HEADER VIRAL PROTEIN/VIRAL PROTEIN INHIBITOR 18-NOV-99 1DF9 OBSLTE 09-FEB-10 1DF9 TITLE DENGUE VIRUS NS3-PROTEASE COMPLEXED WITH MUNG-BEAN BOWMAN-BIRK TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONSTRUCTURAL PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NS3 PROTEASE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BOWMAN-BIRK TYPE TRYPSIN INHIBITOR; COMPND 8 CHAIN: C; COMPND 9 FRAGMENT: MBBBI SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2 JAMAICA/1409/1983; SOURCE 3 ORGANISM_TAXID: 11064; SOURCE 4 STRAIN: JAMAICA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE MRF; SOURCE 8 OTHER_DETAILS: SEROTYPE 2; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: VIGNA RADIATA VAR. RADIATA; SOURCE 11 ORGANISM_COMMON: MUNG BEAN; SOURCE 12 ORGANISM_TAXID: 3916; SOURCE 13 STRAIN: VAR. RADIATA; SOURCE 14 OTHER_DETAILS: SEEDS KEYWDS BETA BARRELS, CATALYTIC TRIAD, INHIBITOR COMPLEX, MULTIPLE KEYWDS 2 CONFORMATION, VIRUS/VIRAL PROTEIN/INHIBITOR, VIRAL PROTEIN-VIRAL KEYWDS 3 PROTEIN INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.M.KRISHNA MURTHY,K.JUDGE,L.DELUCAS,R.PADMANABHAN REVDAT 5 04-APR-12 1DF9 1 REMARK REVDAT 4 09-FEB-10 1DF9 1 OBSLTE REVDAT 3 24-FEB-09 1DF9 1 VERSN REVDAT 2 01-APR-03 1DF9 1 JRNL REVDAT 1 23-AUG-00 1DF9 0 JRNL AUTH H.M.MURTHY,K.JUDGE,L.DELUCAS,R.PADMANABHAN JRNL TITL RETRACTED: CRYSTAL STRUCTURE OF DENGUE VIRUS NS3 PROTEASE IN JRNL TITL 2 COMPLEX WITH A BOWMAN-BIRK INHIBITOR: IMPLICATIONS FOR JRNL TITL 3 FLAVIVIRAL POLYPROTEIN PROCESSING AND DRUG DESIGN. JRNL REF J.MOL.BIOL. V. 301 759 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10966782 JRNL DOI 10.1006/JMBI.2000.3924 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 41212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : CHOSEN AT RANDOM THROUGOUT REMARK 3 RESOLUTION RANGE. REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4121 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3210 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 1.70 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED SLOW COOLING, SIMULATED ANNEALING REMARK 3 PROCEDURE REMARK 4 REMARK 4 1DF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 THE ENTRY IS OBSOLETED DUE TO PAPER RETRACTION REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-DEC-99. REMARK 100 THE RCSB ID CODE IS RCSB010036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 120.0 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.52974 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XGEN REMARK 200 DATA SCALING SOFTWARE : XGEN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41212 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.15600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, NACL, LICL, NICL2, BETA REMARK 280 OCTYL GLUCOSIDE, PH 7.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 20K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.39500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.39500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONSISTS OF AN INHIBITOR BRIDGED REMARK 300 PROTEASE DIMER, RELATED BY A NON-CRYSTALLOGRAPHIC REMARK 300 TWO FOLD SCREW AXIS. COORDINATES FOR BOTH ARE GIVEN REMARK 300 AS THERE ARE SIGNIFICANT DEPARTURES FROM EXACT SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 ILE A 182 REMARK 465 PHE A 183 REMARK 465 ARG A 184 REMARK 465 LYS A 185 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 ALA B 301 REMARK 465 GLY B 302 REMARK 465 VAL B 303 REMARK 465 LEU B 304 REMARK 465 ILE B 482 REMARK 465 PHE B 483 REMARK 465 ARG B 484 REMARK 465 LYS B 485 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C 572 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG1 VAL B 426 O HOH B 965 0.36 REMARK 500 CD1 TYR B 323 O HOH B 759 0.54 REMARK 500 CG2 VAL B 462 O HOH B 1027 0.54 REMARK 500 CG LEU B 385 O HOH B 983 0.55 REMARK 500 CD2 LEU A 58 O HOH A 991 0.56 REMARK 500 SG CYS A 79 O HOH A 946 0.58 REMARK 500 CB GLU A 19 O HOH A 773 0.60 REMARK 500 CG2 VAL A 57 O HOH A 764 0.68 REMARK 500 CD1 ILE A 25 O HOH A 746 0.69 REMARK 500 SG CYS C 536 O HOH C 945 0.70 REMARK 500 CG TYR B 450 O HOH B 878 0.72 REMARK 500 CB LYS C 520 O HOH C 1019 0.77 REMARK 500 CG PRO A 12 O HOH A 736 0.78 REMARK 500 CB TRP B 389 O HOH B 923 0.78 REMARK 500 CB LYS C 541 O HOH C 865 0.79 REMARK 500 CG2 ILE A 140 O HOH A 921 0.80 REMARK 500 CD1 LEU B 428 O HOH B 1031 0.83 REMARK 500 CG2 ILE B 325 O HOH B 908 0.89 REMARK 500 CB PHE B 416 O HOH B 952 0.97 REMARK 500 CG ARG C 532 O HOH C 703 1.00 REMARK 500 SG CYS C 540 O HOH C 964 1.01 REMARK 500 CB CYS C 562 O HOH C 985 1.02 REMARK 500 CG LYS C 520 O HOH C 1019 1.02 REMARK 500 CD2 LEU B 385 O HOH B 983 1.05 REMARK 500 SG CYS C 555 O HOH C 964 1.06 REMARK 500 CB LYS A 15 O HOH A 989 1.07 REMARK 500 CB PRO A 102 O HOH A 847 1.07 REMARK 500 CB VAL A 57 O HOH A 764 1.07 REMARK 500 SG CYS C 562 O HOH C 985 1.08 REMARK 500 CZ2 TRP A 50 O HOH A 708 1.08 REMARK 500 CG1 VAL A 77 O HOH A 872 1.09 REMARK 500 CG1 ILE A 139 O HOH A 882 1.09 REMARK 500 CG1 VAL A 7 O HOH A 816 1.09 REMARK 500 CB TYR B 450 O HOH B 878 1.13 REMARK 500 CD LYS A 143 O HOH A 892 1.14 REMARK 500 CG TRP B 305 O HOH B 1009 1.14 REMARK 500 CG LYS A 104 O HOH A 719 1.18 REMARK 500 CG LEU A 58 O HOH A 991 1.18 REMARK 500 CG1 ILE B 440 O HOH B 970 1.21 REMARK 500 CG2 THR C 558 O HOH C 795 1.23 REMARK 500 CB HIS A 60 O HOH A 1017 1.23 REMARK 500 CG2 THR B 345 O HOH B 836 1.25 REMARK 500 CG GLU A 88 O HOH A 778 1.25 REMARK 500 CG LYS B 445 O HOH B 770 1.26 REMARK 500 CD1 ILE A 30 O HOH A 902 1.27 REMARK 500 CB ASP A 20 O HOH A 783 1.28 REMARK 500 CE3 TRP A 69 O HOH A 980 1.30 REMARK 500 CB LEU C 556 O HOH C 960 1.35 REMARK 500 CD LYS A 63 O HOH A 971 1.35 REMARK 500 SG CYS C 512 O HOH C 919 1.36 REMARK 500 REMARK 500 THIS ENTRY HAS 192 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS C 520 C LYS C 520 O 0.166 REMARK 500 ARG C 547 C ARG C 547 O 0.202 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 432 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 PRO B 432 C - N - CD ANGL. DEV. = -21.0 DEGREES REMARK 500 ARG C 547 O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 26 75.84 37.68 REMARK 500 GLN A 27 -158.83 -159.90 REMARK 500 LYS A 28 93.65 67.66 REMARK 500 TYR A 33 22.95 -74.78 REMARK 500 SER A 34 -43.84 172.54 REMARK 500 ALA A 56 107.78 -59.28 REMARK 500 PRO A 106 -170.98 -59.06 REMARK 500 GLN A 110 77.59 49.55 REMARK 500 ARG A 157 -22.60 70.38 REMARK 500 ASP A 174 -62.29 -93.54 REMARK 500 PRO A 176 86.98 -63.91 REMARK 500 LYS B 326 76.17 37.68 REMARK 500 GLN B 327 -158.85 -160.20 REMARK 500 LYS B 328 93.04 67.71 REMARK 500 TYR B 333 36.73 -78.74 REMARK 500 SER B 334 -37.69 155.28 REMARK 500 ARG B 354 54.30 31.75 REMARK 500 PRO B 406 -171.15 -59.21 REMARK 500 GLN B 410 77.52 49.40 REMARK 500 ASP B 429 107.29 162.62 REMARK 500 PHE B 430 41.03 -86.54 REMARK 500 SER B 431 162.29 59.86 REMARK 500 ARG B 457 -22.28 70.28 REMARK 500 ASP B 474 -62.23 -93.41 REMARK 500 PRO B 476 86.85 -63.77 REMARK 500 LYS C 520 32.09 -75.77 REMARK 500 CYS C 528 -145.03 -130.69 REMARK 500 ALA C 529 -151.82 -132.52 REMARK 500 LEU C 533 59.94 -13.29 REMARK 500 ASN C 534 -80.99 -148.44 REMARK 500 ARG C 547 38.94 -57.19 REMARK 500 SER C 568 -52.19 174.74 REMARK 500 MET C 569 -44.45 109.23 REMARK 500 ASP C 570 -131.22 -149.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS C 520 -19.10 REMARK 500 ARG C 547 17.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ARG C 547 23.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 1DF9 A 1 185 UNP P14340 POLG_DEN2N 1476 1660 DBREF 1DF9 B 301 485 UNP P14340 POLG_DEN2N 1476 1660 DBREF 1DF9 C 501 572 UNP P01062 IBB_PHAAU 1 72 SEQADV 1DF9 GLN C 525 UNP P01062 GLU 25 CONFLICT SEQRES 1 A 191 HIS HIS HIS HIS HIS HIS ALA GLY VAL LEU TRP ASP VAL SEQRES 2 A 191 PRO SER PRO PRO PRO VAL GLY LYS ALA GLU LEU GLU ASP SEQRES 3 A 191 GLY ALA TYR ARG ILE LYS GLN LYS GLY ILE LEU GLY TYR SEQRES 4 A 191 SER GLN ILE GLY ALA GLY VAL TYR LYS GLU GLY THR PHE SEQRES 5 A 191 HIS THR MET TRP HIS VAL THR ARG GLY ALA VAL LEU MET SEQRES 6 A 191 HIS LYS GLY LYS ARG ILE GLU PRO SER TRP ALA ASP VAL SEQRES 7 A 191 LYS LYS ASP LEU VAL SER CYS GLY GLY GLY TRP LYS LEU SEQRES 8 A 191 GLU GLY GLU TRP LYS GLU GLY GLU GLU VAL GLN VAL LEU SEQRES 9 A 191 ALA LEU GLU PRO GLY LYS ASN PRO ARG ALA VAL GLN THR SEQRES 10 A 191 LYS PRO GLY LEU PHE LYS THR ASN ALA GLY THR ILE GLY SEQRES 11 A 191 ALA VAL SER LEU ASP PHE SER PRO GLY THR SER GLY SER SEQRES 12 A 191 PRO ILE ILE ASP LYS LYS GLY LYS VAL VAL GLY ILE TYR SEQRES 13 A 191 GLY ASN GLY VAL VAL THR ARG SER GLY ALA TYR VAL SER SEQRES 14 A 191 ALA ILE ALA GLN THR GLU LYS SER ILE GLU ASP ASN PRO SEQRES 15 A 191 GLU ILE GLU ASP ASP ILE PHE ARG LYS SEQRES 1 B 191 HIS HIS HIS HIS HIS HIS ALA GLY VAL LEU TRP ASP VAL SEQRES 2 B 191 PRO SER PRO PRO PRO VAL GLY LYS ALA GLU LEU GLU ASP SEQRES 3 B 191 GLY ALA TYR ARG ILE LYS GLN LYS GLY ILE LEU GLY TYR SEQRES 4 B 191 SER GLN ILE GLY ALA GLY VAL TYR LYS GLU GLY THR PHE SEQRES 5 B 191 HIS THR MET TRP HIS VAL THR ARG GLY ALA VAL LEU MET SEQRES 6 B 191 HIS LYS GLY LYS ARG ILE GLU PRO SER TRP ALA ASP VAL SEQRES 7 B 191 LYS LYS ASP LEU VAL SER CYS GLY GLY GLY TRP LYS LEU SEQRES 8 B 191 GLU GLY GLU TRP LYS GLU GLY GLU GLU VAL GLN VAL LEU SEQRES 9 B 191 ALA LEU GLU PRO GLY LYS ASN PRO ARG ALA VAL GLN THR SEQRES 10 B 191 LYS PRO GLY LEU PHE LYS THR ASN ALA GLY THR ILE GLY SEQRES 11 B 191 ALA VAL SER LEU ASP PHE SER PRO GLY THR SER GLY SER SEQRES 12 B 191 PRO ILE ILE ASP LYS LYS GLY LYS VAL VAL GLY ILE TYR SEQRES 13 B 191 GLY ASN GLY VAL VAL THR ARG SER GLY ALA TYR VAL SER SEQRES 14 B 191 ALA ILE ALA GLN THR GLU LYS SER ILE GLU ASP ASN PRO SEQRES 15 B 191 GLU ILE GLU ASP ASP ILE PHE ARG LYS SEQRES 1 C 72 SER HIS ASP GLU PRO SER GLU SER SER GLU PRO CYS CYS SEQRES 2 C 72 ASP SER CYS ASP CYS THR LYS SER ILE PRO PRO GLN CYS SEQRES 3 C 72 HIS CYS ALA ASN ILE ARG LEU ASN SER CYS HIS SER ALA SEQRES 4 C 72 CYS LYS SER CYS ILE CYS THR ARG SER MET PRO GLY LYS SEQRES 5 C 72 CYS ARG CYS LEU ASP THR ASP ASP PHE CYS TYR LYS PRO SEQRES 6 C 72 CYS GLU SER MET ASP LYS ASP FORMUL 4 HOH *331(H2 O) HELIX 1 1 SER A 9 GLU A 17 1 9 HELIX 2 2 MET A 49 ARG A 54 1 6 HELIX 3 3 THR A 168 ILE A 172 1 5 HELIX 4 4 SER B 309 GLU B 317 1 9 HELIX 5 5 THR B 468 ILE B 472 1 5 SHEET 1 A 2 VAL A 40 LYS A 42 0 SHEET 2 A 2 THR A 45 HIS A 47 -1 O THR A 45 N LYS A 42 SHEET 1 B 4 VAL A 95 VAL A 97 0 SHEET 2 B 4 PRO A 138 ASP A 141 -1 O ILE A 140 N GLN A 96 SHEET 3 B 4 VAL A 146 VAL A 154 -1 N VAL A 147 O ILE A 139 SHEET 4 B 4 VAL A 162 GLN A 167 -1 N VAL A 162 O VAL A 154 SHEET 1 C 2 LYS A 117 THR A 118 0 SHEET 2 C 2 THR A 122 ILE A 123 -1 O ILE A 123 N LYS A 117 SHEET 1 D 2 VAL B 340 LYS B 342 0 SHEET 2 D 2 THR B 345 HIS B 347 -1 O THR B 345 N LYS B 342 SHEET 1 E 2 VAL B 395 VAL B 397 0 SHEET 2 E 2 ILE B 439 ASP B 441 -1 O ILE B 440 N GLN B 396 SHEET 1 F 2 LYS B 417 THR B 418 0 SHEET 2 F 2 THR B 422 ILE B 423 -1 O ILE B 423 N LYS B 417 SHEET 1 G 2 GLY B 448 VAL B 454 0 SHEET 2 G 2 VAL B 462 GLN B 467 -1 N VAL B 462 O VAL B 454 SHEET 1 H 2 CYS C 543 CYS C 545 0 SHEET 2 H 2 CYS C 553 CYS C 555 -1 O ARG C 554 N ILE C 544 SSBOND 1 CYS C 512 CYS C 566 1555 1555 2.03 SSBOND 2 CYS C 513 CYS C 528 1555 1555 2.03 SSBOND 3 CYS C 516 CYS C 562 1555 1555 2.03 SSBOND 4 CYS C 518 CYS C 526 1555 1555 2.03 SSBOND 5 CYS C 536 CYS C 543 1555 1555 2.03 SSBOND 6 CYS C 540 CYS C 555 1555 1555 2.03 SSBOND 7 CYS C 545 CYS C 553 1555 1555 2.03 CISPEP 1 ILE C 522 PRO C 523 0 -0.83 CISPEP 2 MET C 549 PRO C 550 0 0.35 CRYST1 75.510 90.150 98.790 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013243 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010122 0.00000