HEADER INTRAMOLECULAR OXIDOREDUCTASE DEAMINASE 13-SEP-95 1DEA TITLE STRUCTURE AND CATALYTIC MECHANISM OF GLUCOSAMINE 6-PHOSPHATE DEAMINASE TITLE 2 FROM ESCHERICHIA COLI AT 2.1 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSAMINE 6-PHOSPHATE DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INTRAMOLECULAR OXIDOREDUCTASE DEAMINASE EXPDTA X-RAY DIFFRACTION AUTHOR G.OLIVA,M.R.M.FONTES,R.C.GARRATT,M.M.ALTAMIRANO,M.L.CALCAGNO, AUTHOR 2 E.HORJALES REVDAT 4 07-FEB-24 1DEA 1 REMARK REVDAT 3 13-JUL-11 1DEA 1 VERSN REVDAT 2 24-FEB-09 1DEA 1 VERSN REVDAT 1 29-JAN-96 1DEA 0 JRNL AUTH G.OLIVA,M.R.FONTES,R.C.GARRATT,M.M.ALTAMIRANO,M.L.CALCAGNO, JRNL AUTH 2 E.HORJALES JRNL TITL STRUCTURE AND CATALYTIC MECHANISM OF GLUCOSAMINE 6-PHOSPHATE JRNL TITL 2 DEAMINASE FROM ESCHERICHIA COLI AT 2.1 A RESOLUTION. JRNL REF STRUCTURE V. 3 1323 1995 JRNL REFN ISSN 0969-2126 JRNL PMID 8747459 JRNL DOI 10.1016/S0969-2126(01)00270-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.HORJALES,M.M.ALTAMIRANO,M.L.CALCAGNO,Z.DAUTER,K.WILSON, REMARK 1 AUTH 2 R.C.GARRATT,G.OLIVA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC STUDIES OF REMARK 1 TITL 2 GLUCOSAMINE-6-PHOSPHATE DEAMINASE FROM ESCHERICHIA COLI K12 REMARK 1 REF J.MOL.BIOL. V. 226 1283 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4184 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 348 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DEA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 62.85500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 36.28935 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 74.29000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 62.85500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 36.28935 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 74.29000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 62.85500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 36.28935 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 74.29000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 62.85500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 36.28935 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 74.29000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 62.85500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 36.28935 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 74.29000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 62.85500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 36.28935 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 74.29000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 72.57870 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 148.58000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 72.57870 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 148.58000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 72.57870 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 148.58000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 72.57870 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 148.58000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 72.57870 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 148.58000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 72.57870 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 148.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 19 NE2 HIS A 19 CD2 -0.067 REMARK 500 HIS A 56 NE2 HIS A 56 CD2 -0.076 REMARK 500 HIS A 65 NE2 HIS A 65 CD2 -0.069 REMARK 500 HIS A 81 NE2 HIS A 81 CD2 -0.072 REMARK 500 HIS A 90 NE2 HIS A 90 CD2 -0.072 REMARK 500 HIS A 96 NE2 HIS A 96 CD2 -0.070 REMARK 500 HIS A 132 NE2 HIS A 132 CD2 -0.074 REMARK 500 HIS A 164 NE2 HIS A 164 CD2 -0.073 REMARK 500 HIS A 222 NE2 HIS A 222 CD2 -0.071 REMARK 500 HIS A 232 NE2 HIS A 232 CD2 -0.071 REMARK 500 HIS B 19 NE2 HIS B 19 CD2 -0.068 REMARK 500 HIS B 56 NE2 HIS B 56 CD2 -0.068 REMARK 500 HIS B 65 NE2 HIS B 65 CD2 -0.069 REMARK 500 HIS B 90 NE2 HIS B 90 CD2 -0.077 REMARK 500 HIS B 96 NE2 HIS B 96 CD2 -0.069 REMARK 500 HIS B 143 NE2 HIS B 143 CD2 -0.068 REMARK 500 HIS B 164 NE2 HIS B 164 CD2 -0.068 REMARK 500 HIS B 222 NE2 HIS B 222 CD2 -0.077 REMARK 500 HIS B 232 NE2 HIS B 232 CD2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 15 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 15 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 172 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TRP A 224 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 224 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 THR B 8 N - CA - CB ANGL. DEV. = -12.2 DEGREES REMARK 500 TRP B 15 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP B 15 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 VAL B 61 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG B 91 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 91 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ASP B 95 CB - CG - OD1 ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B 156 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TRP B 224 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP B 224 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 MET B 237 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 ARG B 253 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 93 -59.67 -147.92 REMARK 500 ASP A 98 45.12 -97.70 REMARK 500 ALA A 145 -138.60 49.69 REMARK 500 PHE A 146 40.78 -106.42 REMARK 500 PHE A 174 51.98 -116.76 REMARK 500 ASP A 175 57.75 34.24 REMARK 500 PHE B 93 -62.73 -143.89 REMARK 500 ASP B 98 37.83 -96.26 REMARK 500 ASN B 110 33.38 -141.63 REMARK 500 ALA B 145 -141.98 51.36 REMARK 500 ALA B 150 23.20 82.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 268 DBREF 1DEA A 1 266 UNP P0A759 NAGB_ECOLI 1 266 DBREF 1DEA B 1 266 UNP P0A759 NAGB_ECOLI 1 266 SEQRES 1 A 266 MET ARG LEU ILE PRO LEU THR THR ALA GLU GLN VAL GLY SEQRES 2 A 266 LYS TRP ALA ALA ARG HIS ILE VAL ASN ARG ILE ASN ALA SEQRES 3 A 266 PHE LYS PRO THR ALA ASP ARG PRO PHE VAL LEU GLY LEU SEQRES 4 A 266 PRO THR GLY GLY THR PRO MET THR THR TYR LYS ALA LEU SEQRES 5 A 266 VAL GLU MET HIS LYS ALA GLY GLN VAL SER PHE LYS HIS SEQRES 6 A 266 VAL VAL THR PHE ASN MET ASP GLU TYR VAL GLY LEU PRO SEQRES 7 A 266 LYS GLU HIS PRO GLU SER TYR TYR SER PHE MET HIS ARG SEQRES 8 A 266 ASN PHE PHE ASP HIS VAL ASP ILE PRO ALA GLU ASN ILE SEQRES 9 A 266 ASN LEU LEU ASN GLY ASN ALA PRO ASP ILE ASP ALA GLU SEQRES 10 A 266 CYS ARG GLN TYR GLU GLU LYS ILE ARG SER TYR GLY LYS SEQRES 11 A 266 ILE HIS LEU PHE MET GLY GLY VAL GLY ASN ASP GLY HIS SEQRES 12 A 266 ILE ALA PHE ASN GLU PRO ALA SER SER LEU ALA SER ARG SEQRES 13 A 266 THR ARG ILE LYS THR LEU THR HIS ASP THR ARG VAL ALA SEQRES 14 A 266 ASN SER ARG PHE PHE ASP ASN ASP VAL ASN GLN VAL PRO SEQRES 15 A 266 LYS TYR ALA LEU THR VAL GLY VAL GLY THR LEU LEU ASP SEQRES 16 A 266 ALA GLU GLU VAL MET ILE LEU VAL LEU GLY SER GLN LYS SEQRES 17 A 266 ALA LEU ALA LEU GLN ALA ALA VAL GLU GLY CYS VAL ASN SEQRES 18 A 266 HIS MET TRP THR ILE SER CYS LEU GLN LEU HIS PRO LYS SEQRES 19 A 266 ALA ILE MET VAL CYS ASP GLU PRO SER THR MET GLU LEU SEQRES 20 A 266 LYS VAL LYS THR LEU ARG TYR PHE ASN GLU LEU GLU ALA SEQRES 21 A 266 GLU ASN ILE LYS GLY LEU SEQRES 1 B 266 MET ARG LEU ILE PRO LEU THR THR ALA GLU GLN VAL GLY SEQRES 2 B 266 LYS TRP ALA ALA ARG HIS ILE VAL ASN ARG ILE ASN ALA SEQRES 3 B 266 PHE LYS PRO THR ALA ASP ARG PRO PHE VAL LEU GLY LEU SEQRES 4 B 266 PRO THR GLY GLY THR PRO MET THR THR TYR LYS ALA LEU SEQRES 5 B 266 VAL GLU MET HIS LYS ALA GLY GLN VAL SER PHE LYS HIS SEQRES 6 B 266 VAL VAL THR PHE ASN MET ASP GLU TYR VAL GLY LEU PRO SEQRES 7 B 266 LYS GLU HIS PRO GLU SER TYR TYR SER PHE MET HIS ARG SEQRES 8 B 266 ASN PHE PHE ASP HIS VAL ASP ILE PRO ALA GLU ASN ILE SEQRES 9 B 266 ASN LEU LEU ASN GLY ASN ALA PRO ASP ILE ASP ALA GLU SEQRES 10 B 266 CYS ARG GLN TYR GLU GLU LYS ILE ARG SER TYR GLY LYS SEQRES 11 B 266 ILE HIS LEU PHE MET GLY GLY VAL GLY ASN ASP GLY HIS SEQRES 12 B 266 ILE ALA PHE ASN GLU PRO ALA SER SER LEU ALA SER ARG SEQRES 13 B 266 THR ARG ILE LYS THR LEU THR HIS ASP THR ARG VAL ALA SEQRES 14 B 266 ASN SER ARG PHE PHE ASP ASN ASP VAL ASN GLN VAL PRO SEQRES 15 B 266 LYS TYR ALA LEU THR VAL GLY VAL GLY THR LEU LEU ASP SEQRES 16 B 266 ALA GLU GLU VAL MET ILE LEU VAL LEU GLY SER GLN LYS SEQRES 17 B 266 ALA LEU ALA LEU GLN ALA ALA VAL GLU GLY CYS VAL ASN SEQRES 18 B 266 HIS MET TRP THR ILE SER CYS LEU GLN LEU HIS PRO LYS SEQRES 19 B 266 ALA ILE MET VAL CYS ASP GLU PRO SER THR MET GLU LEU SEQRES 20 B 266 LYS VAL LYS THR LEU ARG TYR PHE ASN GLU LEU GLU ALA SEQRES 21 B 266 GLU ASN ILE LYS GLY LEU HET PO4 A 267 5 HET PO4 A 268 5 HET PO4 B 267 5 HET PO4 B 268 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 4(O4 P 3-) FORMUL 7 HOH *348(H2 O) HELIX 1 1 ALA A 9 PHE A 27 1 19 HELIX 2 2 THR A 44 LYS A 57 5 14 HELIX 3 3 TYR A 85 ASN A 92 1 8 HELIX 4 4 PHE A 94 HIS A 96 5 3 HELIX 5 5 ALA A 101 ASN A 103 5 3 HELIX 6 6 ILE A 114 TYR A 128 1 15 HELIX 7 7 HIS A 164 PHE A 174 1 11 HELIX 8 8 VAL A 178 GLN A 180 5 3 HELIX 9 9 VAL A 190 LEU A 194 1 5 HELIX 10 10 SER A 206 GLU A 217 5 12 HELIX 11 11 THR A 225 LEU A 231 5 7 HELIX 12 12 PRO A 242 THR A 244 5 3 HELIX 13 13 VAL A 249 GLU A 259 1 11 HELIX 14 14 GLU A 261 ILE A 263 5 3 HELIX 15 15 ALA B 9 PHE B 27 1 19 HELIX 16 16 THR B 44 LYS B 57 5 14 HELIX 17 17 TYR B 85 ASN B 92 1 8 HELIX 18 18 PHE B 94 HIS B 96 5 3 HELIX 19 19 ALA B 101 ASN B 103 5 3 HELIX 20 20 ILE B 114 TYR B 128 1 15 HELIX 21 21 HIS B 164 PHE B 174 1 11 HELIX 22 22 VAL B 178 GLN B 180 5 3 HELIX 23 23 VAL B 190 LEU B 194 1 5 HELIX 24 24 SER B 206 GLU B 217 5 12 HELIX 25 25 THR B 225 LEU B 231 5 7 HELIX 26 26 PRO B 242 THR B 244 5 3 HELIX 27 27 VAL B 249 LYS B 264 1 16 SHEET 1 A 4 ARG A 2 PRO A 5 0 SHEET 2 A 4 ALA A 235 CYS A 239 1 N MET A 237 O ARG A 2 SHEET 3 A 4 VAL A 199 VAL A 203 1 N VAL A 199 O ILE A 236 SHEET 4 A 4 PHE A 134 GLY A 136 1 N PHE A 134 O MET A 200 SHEET 1 B 2 PHE A 35 LEU A 39 0 SHEET 2 B 2 VAL A 66 ASN A 70 1 N VAL A 67 O PHE A 35 SHEET 1 C 3 ASP A 72 TYR A 74 0 SHEET 2 C 3 TYR A 184 THR A 187 -1 N LEU A 186 O GLU A 73 SHEET 3 C 3 ARG A 158 THR A 161 -1 N LYS A 160 O ALA A 185 SHEET 1 D 4 ARG B 2 PRO B 5 0 SHEET 2 D 4 ALA B 235 CYS B 239 1 N MET B 237 O ARG B 2 SHEET 3 D 4 VAL B 199 VAL B 203 1 N VAL B 199 O ILE B 236 SHEET 4 D 4 PHE B 134 GLY B 136 1 N PHE B 134 O MET B 200 SHEET 1 E 2 PHE B 35 LEU B 39 0 SHEET 2 E 2 VAL B 66 ASN B 70 1 N VAL B 67 O PHE B 35 SHEET 1 F 3 ASP B 72 TYR B 74 0 SHEET 2 F 3 TYR B 184 THR B 187 -1 N LEU B 186 O GLU B 73 SHEET 3 F 3 ARG B 158 THR B 161 -1 N LYS B 160 O ALA B 185 SITE 1 AC1 8 MET A 1 SER A 151 SER A 152 ARG A 158 SITE 2 AC1 8 LYS A 160 HOH A 338 HOH A 362 HOH A 364 SITE 1 AC2 8 GLY A 42 GLY A 43 THR A 44 ARG A 172 SITE 2 AC2 8 LYS A 208 HOH A 323 HOH A 348 HOH A 386 SITE 1 AC3 9 MET B 1 SER B 151 SER B 152 ARG B 158 SITE 2 AC3 9 LYS B 160 HOH B 299 HOH B 352 HOH B 402 SITE 3 AC3 9 HOH B 406 SITE 1 AC4 9 GLY B 42 GLY B 43 THR B 44 ARG B 172 SITE 2 AC4 9 LYS B 208 HOH B 328 HOH B 332 HOH B 377 SITE 3 AC4 9 HOH B 395 CRYST1 125.710 125.710 222.870 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007955 0.004593 0.000000 0.00000 SCALE2 0.000000 0.009185 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004487 0.00000