOH 72 505 72 HOH HOH A . F 3 HOH 73 506 73 HOH HOH A . F 3 HOH 74 507 74 HOH HOH A . F 3 HOH 75 508 75 HOH HOH A . F 3 HOH 76 509 76 HOH HOH A . F 3 HOH 77 510 77 HOH HOH A . F 3 HOH 78 511 78 HOH HOH A . F 3 HOH 79 512 79 HOH HOH A . F 3 HOH 80 513 80 HOH HOH A . F 3 HOH 81 514 81 HOH HOH A . F 3 HOH 82 515 82 HOH HOH A . F 3 HOH 83 516 83 HOH HOH A . F 3 HOH 84 517 84 HOH HOH A . F 3 HOH 85 518 85 HOH HOH A . F 3 HOH 86 519 86 HOH HOH A . F 3 HOH 87 520 87 HOH HOH A . F 3 HOH 88 521 88 HOH HOH A . F 3 HOH 89 522 89 HOH HOH A . F 3 HOH 90 523 90 HOH HOH A . F 3 HOH 91 524 91 HOH HOH A . F 3 HOH 92 525 92 HOH HOH A . F 3 HOH 93 526 93 HOH HOH A . F 3 HOH 94 527 94 HOH HOH A . F 3 HOH 95 528 95 HOH HOH A . F 3 HOH 96 529 96 HOH HOH A . F 3 HOH 97 530 97 HOH HOH A . F 3 HOH 98 531 98 HOH HOH A . F 3 HOH 99 532 99 HOH HOH A . F 3 HOH 100 533 100 HOH HOH A . F 3 HOH 101 534 101 HOH HOH A . F 3 HOH 102 535 102 HOH HOH A . F 3 HOH 103 536 103 HOH HOH A . F 3 HOH 104 537 104 HOH HOH A . F 3 HOH 105 538 105 HOH HOH A . F 3 HOH 106 539 106 HOH HOH A . F 3 HOH 107 540 107 HOH HOH A . F 3 HOH 108 541 108 HOH HOH A . F 3 HOH 109 542 109 HOH HOH A . F 3 HOH 110 543 110 HOH HOH A . F 3 HOH 111 544 111 HOH HOH A . F 3 HOH 112 545 112 HOH HOH A . F 3 HOH 113 546 113 HOH HOH A . F 3 HOH 114 547 114 HOH HOH A . F 3 HOH 115 548 115 HOH HOH A . F 3 HOH 116 549 116 HOH HOH A . F 3 HOH 117 550 117 HOH HOH A . F 3 HOH 118 551 118 HOH HOH A . F 3 HOH 119 552 119 HOH HOH A . F 3 HOH 120 553 120 HOH HOH A . F 3 HOH 121 554 121 HOH HOH A . F 3 HOH 122 555 122 HOH HOH A . F 3 HOH 123 556 123 HOH HOH A . F 3 HOH 124 557 124 HOH HOH A . F 3 HOH 125 558 125 HOH HOH A . F 3 HOH 126 559 126 HOH HOH A . F 3 HOH 127 560 127 HOH HOH A . F 3 HOH 128 561 128 HOH HOH A . F 3 HOH 129 562 129 HOH HOH A . F 3 HOH 130 563 130 HOH HOH A . F 3 HOH 131 564 131 HOH HOH A . F 3 HOH 132 565 132 HOH HOH A . F 3 HOH 133 566 133 HOH HOH A . F 3 HOH 134 567 134 HOH HOH A . F 3 HOH 135 568 135 HOH HOH A . F 3 HOH 136 569 136 HOH HOH A . F 3 HOH 137 570 137 HOH HOH A . F 3 HOH 138 571 138 HOH HOH A . F 3 HOH 139 572 139 HOH HOH A . F 3 HOH 140 573 140 HOH HOH A . F 3 HOH 141 574 141 HOH HOH A . F 3 HOH 142 575 142 HOH HOH A . F 3 HOH 143 576 143 HOH HOH A . F 3 HOH 144 577 144 HOH HOH A . F 3 HOH 145 578 145 HOH HOH A . F 3 HOH 146 579 146 HOH HOH A . F 3 HOH 147 580 147 HOH HOH A . F 3 HOH 148 581 148 HOH HOH A . F 3 HOH 149 582 149 HOH HOH A . F 3 HOH 150 583 150 HOH HOH A . F 3 HOH 151 584 151 HOH HOH A . F 3 HOH 152 585 152 HOH HOH A . F 3 HOH 153 586 153 HOH HOH A . F 3 HOH 154 587 154 HOH HOH A . F 3 HOH 155 588 155 HOH HOH A . F 3 HOH 156 589 156 HOH HOH A . F 3 HOH 157 590 157 HOH HOH A . F 3 HOH 158 591 158 HOH HOH A . F 3 HOH 159 592 159 HOH HOH A . F 3 HOH 160 593 160 HOH HOH A . F 3 HOH 161 594 161 HOH HOH A . F 3 HOH 162 595 162 HOH HOH A . F 3 HOH 163 596 163 HOH HOH A . F 3 HOH 164 597 164 HOH HOH A . F 3 HOH 165 598 165 HOH HOH A . F 3 HOH 166 599 166 HOH HOH A . F 3 HOH 167 600 167 HOH HOH A . F 3 HOH 168 601 168 HOH HOH A . F 3 HOH 169 602 169 HOH HOH A . F 3 HOH 170 603 170 HOH HOH A . F 3 HOH 171 604 171 HOH HOH A . F 3 HOH 172 605 172 HOH HOH A . F 3 HOH 173 606 173 HOH HOH A . F 3 HOH 174 607 174 HOH HOH A . F 3 HOH 175 608 175 HOH HOH A . F 3 HOH 176 609 176 HOH HOH A . F 3 HOH 177 610 177 HOH HOH A . F 3 HOH 178 611 178 HOH HOH A . F 3 HOH 179 612 179 HOH HOH A . F 3 HOH 180 613 180 HOH HOH A . F 3 HOH 181 614 181 HOH HOH A . F 3 HOH 182 615 182 HOH HOH A . F 3 HOH 183 616 183 HOH HOH A . F 3 HOH 184 617 184 HOH HOH A . F 3 HOH 185 618 185 HOH HOH A . F 3 HOH 186 619 186 HOH HOH A . F 3 HOH 187 620 187 HOH HOH A . F 3 HOH 188 621 188 HOH HOH A . F 3 HOH 189 622 189 HOH HOH A . F 3 HOH 190 623 190 HOH HOH A . F 3 HOH 191 624 191 HOH HOH A . F 3 HOH 192 625 192 HOH HOH A . F 3 HOH 193 626 193 HOH HOH A . F 3 HOH 194 627 194 HOH HOH A . F 3 HOH 195 628 195 HOH HOH A . F 3 HOH 196 629 196 HOH HOH A . F 3 HOH 197 630 197 HOH HOH A . F 3 HOH 198 631 198 HOH HOH A . F 3 HOH 199 632 199 HOH HOH A . F 3 HOH 200 633 200 HOH HOH A . F 3 HOH 201 634 201 HOH HOH A . F 3 HOH 202 635 202 HOH HOH A . F 3 HOH 203 636 203 HOH HOH A . F 3 HOH 204 637 204 HOH HOH A . F 3 HOH 205 638 205 HOH HOH A . F 3 HOH 206 639 206 HOH HOH A . F 3 HOH 207 640 207 HOH HOH A . F 3 HOH 208 641 208 HOH HOH A . F 3 HOH 209 642 209 HOH HOH A . F 3 HOH 210 643 210 HOH HOH A . F 3 HOH 211 644 211 HOH HOH A . F 3 HOH 212 645 212 HOH HOH A . F 3 HOH 213 646 213 HOH HOH A . F 3 HOH 214 647 214 HOH HOH A . F 3 HOH 215 648 215 HOH HOH A . F 3 HOH 216 649 216 HOH HOH A . F 3 HOH 217 650 217 HOH HOH A . F 3 HOH 218 651 218 HOH HOH A . F 3 HOH 219 652 219 HOH HOH A . F 3 HOH 220 653 220 HOH HOH A . F 3 HOH 221 654 221 HOH HOH A . F 3 HOH 222 655 222 HOH HOH A . F 3 HOH 223 656 223 HOH HOH A . F 3 HOH 224 657 224 HOH HOH A . F 3 HOH 225 658 225 HOH HOH A . F 3 HOH 226 659 226 HOH HOH A . F 3 HOH 227 660 227 HOH HOH A . F 3 HOH 228 661 228 HOH HOH A . F 3 HOH 229 662 229 HOH HOH A . F 3 HOH 230 663 230 HOH HOH A . F 3 HOH 231 664 231 HOH HOH A . F 3 HOH 232 665 232 HOH HOH A . F 3 HOH 233 666 233 HOH HOH A . F 3 HOH 234 667 234 HOH HOH A . F 3 HOH 235 668 235 HOH HOH A . F 3 HOH 236 669 236 HOH HOH A . F 3 HOH 237 670 237 HOH HOH A . F 3 HOH 238 671 238 HOH HOH A . F 3 HOH 239 672 239 HOH HOH A . F 3 HOH 240 673 240 HOH HOH A . F 3 HOH 241 674 241 HOH HOH A . F 3 HOH 242 675 242 HOH HOH A . F 3 HOH 243 676 243 HOH HOH A . F 3 HOH 244 677 244 HOH HOH A . F 3 HOH 245 678 245 HOH HOH A . F 3 HOH 246 679 246 HOH HOH A . F 3 HOH 247 680 247 HOH HOH A . F 3 HOH 248 681 248 HOH HOH A . F 3 HOH 249 682 249 HOH HOH A . F 3 HOH 250 683 250 HOH HOH A . F 3 HOH 251 684 251 HOH HOH A . F 3 HOH 252 685 252 HOH HOH A . F 3 HOH 253 686 253 HOH HOH A . F 3 HOH 254 687 254 HOH HOH A . F 3 HOH 255 688 255 HOH HOH A . F 3 HOH 256 689 256 HOH HOH A . F 3 HOH 257 690 257 HOH HOH A . F 3 HOH 258 691 258 HOH HOH A . F 3 HOH 259 692 259 HOH HOH A . F 3 HOH 260 693 260 HOH HOH A . F 3 HOH 261 694 261 HOH HOH A . F 3 HOH 262 695 262 HOH HOH A . F 3 HOH 263 696 263 HOH HOH A . F 3 HOH 264 697 264 HOH HOH A . F 3 HOH 265 698 265 HOH HOH A . F 3 HOH 266 699 266 HOH HOH A . F 3 HOH 267 700 267 HOH HOH A . F 3 HOH 268 701 268 HOH HOH A . F 3 HOH 269 702 269 HOH HOH A . F 3 HOH 270 703 270 HOH HOH A . F 3 HOH 271 704 271 HOH HOH A . F 3 HOH 272 705 272 HOH HOH A . F 3 HOH 273 706 273 HOH HOH A . F 3 HOH 274 707 274 HOH HOH A . F 3 HOH 275 708 275 HOH HOH A . F 3 HOH 276 709 276 HOH HOH A . F 3 HOH 277 710 277 HOH HOH A . F 3 HOH 278 711 278 HOH HOH A . F 3 HOH 279 712 279 HOH HOH A . F 3 HOH 280 713 280 HOH HOH A . F 3 HOH 281 714 281 HOH HOH A . F 3 HOH 282 715 282 HOH HOH A . F 3 HOH 283 716 283 HOH HOH A . F 3 HOH 284 717 284 HOH HOH A . F 3 HOH 285 718 285 HOH HOH A . F 3 HOH 286 719 286 HOH HOH A . F 3 HOH 287 720 287 HOH HOH A . F 3 HOH 288 721 288 HOH HOH A . F 3 HOH 289 722 289 HOH HOH A . F 3 HOH 290 723 290 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-04-07 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Experimental preparation' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.pdbx_details' 2 4 'Structure model' '_exptl_crystal_grow.temp' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 REFMAC refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_entry_details.entry_id 1DDE _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details 'Y(2+) IONS ARE PRESENT IN THE PUTATIVE ACTIVE SITE.' _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 A GLU 323 ? ? O A HOH 611 ? ? 2.10 2 1 OD1 A ASN 259 ? ? O A HOH 499 ? ? 2.16 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GLN _pdbx_validate_symm_contact.auth_seq_id_1 132 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 NH1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 312 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 1.86 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 146 ? ? CZ A ARG 146 ? ? NH2 A ARG 146 ? ? 124.54 120.30 4.24 0.50 N 2 1 NE A ARG 201 ? ? CZ A ARG 201 ? ? NH1 A ARG 201 ? ? 123.84 120.30 3.54 0.50 N 3 1 CA A THR 227 ? ? C A THR 227 ? ? O A THR 227 ? ? 98.89 120.10 -21.21 2.10 N 4 1 CA A PRO 228 ? ? N A PRO 228 ? ? CD A PRO 228 ? ? 101.26 111.50 -10.24 1.40 N 5 1 N A PRO 228 ? ? CA A PRO 228 ? ? CB A PRO 228 ? ? 110.77 102.60 8.17 1.10 N 6 1 N A PRO 228 ? ? CD A PRO 228 ? ? CG A PRO 228 ? ? 112.20 103.80 8.40 1.20 N 7 1 NE A ARG 320 ? ? CZ A ARG 320 ? ? NH2 A ARG 320 ? ? 116.99 120.30 -3.31 0.50 N 8 1 OE1 A GLU 405 ? ? CD A GLU 405 ? ? OE2 A GLU 405 ? ? 115.25 123.30 -8.05 1.20 N 9 1 CD A ARG 408 ? ? NE A ARG 408 ? ? CZ A ARG 408 ? ? 138.57 123.60 14.97 1.40 N 10 1 NE A ARG 408 ? ? CZ A ARG 408 ? ? NH1 A ARG 408 ? ? 124.22 120.30 3.92 0.50 N 11 1 NE A ARG 408 ? ? CZ A ARG 408 ? ? NH2 A ARG 408 ? ? 115.49 120.30 -4.81 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PRO _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 228 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -31.07 _pdbx_validate_torsion.psi 137.47 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 THR _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 227 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 228 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -60.19 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id THR _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 227 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -30.55 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 96 ? A MET 1 2 1 Y 1 A ARG 97 ? A ARG 2 3 1 Y 1 A GLY 98 ? A GLY 3 4 1 Y 1 A SER 99 ? A SER 4 5 1 Y 1 A HIS 100 ? A HIS 5 6 1 Y 1 A HIS 101 ? A HIS 6 7 1 Y 1 A HIS 102 ? A HIS 7 8 1 Y 1 A HIS 103 ? A HIS 8 9 1 Y 1 A HIS 104 ? A HIS 9 10 1 Y 1 A HIS 105 ? A HIS 10 11 1 Y 1 A GLY 106 ? A GLY 11 12 1 Y 1 A SER 107 ? A SER 12 13 1 Y 1 A GLY 108 ? A GLY 13 14 1 Y 1 A SER 109 ? A SER 14 15 1 Y 1 A MET 110 ? A MET 15 16 1 Y 1 A HIS 111 ? A HIS 16 17 1 Y 1 A GLN 112 ? A GLN 17 18 1 Y 1 A ARG 113 ? A ARG 18 19 1 Y 1 A GLN 114 ? A GLN 19 20 1 Y 1 A ASP 192 ? A ASP 97 21 1 Y 1 A GLN 193 ? A GLN 98 22 1 Y 1 A GLY 194 ? A GLY 99 23 1 Y 1 A GLU 428 ? A GLU 333 24 1 Y 1 A ARG 429 ? A ARG 334 25 1 Y 1 A LEU 430 ? A LEU 335 26 1 Y 1 A MET 431 ? A MET 336 27 1 Y 1 A PRO 432 ? A PRO 337 28 1 Y 1 A LYS 433 ? A LYS 338 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'YTTRIUM ION' Y1 3 water HOH #