HEADER IMMUNOGLOBULIN 27-MAR-92 1DFB TITLE STRUCTURE OF A HUMAN MONOCLONAL ANTIBODY FAB FRAGMENT AGAINST GP41 OF TITLE 2 HUMAN IMMUNODEFICIENCY VIRUS TYPE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG1-KAPPA 3D6 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG1-KAPPA 3D6 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR X.M.HE,F.RUEKER,E.CASALE,D.C.CARTER REVDAT 6 16-OCT-24 1DFB 1 REMARK REVDAT 5 05-JUN-24 1DFB 1 SEQADV REVDAT 4 25-AUG-09 1DFB 1 SOURCE REVDAT 3 24-FEB-09 1DFB 1 VERSN REVDAT 2 01-APR-03 1DFB 1 JRNL REVDAT 1 31-OCT-93 1DFB 0 JRNL AUTH X.M.HE,F.RUKER,E.CASALE,D.C.CARTER JRNL TITL STRUCTURE OF A HUMAN MONOCLONAL ANTIBODY FAB FRAGMENT JRNL TITL 2 AGAINST GP41 OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 89 7154 1992 JRNL REFN ISSN 0027-8424 JRNL PMID 1496010 JRNL DOI 10.1073/PNAS.89.15.7154 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.CASALE,E.WENISCH,X.-M.HE,P.G.RIGHETTI,R.S.SNYDER, REMARK 1 AUTH 2 A.JUNGBAUER,C.TAUER,F.RUKER,D.C.CARTER REMARK 1 TITL CRYSTALLIZATION OF THE FAB FROM A HUMAN MONOCLONAL ANTIBODY REMARK 1 TITL 2 AGAINST GP41 OF HUMAN IMMUNODEFICIENCY VIRUS TYPE I REMARK 1 REF J.MOL.BIOL. V. 216 511 1990 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3354 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 4.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DFB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172764. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.50000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.50000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 187 NE2 HIS L 187 CD2 -0.074 REMARK 500 HIS L 196 NE2 HIS L 196 CD2 -0.075 REMARK 500 HIS H 35 NE2 HIS H 35 CD2 -0.071 REMARK 500 HIS H 213 NE2 HIS H 213 CD2 -0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET L 4 CA - CB - CG ANGL. DEV. = 11.0 DEGREES REMARK 500 SER L 7 N - CA - CB ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG L 18 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 ARG L 24 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ILE L 29 CA - CB - CG2 ANGL. DEV. = 12.6 DEGREES REMARK 500 TRP L 32 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP L 32 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TRP L 35 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP L 35 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 LEU L 46 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 TYR L 86 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR L 91 CB - CG - CD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG L 106 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 VAL L 131 CG1 - CB - CG2 ANGL. DEV. = -14.7 DEGREES REMARK 500 TRP L 146 CE2 - CD2 - CG ANGL. DEV. = -5.1 DEGREES REMARK 500 ALA L 151 CA - C - N ANGL. DEV. = 15.2 DEGREES REMARK 500 ALA L 151 O - C - N ANGL. DEV. = -9.9 DEGREES REMARK 500 LEU L 152 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 GLU H 6 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 ARG H 19 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG H 19 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TRP H 36 CD1 - CG - CD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 TRP H 36 CG - CD1 - NE1 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP H 36 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP H 47 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP H 47 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TRP H 53 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 SER H 55 N - CA - CB ANGL. DEV. = -9.0 DEGREES REMARK 500 TYR H 60 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG H 72 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG H 72 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 LEU H 79 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 MET H 91 CA - CB - CG ANGL. DEV. = -10.2 DEGREES REMARK 500 TYR H 95 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG H 100 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG H 100 N - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 TYR H 102 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 TYR H 102 CA - C - N ANGL. DEV. = -13.4 DEGREES REMARK 500 TYR H 108 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP H 116 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP H 116 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 VAL H 122 CG1 - CB - CG2 ANGL. DEV. = -11.1 DEGREES REMARK 500 LEU H 137 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 PRO H 139 CA - C - N ANGL. DEV. = -18.4 DEGREES REMARK 500 PRO H 139 O - C - N ANGL. DEV. = 12.4 DEGREES REMARK 500 THR H 148 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 TRP H 167 CD1 - CG - CD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 TRP H 167 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 VAL H 176 CG1 - CB - CG2 ANGL. DEV. = -10.1 DEGREES REMARK 500 LEU H 191 CA - CB - CG ANGL. DEV. = 19.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 26 -3.19 -49.32 REMARK 500 SER L 30 -112.17 41.50 REMARK 500 ALA L 51 -34.88 51.30 REMARK 500 SER L 60 -9.61 -51.25 REMARK 500 PRO L 80 12.66 -61.06 REMARK 500 ASN L 136 84.78 56.31 REMARK 500 ASP L 149 120.81 67.43 REMARK 500 ASN L 150 -70.37 59.97 REMARK 500 ALA L 151 39.41 -170.20 REMARK 500 ASN L 156 70.74 175.02 REMARK 500 LYS L 167 -66.06 -95.12 REMARK 500 GLU L 185 27.87 -79.30 REMARK 500 LYS L 188 -59.23 -143.86 REMARK 500 GLU L 211 78.21 -69.02 REMARK 500 VAL H 2 103.45 -171.57 REMARK 500 SER H 55 6.93 56.10 REMARK 500 ALA H 92 -178.89 -174.97 REMARK 500 ASP H 104 128.81 -170.05 REMARK 500 SER H 105 -140.83 -142.43 REMARK 500 SER H 140 179.21 139.27 REMARK 500 SER H 141 -33.07 -170.70 REMARK 500 SER H 143 -12.55 138.54 REMARK 500 THR H 144 -81.28 -155.34 REMARK 500 SER H 145 121.19 63.12 REMARK 500 ASP H 157 70.65 64.84 REMARK 500 SER H 169 42.97 38.55 REMARK 500 SER H 185 -31.81 -30.84 REMARK 500 SER H 186 85.15 -162.37 REMARK 500 LYS H 227 -155.19 -85.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER L 7 PRO L 8 -31.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR L 94 0.09 SIDE CHAIN REMARK 500 TYR H 102 0.09 SIDE CHAIN REMARK 500 TYR H 108 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1DFB L 3 212 GB 468243 AAA87674 3 213 DBREF 1DFB H 127 229 UNP P01857 GC1_HUMAN 1 103 SEQADV 1DFB ARG L 31 GB 468243 PRO 31 CONFLICT SEQADV 1DFB ALA L 34 GB 468243 PRO 34 CONFLICT SEQADV 1DFB VAL L 43 GB 468243 ALA 43 CONFLICT SEQADV 1DFB SER L 76 GB 468243 THR 76 CONFLICT SEQADV 1DFB TYR L 87 GB 468243 PHE 87 CONFLICT SEQADV 1DFB GLN L 90 GB 468243 HIS 90 CONFLICT SEQADV 1DFB L GB 468243 ARG 93 DELETION SEQADV 1DFB SER L 93 GB 468243 PRO 94 CONFLICT SEQADV 1DFB TYR L 94 GB 468243 TRP 95 CONFLICT SEQADV 1DFB SER L 95 GB 468243 THR 96 CONFLICT SEQADV 1DFB PRO L 98 GB 468243 GLN 99 CONFLICT SEQADV 1DFB ASP L 103 GB 468243 GLU 104 CONFLICT SEQRES 1 L 212 ASP ILE GLN MET THR GLN SER PRO SER THR LEU SER ALA SEQRES 2 L 212 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 212 GLN SER ILE SER ARG TRP LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 212 PRO GLY LYS VAL PRO LYS LEU LEU ILE TYR LYS ALA SER SEQRES 5 L 212 SER LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 212 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 212 GLN PRO ASP ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 L 212 ASN SER TYR SER PHE GLY PRO GLY THR LYS VAL ASP ILE SEQRES 9 L 212 LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE PRO SEQRES 10 L 212 PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER VAL SEQRES 11 L 212 VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA LYS SEQRES 12 L 212 VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY ASN SEQRES 13 L 212 SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SER SEQRES 14 L 212 THR TYR SER LEU SER SER THR LEU THR LEU SER LYS ALA SEQRES 15 L 212 ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL THR SEQRES 16 L 212 HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE ASN SEQRES 17 L 212 ARG GLY GLU CYS SEQRES 1 H 229 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 229 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 229 PHE THR PHE ASN ASP TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER GLY ILE SER SEQRES 5 H 229 TRP ASP SER SER SER ILE GLY TYR ALA ASP SER VAL LYS SEQRES 6 H 229 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 229 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP MET SEQRES 8 H 229 ALA LEU TYR TYR CYS VAL LYS GLY ARG ASP TYR TYR ASP SEQRES 9 H 229 SER GLY GLY TYR PHE THR VAL ALA PHE ASP ILE TRP GLY SEQRES 10 H 229 GLN GLY THR MET VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 229 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 229 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 229 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 229 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 229 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 229 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 229 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 229 LYS LYS VAL GLU PRO LYS SER CYS HELIX 1 1 SER L 119 SER L 125 1 7 HELIX 2 2 LYS L 181 GLU L 185 1 5 HELIX 3 3 THR H 28 TYR H 32 5 5 HELIX 4 4 ASP H 62 LYS H 65 5 4 HELIX 5 5 ARG H 87 MET H 91 5 5 HELIX 6 6 PRO H 198 LEU H 202 5 5 HELIX 7 7 LYS H 214 ASN H 217 5 4 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 ALA L 25 -1 N THR L 22 O SER L 7 SHEET 3 A 4 GLU L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 A 4 PHE L 62 GLY L 66 -1 N SER L 63 O THR L 74 SHEET 1 B 5 THR L 10 ALA L 13 0 SHEET 2 B 5 THR L 100 ILE L 104 1 O LYS L 101 N LEU L 11 SHEET 3 B 5 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 100 SHEET 4 B 5 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 B 5 LYS L 45 ILE L 48 -1 N LYS L 45 O GLN L 37 SHEET 1 C 4 SER L 112 PHE L 116 0 SHEET 2 C 4 THR L 127 PHE L 137 -1 O VAL L 131 N PHE L 116 SHEET 3 C 4 TYR L 171 SER L 180 -1 O TYR L 171 N PHE L 137 SHEET 4 C 4 SER L 157 VAL L 161 -1 O GLN L 158 N THR L 176 SHEET 1 D 4 LEU L 152 GLN L 153 0 SHEET 2 D 4 ALA L 142 VAL L 148 -1 N VAL L 148 O LEU L 152 SHEET 3 D 4 VAL L 189 HIS L 196 -1 N ALA L 191 O LYS L 147 SHEET 4 D 4 VAL L 203 ASN L 208 -1 O VAL L 203 N VAL L 194 SHEET 1 E 4 GLN H 3 SER H 7 0 SHEET 2 E 4 LEU H 18 SER H 25 -1 N SER H 21 O SER H 7 SHEET 3 E 4 SER H 78 MET H 83 -1 N LEU H 79 O CYS H 22 SHEET 4 E 4 PHE H 68 ASP H 73 -1 O THR H 69 N GLN H 82 SHEET 1 F 5 ILE H 58 TYR H 60 0 SHEET 2 F 5 LEU H 45 ILE H 51 -1 O GLY H 50 N GLY H 59 SHEET 3 F 5 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 F 5 ALA H 92 ARG H 100 -1 N LEU H 93 O GLN H 39 SHEET 5 F 5 ALA H 112 TRP H 116 -1 O ALA H 112 N ARG H 100 SHEET 1 G 6 ILE H 58 TYR H 60 0 SHEET 2 G 6 LEU H 45 ILE H 51 -1 O GLY H 50 N GLY H 59 SHEET 3 G 6 MET H 34 GLN H 39 -1 O MET H 34 N ILE H 51 SHEET 4 G 6 ALA H 92 ARG H 100 -1 N LEU H 93 O GLN H 39 SHEET 5 G 6 THR H 120 VAL H 124 -1 O THR H 120 N TYR H 94 SHEET 6 G 6 GLY H 10 VAL H 12 1 O GLY H 10 N THR H 123 SHEET 1 H 4 SER H 133 LEU H 137 0 SHEET 2 H 4 ALA H 149 TYR H 158 -1 N GLY H 152 O LEU H 137 SHEET 3 H 4 TYR H 189 VAL H 197 -1 N TYR H 189 O TYR H 158 SHEET 4 H 4 HIS H 177 THR H 178 -1 O HIS H 177 N VAL H 194 SHEET 1 I 4 SER H 133 LEU H 137 0 SHEET 2 I 4 ALA H 149 TYR H 158 -1 N GLY H 152 O LEU H 137 SHEET 3 I 4 TYR H 189 VAL H 197 -1 N TYR H 189 O TYR H 158 SHEET 4 I 4 VAL H 182 LEU H 183 -1 N VAL H 182 O SER H 190 SHEET 1 J 3 THR H 164 TRP H 167 0 SHEET 2 J 3 TYR H 207 HIS H 213 -1 N ASN H 210 O SER H 166 SHEET 3 J 3 THR H 218 VAL H 224 -1 O THR H 218 N HIS H 213 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.01 SSBOND 2 CYS L 132 CYS L 192 1555 1555 2.04 SSBOND 3 CYS L 212 CYS H 229 1555 1555 2.05 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.02 SSBOND 5 CYS H 153 CYS H 209 1555 1555 2.02 CISPEP 1 TYR L 138 PRO L 139 0 4.84 CISPEP 2 PHE H 159 PRO H 160 0 -15.56 CISPEP 3 GLU H 161 PRO H 162 0 2.24 CRYST1 66.600 74.700 105.000 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009524 0.00000